EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000012513 (Gene tree)
Gene ID: 108261333
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 34323 bases
Position: chr2:17917443-17951765
Accession: 108261333
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018417	MMR_HSR1	PF01926.23	1.9e-08	1	1
ENSIPUP00000018433	MMR_HSR1	PF01926.23	1.9e-08	1	1
ENSIPUP00000018446	MMR_HSR1	PF01926.23	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019217	-	3134	-	ENSIPUP00000018433	471 (aa)	-	-
ENSIPUT00000019200	-	3170	XM_017462244	ENSIPUP00000018417	483 (aa)	XP_017317733	-
ENSIPUT00000019230	-	1404	-	ENSIPUP00000018446	467 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000012513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000012513	srl	93	69.954	ENSIPUG00000011609	SRL	95	69.954
ENSIPUG00000012513	srl	85	32.412	ENSIPUG00000004603	Ehd3	74	32.039
ENSIPUG00000012513	srl	86	30.693	ENSIPUG00000017390	EHD1	73	30.693
ENSIPUG00000012513	srl	77	33.889	ENSIPUG00000000204	Ehd2	65	33.889
ENSIPUG00000012513	srl	88	31.220	ENSIPUG00000024057	ehd2a	71	31.220
ENSIPUG00000012513	srl	87	31.204	ENSIPUG00000002819	ehd1a	73	31.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012513	srl	100	79.070	ENSG00000185739	SRL	99	82.558	Homo_sapiens
ENSIPUG00000012513	srl	96	75.893	ENSAPOG00000012432	SRL	99	75.893	Acanthochromis_polyacanthus
ENSIPUG00000012513	srl	100	91.507	ENSAPOG00000018093	srl	99	92.971	Acanthochromis_polyacanthus
ENSIPUG00000012513	srl	99	79.614	ENSAMEG00000010862	SRL	52	79.614	Ailuropoda_melanoleuca
ENSIPUG00000012513	srl	96	92.018	ENSACIG00000015799	srl	100	92.018	Amphilophus_citrinellus
ENSIPUG00000012513	srl	96	74.777	ENSACIG00000015419	SRL	99	74.777	Amphilophus_citrinellus
ENSIPUG00000012513	srl	93	93.318	ENSAOCG00000007574	srl	100	93.318	Amphiprion_ocellaris
ENSIPUG00000012513	srl	96	75.947	ENSAOCG00000017049	SRL	100	74.783	Amphiprion_ocellaris
ENSIPUG00000012513	srl	96	72.321	ENSAPEG00000006533	SRL	100	71.957	Amphiprion_percula
ENSIPUG00000012513	srl	100	91.925	ENSAPEG00000006911	srl	100	91.925	Amphiprion_percula
ENSIPUG00000012513	srl	95	75.877	ENSATEG00000009643	SRL	52	76.096	Anabas_testudineus
ENSIPUG00000012513	srl	100	91.511	ENSATEG00000024315	srl	100	91.511	Anabas_testudineus
ENSIPUG00000012513	srl	94	83.444	ENSACAG00000016380	SRL	89	80.573	Anolis_carolinensis
ENSIPUG00000012513	srl	100	91.097	ENSACLG00000027685	srl	100	91.097	Astatotilapia_calliptera
ENSIPUG00000012513	srl	96	73.002	ENSACLG00000024674	SRL	58	73.002	Astatotilapia_calliptera
ENSIPUG00000012513	srl	100	93.996	ENSAMXG00000018789	srl	92	93.996	Astyanax_mexicanus
ENSIPUG00000012513	srl	90	77.566	ENSAMXG00000038693	SRL	100	73.731	Astyanax_mexicanus
ENSIPUG00000012513	srl	95	82.207	ENSBTAG00000001078	SRL	56	82.207	Bos_taurus
ENSIPUG00000012513	srl	95	82.127	ENSCJAG00000019750	SRL	100	79.070	Callithrix_jacchus
ENSIPUG00000012513	srl	99	79.310	ENSCAFG00000019233	SRL	86	78.925	Canis_familiaris
ENSIPUG00000012513	srl	95	81.348	ENSCAFG00020025024	SRL	55	81.348	Canis_lupus_dingo
ENSIPUG00000012513	srl	98	80.828	ENSCHIG00000017927	SRL	57	81.099	Capra_hircus
