EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000012580 (Gene tree)
Gene ID: 100528603
Gene Symbol: smn1
Alias: -
Full Name: survival motor neuron 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4864 bases
Position: chr22:8788398-8793261
Accession: 100528603
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018569	TUDOR	PF00567.24	3.6e-05	1	1
ENSIPUP00000018553	TUDOR	PF00567.24	3.7e-05	1	1
ENSIPUP00000018553	SMN	PF06003.12	4.4e-117	1	1
ENSIPUP00000018569	SMN	PF06003.12	3.5e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019341	-	1082	XM_017451180	ENSIPUP00000018553	315 (aa)	XP_017306669	A0A2D0PKZ0
ENSIPUT00000019358	-	930	-	ENSIPUP00000018569	309 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000012580's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012580	smn1	85	48.754	ENSG00000205571	SMN2	89	65.854	Homo_sapiens
ENSIPUG00000012580	smn1	85	48.754	ENSG00000172062	SMN1	91	51.119	Homo_sapiens
ENSIPUG00000012580	smn1	89	65.854	ENSAPOG00000011324	smn1	100	65.854	Acanthochromis_polyacanthus
ENSIPUG00000012580	smn1	86	50.909	ENSAMEG00000003316	-	91	51.429	Ailuropoda_melanoleuca
ENSIPUG00000012580	smn1	54	60.234	ENSACIG00000007598	smn1	93	61.176	Amphilophus_citrinellus
ENSIPUG00000012580	smn1	83	61.509	ENSACIG00000019772	-	99	60.902	Amphilophus_citrinellus
ENSIPUG00000012580	smn1	89	65.505	ENSAOCG00000024444	smn1	100	65.505	Amphiprion_ocellaris
ENSIPUG00000012580	smn1	89	65.854	ENSAPEG00000016504	smn1	100	65.854	Amphiprion_percula
ENSIPUG00000012580	smn1	84	63.736	ENSATEG00000002182	smn1	82	64.103	Anabas_testudineus
ENSIPUG00000012580	smn1	63	51.244	ENSAPLG00000010912	-	98	47.573	Anas_platyrhynchos
ENSIPUG00000012580	smn1	87	51.254	ENSACAG00000010017	-	96	53.497	Anolis_carolinensis
ENSIPUG00000012580	smn1	85	49.466	ENSANAG00000032133	-	91	50.000	Aotus_nancymaae
ENSIPUG00000012580	smn1	86	59.075	ENSACLG00000007308	smn1	98	60.339	Astatotilapia_calliptera
ENSIPUG00000012580	smn1	97	71.053	ENSAMXG00000013884	smn1	100	77.778	Astyanax_mexicanus
ENSIPUG00000012580	smn1	86	50.890	ENSBTAG00000005743	SMN2	95	50.182	Bos_taurus
ENSIPUG00000012580	smn1	83	50.181	ENSCJAG00000016290	-	91	52.416	Callithrix_jacchus
ENSIPUG00000012580	smn1	86	52.158	ENSCAFG00000007812	SMN	94	51.429	Canis_familiaris
ENSIPUG00000012580	smn1	86	52.482	ENSCAFG00020019229	-	88	51.246	Canis_lupus_dingo
ENSIPUG00000012580	smn1	86	51.079	ENSCHIG00000015559	-	93	49.097	Capra_hircus
ENSIPUG00000012580	smn1	85	50.735	ENSTSYG00000012058	-	78	76.000	Carlito_syrichta
ENSIPUG00000012580	smn1	66	44.762	ENSCAPG00000011021	-	85	42.424	Cavia_aperea
ENSIPUG00000012580	smn1	86	48.110	ENSCPOG00000012328	-	94	47.368	Cavia_porcellus
ENSIPUG00000012580	smn1	86	48.951	ENSCPOG00000036973	-	93	47.351	Cavia_porcellus
ENSIPUG00000012580	smn1	83	49.248	ENSCCAG00000018127	-	91	51.685	Cebus_capucinus