ENSIPUG00000012513	srl	100	79.915	ENSTSYG00000007919	SRL	99	83.488	Carlito_syrichta
ENSIPUG00000012513	srl	96	80.574	ENSCPOG00000012643	SRL	100	79.025	Cavia_porcellus
ENSIPUG00000012513	srl	95	77.828	ENSCCAG00000032646	SRL	100	84.960	Cebus_capucinus
ENSIPUG00000012513	srl	100	79.281	ENSCATG00000032227	-	100	79.281	Cercocebus_atys
ENSIPUG00000012513	srl	96	80.574	ENSCLAG00000016242	SRL	100	79.025	Chinchilla_lanigera
ENSIPUG00000012513	srl	82	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSIPUG00000012513	srl	96	86.269	ENSCPBG00000026371	SRL	99	80.544	Chrysemys_picta_bellii
ENSIPUG00000012513	srl	94	58.333	ENSCING00000005231	-	98	58.333	Ciona_intestinalis
ENSIPUG00000012513	srl	100	79.281	ENSCANG00000035872	SRL	99	82.558	Colobus_angolensis_palliatus
ENSIPUG00000012513	srl	97	80.744	ENSCGRG00001016630	Srl	100	79.661	Cricetulus_griseus_chok1gshd
ENSIPUG00000012513	srl	97	80.744	ENSCGRG00000005458	Srl	100	79.661	Cricetulus_griseus_crigri
ENSIPUG00000012513	srl	99	72.163	ENSCSEG00000011866	SRL	94	72.377	Cynoglossus_semilaevis
ENSIPUG00000012513	srl	100	90.890	ENSCSEG00000016151	srl	100	90.890	Cynoglossus_semilaevis
ENSIPUG00000012513	srl	97	74.946	ENSCVAG00000022465	SRL	61	75.217	Cyprinodon_variegatus
ENSIPUG00000012513	srl	100	90.890	ENSCVAG00000003513	srl	100	90.890	Cyprinodon_variegatus
ENSIPUG00000012513	srl	100	93.168	ENSDARG00000104587	srl	100	93.168	Danio_rerio
ENSIPUG00000012513	srl	81	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSIPUG00000012513	srl	95	82.022	ENSDNOG00000011643	SRL	55	80.921	Dasypus_novemcinctus
ENSIPUG00000012513	srl	97	80.921	ENSDORG00000014807	Srl	100	79.873	Dipodomys_ordii
ENSIPUG00000012513	srl	79	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSIPUG00000012513	srl	95	82.432	ENSEASG00005000942	SRL	53	82.432	Equus_asinus_asinus
ENSIPUG00000012513	srl	99	80.508	ENSECAG00000024219	SRL	99	80.508	Equus_caballus
ENSIPUG00000012513	srl	100	86.037	ENSELUG00000015616	srl	100	86.037	Esox_lucius
ENSIPUG00000012513	srl	100	78.858	ENSFCAG00000022075	SRL	100	79.704	Felis_catus
ENSIPUG00000012513	srl	96	80.804	ENSFALG00000004328	SRL	64	80.804	Ficedula_albicollis
ENSIPUG00000012513	srl	97	80.921	ENSFDAG00000006199	SRL	100	80.085	Fukomys_damarensis
ENSIPUG00000012513	srl	100	89.441	ENSFHEG00000011239	srl	100	89.441	Fundulus_heteroclitus
ENSIPUG00000012513	srl	100	71.959	ENSFHEG00000011854	SRL	99	74.777	Fundulus_heteroclitus
ENSIPUG00000012513	srl	94	88.987	ENSGMOG00000014954	srl	100	88.987	Gadus_morhua
ENSIPUG00000012513	srl	99	79.618	ENSGALG00000038884	SRL	99	79.618	Gallus_gallus
ENSIPUG00000012513	srl	100	90.476	ENSGAFG00000000010	srl	100	90.476	Gambusia_affinis
ENSIPUG00000012513	srl	96	76.169	ENSGAFG00000016984	SRL	100	76.169	Gambusia_affinis
ENSIPUG00000012513	srl	94	92.088	ENSGACG00000011332	srl	100	92.088	Gasterosteus_aculeatus
ENSIPUG00000012513	srl	100	79.070	ENSGGOG00000011312	-	100	79.070	Gorilla_gorilla
ENSIPUG00000012513	srl	98	72.766	ENSHBUG00000015710	SRL	58	72.805	Haplochromis_burtoni
ENSIPUG00000012513	srl	100	91.097	ENSHBUG00000007581	srl	100	91.097	Haplochromis_burtoni
ENSIPUG00000012513	srl	96	81.678	ENSHGLG00000015271	SRL	100	80.085	Heterocephalus_glaber_female
ENSIPUG00000012513	srl	96	81.678	ENSHGLG00100019378	SRL	100	80.085	Heterocephalus_glaber_male
ENSIPUG00000012513	srl	95	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSIPUG00000012513	srl	99	90.000	ENSHCOG00000008687	srl	99	91.071	Hippocampus_comes
ENSIPUG00000012513	srl	97	80.306	ENSSTOG00000021151	-	100	79.237	Ictidomys_tridecemlineatus
ENSIPUG00000012513	srl	100	79.873	ENSJJAG00000016400	Srl	100	79.873	Jaculus_jaculus
ENSIPUG00000012513	srl	98	89.641	ENSKMAG00000014115	srl	93	92.399	Kryptolebias_marmoratus
ENSIPUG00000012513	srl	94	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSIPUG00000012513	srl	100	90.658	ENSLBEG00000026643	srl	100	90.658	Labrus_bergylta
ENSIPUG00000012513	srl	94	76.697	ENSLBEG00000013811	SRL	99	74.728	Labrus_bergylta
ENSIPUG00000012513	srl	100	81.781	ENSLACG00000002825	SRL	99	83.296	Latimeria_chalumnae
ENSIPUG00000012513	srl	99	86.994	ENSLOCG00000002644	srl	99	86.994	Lepisosteus_oculatus
ENSIPUG00000012513	srl	98	80.174	ENSLAFG00000006329	SRL	52	80.174	Loxodonta_africana
ENSIPUG00000012513	srl	92	82.558	ENSMFAG00000037383	SRL	99	82.558	Macaca_fascicularis
ENSIPUG00000012513	srl	97	80.349	ENSMNEG00000019236	-	97	80.349	Macaca_nemestrina
ENSIPUG00000012513	srl	100	73.573	ENSMLEG00000032156	SRL	100	73.573	Mandrillus_leucophaeus
ENSIPUG00000012513	srl	94	75.551	ENSMAMG00000013756	SRL	53	75.991	Mastacembelus_armatus
ENSIPUG00000012513	srl	99	89.979	ENSMAMG00000023322	srl	99	89.979	Mastacembelus_armatus
ENSIPUG00000012513	srl	100	91.097	ENSMZEG00005004548	srl	100	91.097	Maylandia_zebra
ENSIPUG00000012513	srl	98	72.553	ENSMZEG00005004010	SRL	59	72.591	Maylandia_zebra
ENSIPUG00000012513	srl	98	79.869	ENSMGAG00000009342	SRL	95	84.043	Meleagris_gallopavo
ENSIPUG00000012513	srl	97	81.596	ENSMICG00000032307	SRL	100	79.493	Microcebus_murinus
ENSIPUG00000012513	srl	100	79.237	ENSMOCG00000008208	Srl	100	79.237	Microtus_ochrogaster
ENSIPUG00000012513	srl	94	74.725	ENSMMOG00000021572	SRL	99	74.725	Mola_mola
ENSIPUG00000012513	srl	96	90.667	ENSMMOG00000013970	srl	100	90.667	Mola_mola
ENSIPUG00000012513	srl	96	81.696	ENSMODG00000016380	-	51	81.556	Monodelphis_domestica
ENSIPUG00000012513	srl	90	77.088	ENSMALG00000000670	SRL	98	77.088	Monopterus_albus
ENSIPUG00000012513	srl	97	90.487	ENSMALG00000005039	srl	98	91.648	Monopterus_albus
ENSIPUG00000012513	srl	97	81.596	MGP_CAROLIEiJ_G0020400	Srl	100	80.297	Mus_caroli
ENSIPUG00000012513	srl	97	81.596	ENSMUSG00000022519	Srl	100	80.297	Mus_musculus
ENSIPUG00000012513	srl	97	81.596	MGP_SPRETEiJ_G0021294	Srl	100	80.297	Mus_spretus
ENSIPUG00000012513	srl	95	81.348	ENSMPUG00000015025	SRL	54	81.348	Mustela_putorius_furo
ENSIPUG00000012513	srl	97	81.004	ENSMLUG00000030733	SRL	58	81.004	Myotis_lucifugus
ENSIPUG00000012513	srl	96	81.457	ENSNGAG00000019741	Srl	100	80.085	Nannospalax_galili
ENSIPUG00000012513	srl	100	90.870	ENSNBRG00000023775	srl	100	90.870	Neolamprologus_brichardi
ENSIPUG00000012513	srl	98	72.766	ENSNBRG00000002422	SRL	56	75.231	Neolamprologus_brichardi