ENSIPUG00000012580	smn1	85	49.291	ENSCATG00000037002	-	91	51.493	Cercocebus_atys
ENSIPUG00000012580	smn1	86	45.936	ENSCLAG00000000284	-	94	47.959	Chinchilla_lanigera
ENSIPUG00000012580	smn1	85	51.460	ENSCSAG00000015688	-	91	52.239	Chlorocebus_sabaeus
ENSIPUG00000012580	smn1	56	80.000	ENSCHOG00000007346	-	80	85.185	Choloepus_hoffmanni
ENSIPUG00000012580	smn1	86	49.650	ENSCPBG00000010968	-	98	50.746	Chrysemys_picta_bellii
ENSIPUG00000012580	smn1	83	52.256	ENSCANG00000038242	-	93	52.471	Colobus_angolensis_palliatus
ENSIPUG00000012580	smn1	85	45.956	ENSCANG00000033324	-	89	47.464	Colobus_angolensis_palliatus
ENSIPUG00000012580	smn1	86	37.857	ENSCGRG00001016998	-	91	37.956	Cricetulus_griseus_chok1gshd
ENSIPUG00000012580	smn1	86	50.357	ENSCGRG00001017959	-	92	52.030	Cricetulus_griseus_chok1gshd
ENSIPUG00000012580	smn1	86	50.357	ENSCGRG00000007698	Smn1	92	52.030	Cricetulus_griseus_crigri
ENSIPUG00000012580	smn1	86	54.417	ENSCSEG00000015227	smn1	99	55.789	Cynoglossus_semilaevis
ENSIPUG00000012580	smn1	89	61.724	ENSCVAG00000007498	smn1	100	59.582	Cyprinodon_variegatus
ENSIPUG00000012580	smn1	89	70.819	ENSDARG00000018494	smn1	100	72.598	Danio_rerio
ENSIPUG00000012580	smn1	74	46.781	ENSDNOG00000007283	-	83	47.549	Dasypus_novemcinctus
ENSIPUG00000012580	smn1	86	42.910	ENSDORG00000007082	Smn1	93	44.000	Dipodomys_ordii
ENSIPUG00000012580	smn1	92	37.580	ENSEBUG00000011902	smn1	96	43.706	Eptatretus_burgeri
ENSIPUG00000012580	smn1	79	48.627	ENSEASG00005018000	-	89	48.627	Equus_asinus_asinus
ENSIPUG00000012580	smn1	86	51.079	ENSECAG00000015215	-	95	51.079	Equus_caballus
ENSIPUG00000012580	smn1	78	49.412	ENSEEUG00000015777	-	100	47.893	Erinaceus_europaeus
ENSIPUG00000012580	smn1	87	65.942	ENSELUG00000018067	smn1	98	65.942	Esox_lucius
ENSIPUG00000012580	smn1	86	51.812	ENSFCAG00000028292	SMN	94	51.812	Felis_catus
ENSIPUG00000012580	smn1	84	52.158	ENSFALG00000012320	-	95	53.846	Ficedula_albicollis
ENSIPUG00000012580	smn1	86	45.051	ENSFDAG00000017683	-	94	48.789	Fukomys_damarensis
ENSIPUG00000012580	smn1	86	59.498	ENSFHEG00000018508	smn1	100	62.724	Fundulus_heteroclitus
ENSIPUG00000012580	smn1	89	56.690	ENSGMOG00000017279	smn1	98	58.865	Gadus_morhua
ENSIPUG00000012580	smn1	86	53.237	ENSGALG00000002430	SMN	98	52.330	Gallus_gallus
ENSIPUG00000012580	smn1	86	66.667	ENSGAFG00000009501	smn1	100	65.972	Gambusia_affinis
ENSIPUG00000012580	smn1	90	63.793	ENSGACG00000010584	smn1	99	62.759	Gasterosteus_aculeatus
ENSIPUG00000012580	smn1	86	52.650	ENSGAGG00000011374	-	96	52.632	Gopherus_agassizii
ENSIPUG00000012580	smn1	87	31.737	ENSGAGG00000013639	-	96	37.255	Gopherus_agassizii
ENSIPUG00000012580	smn1	50	56.329	ENSGGOG00000026704	-	85	52.747	Gorilla_gorilla
ENSIPUG00000012580	smn1	50	56.329	ENSGGOG00000003872	-	93	46.360	Gorilla_gorilla
ENSIPUG00000012580	smn1	89	62.544	ENSHBUG00000013987	smn1	100	65.957	Haplochromis_burtoni