ENSIPUG00000012513	srl	95	77.079	ENSNLEG00000029051	SRL	100	74.419	Nomascus_leucogenys
ENSIPUG00000012513	srl	98	74.783	ENSOPRG00000000477	-	54	74.783	Ochotona_princeps
ENSIPUG00000012513	srl	95	81.798	ENSODEG00000013256	SRL	100	79.237	Octodon_degus
ENSIPUG00000012513	srl	100	90.890	ENSONIG00000005192	srl	100	90.890	Oreochromis_niloticus
ENSIPUG00000012513	srl	99	78.495	ENSOCUG00000025140	SRL	50	80.263	Oryctolagus_cuniculus
ENSIPUG00000012513	srl	100	90.269	ENSORLG00000008291	srl	97	90.269	Oryzias_latipes
ENSIPUG00000012513	srl	95	75.901	ENSORLG00000015064	SRL	97	75.901	Oryzias_latipes
ENSIPUG00000012513	srl	100	90.269	ENSORLG00020019784	srl	85	90.269	Oryzias_latipes_hni
ENSIPUG00000012513	srl	95	76.126	ENSORLG00020018173	SRL	97	76.126	Oryzias_latipes_hni
ENSIPUG00000012513	srl	100	90.062	ENSORLG00015009342	srl	97	90.062	Oryzias_latipes_hsok
ENSIPUG00000012513	srl	95	76.126	ENSORLG00015019063	SRL	97	76.126	Oryzias_latipes_hsok
ENSIPUG00000012513	srl	96	73.753	ENSOMEG00000005682	SRL	53	73.970	Oryzias_melastigma
ENSIPUG00000012513	srl	100	90.269	ENSOMEG00000010006	srl	100	90.269	Oryzias_melastigma
ENSIPUG00000012513	srl	96	80.349	ENSOGAG00000029266	SRL	56	80.349	Otolemur_garnettii
ENSIPUG00000012513	srl	98	80.828	ENSOARG00000003074	SRL	58	80.828	Ovis_aries
ENSIPUG00000012513	srl	98	79.783	ENSPPAG00000024919	-	99	82.558	Pan_paniscus
ENSIPUG00000012513	srl	100	78.858	ENSPPRG00000010274	SRL	99	82.093	Panthera_pardus
ENSIPUG00000012513	srl	100	78.858	ENSPTIG00000015162	SRL	99	82.093	Panthera_tigris_altaica
ENSIPUG00000012513	srl	100	79.070	ENSPTRG00000007712	SRL	99	82.558	Pan_troglodytes
ENSIPUG00000012513	srl	98	80.260	ENSPANG00000013804	SRL	99	80.260	Papio_anubis
ENSIPUG00000012513	srl	100	80.255	ENSPKIG00000024974	SRL	94	80.255	Paramormyrops_kingsleyae
ENSIPUG00000012513	srl	100	91.134	ENSPKIG00000006405	srl	100	91.134	Paramormyrops_kingsleyae
ENSIPUG00000012513	srl	96	81.920	ENSPSIG00000008586	SRL	50	81.920	Pelodiscus_sinensis
ENSIPUG00000012513	srl	97	90.529	ENSPMGG00000021081	srl	98	90.529	Periophthalmus_magnuspinnatus
ENSIPUG00000012513	srl	95	75.847	ENSPMGG00000023505	-	100	75.847	Periophthalmus_magnuspinnatus
ENSIPUG00000012513	srl	96	80.795	ENSPEMG00000015842	Srl	100	79.237	Peromyscus_maniculatus_bairdii
ENSIPUG00000012513	srl	90	67.512	ENSPMAG00000004786	srl	99	68.046	Petromyzon_marinus
ENSIPUG00000012513	srl	96	81.250	ENSPCIG00000012128	SRL	98	81.250	Phascolarctos_cinereus
ENSIPUG00000012513	srl	100	90.269	ENSPFOG00000011408	srl	98	89.144	Poecilia_formosa
ENSIPUG00000012513	srl	99	89.783	ENSPLAG00000008017	srl	99	90.217	Poecilia_latipinna
ENSIPUG00000012513	srl	96	74.165	ENSPLAG00000002932	SRL	100	74.165	Poecilia_latipinna
ENSIPUG00000012513	srl	100	90.021	ENSPMEG00000006745	srl	99	90.217	Poecilia_mexicana
ENSIPUG00000012513	srl	98	72.128	ENSPMEG00000005890	SRL	61	72.903	Poecilia_mexicana
ENSIPUG00000012513	srl	96	75.278	ENSPREG00000000315	SRL	100	75.278	Poecilia_reticulata
ENSIPUG00000012513	srl	100	90.476	ENSPREG00000007751	srl	99	91.778	Poecilia_reticulata