ENSIPUG00000012580	smn1	86	49.822	ENSHGLG00000001018	-	94	48.421	Heterocephalus_glaber_female
ENSIPUG00000012580	smn1	86	50.350	ENSHGLG00000001905	-	95	49.825	Heterocephalus_glaber_female
ENSIPUG00000012580	smn1	82	50.916	ENSHGLG00100018676	-	96	50.368	Heterocephalus_glaber_male
ENSIPUG00000012580	smn1	86	49.822	ENSHGLG00100011252	-	94	48.421	Heterocephalus_glaber_male
ENSIPUG00000012580	smn1	83	63.910	ENSHCOG00000017136	smn1	89	65.038	Hippocampus_comes
ENSIPUG00000012580	smn1	81	50.584	ENSSTOG00000012288	-	93	51.145	Ictidomys_tridecemlineatus
ENSIPUG00000012580	smn1	89	63.860	ENSKMAG00000007239	smn1	100	59.259	Kryptolebias_marmoratus
ENSIPUG00000012580	smn1	89	64.460	ENSLBEG00000022550	smn1	100	62.021	Labrus_bergylta
ENSIPUG00000012580	smn1	88	35.880	ENSLACG00000009808	-	95	37.415	Latimeria_chalumnae
ENSIPUG00000012580	smn1	94	32.459	ENSLOCG00000000801	-	97	31.410	Lepisosteus_oculatus
ENSIPUG00000012580	smn1	89	60.284	ENSLOCG00000011339	smn1	100	60.284	Lepisosteus_oculatus
ENSIPUG00000012580	smn1	86	52.482	ENSLAFG00000003425	-	91	52.297	Loxodonta_africana
ENSIPUG00000012580	smn1	85	46.809	ENSMFAG00000008812	-	91	48.507	Macaca_fascicularis
ENSIPUG00000012580	smn1	83	50.725	ENSMFAG00000031523	SMN1	95	50.575	Macaca_fascicularis
ENSIPUG00000012580	smn1	85	46.454	ENSMMUG00000030594	-	91	48.134	Macaca_mulatta
ENSIPUG00000012580	smn1	83	50.725	ENSMMUG00000020214	SMN1	91	51.866	Macaca_mulatta
ENSIPUG00000012580	smn1	73	38.235	ENSMNEG00000036423	-	70	43.182	Macaca_nemestrina
ENSIPUG00000012580	smn1	85	50.000	ENSMNEG00000035094	-	93	51.095	Macaca_nemestrina
ENSIPUG00000012580	smn1	83	50.725	ENSMLEG00000041902	-	91	52.239	Mandrillus_leucophaeus
ENSIPUG00000012580	smn1	89	63.066	ENSMAMG00000011034	smn1	100	63.415	Mastacembelus_armatus
ENSIPUG00000012580	smn1	89	62.898	ENSMZEG00005013634	smn1	100	66.431	Maylandia_zebra
ENSIPUG00000012580	smn1	64	49.261	ENSMGAG00000008889	-	98	46.569	Meleagris_gallopavo
ENSIPUG00000012580	smn1	55	51.149	ENSMAUG00000010262	Smn1	92	51.292	Mesocricetus_auratus
ENSIPUG00000012580	smn1	50	56.962	ENSMICG00000034708	-	82	53.297	Microcebus_murinus
ENSIPUG00000012580	smn1	86	51.838	ENSMOCG00000017833	Smn1	92	52.075	Microtus_ochrogaster
ENSIPUG00000012580	smn1	87	54.710	ENSMMOG00000005504	smn1	97	56.643	Mola_mola
ENSIPUG00000012580	smn1	83	50.725	ENSMODG00000001436	-	91	52.239	Monodelphis_domestica
ENSIPUG00000012580	smn1	89	64.014	ENSMALG00000008025	smn1	100	62.718	Monopterus_albus
ENSIPUG00000012580	smn1	86	50.000	MGP_CAROLIEiJ_G0018836	Smn1	94	51.986	Mus_caroli
ENSIPUG00000012580	smn1	83	50.183	ENSMUSG00000021645	Smn1	92	52.222	Mus_musculus
ENSIPUG00000012580	smn1	83	51.095	MGP_PahariEiJ_G0015911	Smn1	92	51.301	Mus_pahari
ENSIPUG00000012580	smn1	86	49.643	MGP_SPRETEiJ_G0019718	Smn1	94	51.625	Mus_spretus
ENSIPUG00000012580	smn1	82	49.259	ENSMPUG00000014470	-	93	50.746	Mustela_putorius_furo
ENSIPUG00000012580	smn1	86	50.000	ENSMLUG00000010603	-	90	50.177	Myotis_lucifugus
ENSIPUG00000012580	smn1	89	50.512	ENSNGAG00000019833	Smn1	98	50.000	Nannospalax_galili
ENSIPUG00000012580	smn1	89	62.238	ENSNBRG00000023000	smn1	100	65.734	Neolamprologus_brichardi
ENSIPUG00000012580	smn1	85	48.754	ENSNLEG00000004454	-	91	51.119	Nomascus_leucogenys
ENSIPUG00000012580	smn1	61	46.875	ENSMEUG00000011393	-	85	46.114	Notamacropus_eugenii
ENSIPUG00000012580	smn1	78	49.035	ENSOPRG00000002015	-	100	48.092	Ochotona_princeps
ENSIPUG00000012580	smn1	81	51.527	ENSODEG00000015976	-	91	49.466	Octodon_degus
ENSIPUG00000012580	smn1	89	62.587	ENSONIG00000011799	smn1	100	66.434	Oreochromis_niloticus
ENSIPUG00000012580	smn1	84	52.708	ENSOANG00000001626	-	95	52.364	Ornithorhynchus_anatinus
ENSIPUG00000012580	smn1	86	52.381	ENSOCUG00000017097	-	93	50.347	Oryctolagus_cuniculus
ENSIPUG00000012580	smn1	86	50.538	ENSOCUG00000026649	-	94	48.649	Oryctolagus_cuniculus
ENSIPUG00000012580	smn1	86	41.429	ENSOCUG00000025183	-	94	43.796	Oryctolagus_cuniculus
ENSIPUG00000012580	smn1	89	62.199	ENSORLG00000010552	smn1	100	63.763	Oryzias_latipes
ENSIPUG00000012580	smn1	89	59.286	ENSORLG00020007936	smn1	100	59.233	Oryzias_latipes_hni
ENSIPUG00000012580	smn1	89	64.685	ENSORLG00015022425	smn1	100	63.415	Oryzias_latipes_hsok
ENSIPUG00000012580	smn1	89	60.351	ENSOMEG00000007824	smn1	100	64.336	Oryzias_melastigma
ENSIPUG00000012580	smn1	81	47.547	ENSOGAG00000031414	-	92	45.833	Otolemur_garnettii
ENSIPUG00000012580	smn1	86	47.079	ENSOARG00000005425	-	99	48.000	Ovis_aries
ENSIPUG00000012580	smn1	85	48.754	ENSPPAG00000036640	-	91	51.119	Pan_paniscus
ENSIPUG00000012580	smn1	86	51.812	ENSPPRG00000005575	-	94	51.812	Panthera_pardus
ENSIPUG00000012580	smn1	86	51.625	ENSPTIG00000007745	-	95	51.264	Panthera_tigris_altaica
ENSIPUG00000012580	smn1	85	48.592	ENSPTRG00000016955	-	91	50.923	Pan_troglodytes
ENSIPUG00000012580	smn1	85	47.331	ENSPANG00000000253	-	94	47.703	Papio_anubis
ENSIPUG00000012580	smn1	85	51.264	ENSPANG00000013601	-	91	51.866	Papio_anubis
ENSIPUG00000012580	smn1	88	60.072	ENSPKIG00000011096	smn1	99	60.650	Paramormyrops_kingsleyae
ENSIPUG00000012580	smn1	83	48.239	ENSPSIG00000014787	-	85	49.640	Pelodiscus_sinensis
ENSIPUG00000012580	smn1	88	57.244	ENSPMGG00000012285	smn1	97	57.914	Periophthalmus_magnuspinnatus
ENSIPUG00000012580	smn1	83	41.993	ENSPMAG00000005004	smn1	93	40.647	Petromyzon_marinus
ENSIPUG00000012580	smn1	83	51.087	ENSPCIG00000025764	-	93	51.661	Phascolarctos_cinereus
ENSIPUG00000012580	smn1	86	65.950	ENSPFOG00000007786	smn1	100	65.278	Poecilia_formosa
ENSIPUG00000012580	smn1	86	66.308	ENSPLAG00000012071	smn1	100	65.625	Poecilia_latipinna
ENSIPUG00000012580	smn1	86	65.950	ENSPMEG00000017085	smn1	100	65.278	Poecilia_mexicana