ENSIPUG00000012513	srl	90	84.248	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSIPUG00000012513	srl	96	81.099	ENSPCAG00000003378	-	50	82.766	Procavia_capensis
ENSIPUG00000012513	srl	100	79.493	ENSPCOG00000023135	SRL	99	83.023	Propithecus_coquereli
ENSIPUG00000012513	srl	95	82.022	ENSPVAG00000006586	SRL	55	82.022	Pteropus_vampyrus
ENSIPUG00000012513	srl	100	90.890	ENSPNYG00000001200	srl	100	90.890	Pundamilia_nyererei
ENSIPUG00000012513	srl	98	72.553	ENSPNYG00000003423	SRL	58	72.591	Pundamilia_nyererei
ENSIPUG00000012513	srl	100	93.996	ENSPNAG00000023106	srl	100	93.996	Pygocentrus_nattereri
ENSIPUG00000012513	srl	94	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSIPUG00000012513	srl	97	80.525	ENSRNOG00000005269	Srl	51	80.525	Rattus_norvegicus
ENSIPUG00000012513	srl	97	80.131	ENSRBIG00000042358	SRL	52	78.970	Rhinopithecus_bieti
ENSIPUG00000012513	srl	95	82.127	ENSSBOG00000029273	SRL	100	79.070	Saimiri_boliviensis_boliviensis
ENSIPUG00000012513	srl	97	80.702	ENSSHAG00000011715	-	51	80.702	Sarcophilus_harrisii
ENSIPUG00000012513	srl	95	78.378	ENSSFOG00015021327	SRL	52	76.242	Scleropages_formosus
ENSIPUG00000012513	srl	100	90.289	ENSSFOG00015009773	srl	100	90.289	Scleropages_formosus
ENSIPUG00000012513	srl	100	90.476	ENSSMAG00000016274	srl	100	90.476	Scophthalmus_maximus
ENSIPUG00000012513	srl	94	75.385	ENSSMAG00000002232	SRL	50	75.385	Scophthalmus_maximus
ENSIPUG00000012513	srl	95	76.889	ENSSDUG00000009161	SRL	99	76.889	Seriola_dumerili
ENSIPUG00000012513	srl	95	92.342	ENSSDUG00000010808	srl	98	92.342	Seriola_dumerili
ENSIPUG00000012513	srl	95	76.535	ENSSLDG00000014601	SRL	100	76.754	Seriola_lalandi_dorsalis
ENSIPUG00000012513	srl	97	91.372	ENSSLDG00000022024	srl	100	90.476	Seriola_lalandi_dorsalis
ENSIPUG00000012513	srl	96	82.340	ENSSPUG00000016859	SRL	99	82.340	Sphenodon_punctatus
ENSIPUG00000012513	srl	100	91.529	ENSSPAG00000019105	srl	100	91.529	Stegastes_partitus
ENSIPUG00000012513	srl	94	78.231	ENSSPAG00000014254	SRL	98	78.231	Stegastes_partitus
ENSIPUG00000012513	srl	95	82.432	ENSSSCG00000007949	SRL	99	82.432	Sus_scrofa
ENSIPUG00000012513	srl	96	81.027	ENSTGUG00000003951	-	99	80.889	Taeniopygia_guttata
ENSIPUG00000012513	srl	78	85.912	ENSTGUG00000016121	-	100	85.912	Taeniopygia_guttata
ENSIPUG00000012513	srl	90	78.759	ENSTRUG00000013310	SRL	55	78.759	Takifugu_rubripes
ENSIPUG00000012513	srl	100	90.269	ENSTRUG00000006005	srl	100	90.269	Takifugu_rubripes
ENSIPUG00000012513	srl	97	90.708	ENSTNIG00000009739	srl	100	89.384	Tetraodon_nigroviridis
ENSIPUG00000012513	srl	98	79.140	ENSUAMG00000005701	SRL	58	79.140	Ursus_americanus
ENSIPUG00000012513	srl	98	79.355	ENSUMAG00000002574	SRL	57	79.355	Ursus_maritimus
ENSIPUG00000012513	srl	99	78.419	ENSXETG00000017313	srl	99	81.069	Xenopus_tropicalis
ENSIPUG00000012513	srl	96	76.000	ENSXCOG00000014584	SRL	99	76.000	Xiphophorus_couchianus
ENSIPUG00000012513	srl	90	91.924	ENSXCOG00000010424	srl	97	91.924	Xiphophorus_couchianus
ENSIPUG00000012513	srl	100	90.269	ENSXMAG00000004625	srl	95	90.269	Xiphophorus_maculatus
ENSIPUG00000012513	srl	97	73.019	ENSXMAG00000027598	SRL	64	73.233	Xiphophorus_maculatus