ENSIPUG00000012580	smn1	86	66.667	ENSPREG00000005824	smn1	100	65.625	Poecilia_reticulata
ENSIPUG00000012580	smn1	54	76.923	ENSPPYG00000019189	-	80	76.923	Pongo_abelii
ENSIPUG00000012580	smn1	81	48.134	ENSPPYG00000015533	-	95	49.808	Pongo_abelii
ENSIPUG00000012580	smn1	83	51.246	ENSPCAG00000004187	-	99	50.355	Procavia_capensis
ENSIPUG00000012580	smn1	53	51.445	ENSPCOG00000022307	-	87	49.479	Propithecus_coquereli
ENSIPUG00000012580	smn1	86	50.909	ENSPVAG00000005977	-	93	51.429	Pteropus_vampyrus
ENSIPUG00000012580	smn1	89	62.238	ENSPNYG00000014148	smn1	100	65.734	Pundamilia_nyererei
ENSIPUG00000012580	smn1	97	75.241	ENSPNAG00000014007	smn1	97	75.241	Pygocentrus_nattereri
ENSIPUG00000012580	smn1	83	49.817	ENSRNOG00000018067	Smn1	92	51.698	Rattus_norvegicus
ENSIPUG00000012580	smn1	81	48.450	ENSRBIG00000036775	-	88	47.490	Rhinopithecus_bieti
ENSIPUG00000012580	smn1	83	51.087	ENSRBIG00000037052	-	91	52.239	Rhinopithecus_bieti
ENSIPUG00000012580	smn1	85	48.699	ENSRROG00000031088	-	93	47.212	Rhinopithecus_roxellana
ENSIPUG00000012580	smn1	83	51.087	ENSRROG00000039399	-	91	52.239	Rhinopithecus_roxellana
ENSIPUG00000012580	smn1	52	50.296	ENSSBOG00000020112	-	87	46.400	Saimiri_boliviensis_boliviensis
ENSIPUG00000012580	smn1	83	50.362	ENSSBOG00000011665	-	91	51.504	Saimiri_boliviensis_boliviensis
ENSIPUG00000012580	smn1	83	52.239	ENSSHAG00000001499	-	97	49.077	Sarcophilus_harrisii
ENSIPUG00000012580	smn1	87	63.768	ENSSFOG00015015507	smn1	98	63.768	Scleropages_formosus
ENSIPUG00000012580	smn1	89	60.490	ENSSMAG00000007922	smn1	100	61.888	Scophthalmus_maximus
ENSIPUG00000012580	smn1	89	66.899	ENSSDUG00000018533	smn1	100	66.899	Seriola_dumerili
ENSIPUG00000012580	smn1	89	67.247	ENSSLDG00000021135	smn1	100	67.247	Seriola_lalandi_dorsalis
ENSIPUG00000012580	smn1	88	54.577	ENSSPUG00000000373	-	99	53.448	Sphenodon_punctatus
ENSIPUG00000012580	smn1	89	64.111	ENSSPAG00000004345	smn1	100	64.111	Stegastes_partitus
ENSIPUG00000012580	smn1	86	50.725	ENSSSCG00000016970	-	94	51.087	Sus_scrofa
ENSIPUG00000012580	smn1	86	41.758	ENSSSCG00000029127	-	91	41.392	Sus_scrofa
ENSIPUG00000012580	smn1	81	51.493	ENSTGUG00000001548	-	95	49.071	Taeniopygia_guttata
ENSIPUG00000012580	smn1	86	57.762	ENSTRUG00000000736	smn	100	58.596	Takifugu_rubripes
ENSIPUG00000012580	smn1	86	59.140	ENSTNIG00000009892	smn1	100	57.491	Tetraodon_nigroviridis
ENSIPUG00000012580	smn1	86	50.909	ENSUMAG00000007842	-	77	48.860	Ursus_maritimus
ENSIPUG00000012580	smn1	55	81.481	ENSVPAG00000009887	-	62	81.481	Vicugna_pacos
ENSIPUG00000012580	smn1	86	52.158	ENSVVUG00000006934	-	94	51.429	Vulpes_vulpes
ENSIPUG00000012580	smn1	86	56.318	ENSXETG00000018189	smn2	94	55.052	Xenopus_tropicalis
ENSIPUG00000012580	smn1	77	32.075	ENSXETG00000004912	-	87	33.585	Xenopus_tropicalis
ENSIPUG00000012580	smn1	89	65.625	ENSXMAG00000001521	smn1	100	65.972	Xiphophorus_maculatus