EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000012602 (Gene tree)
Gene ID
108265404
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein B-like
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Minus strand
Length
15858 bases
Position
chr5:6485543-6501400
Accession
108265404
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000018660PABPPF00658.181.4e-2711
ENSIPUP00000018577PABPPF00658.181.6e-2711
ENSIPUP00000018613PABPPF00658.181.6e-2711
ENSIPUP00000018660RRM_5PF13893.62.6e-0811
ENSIPUP00000018613RRM_5PF13893.63.7e-0811
ENSIPUP00000018577RRM_5PF13893.68.3e-0811
ENSIPUP00000018577RRM_1PF00076.221.7e-8814
ENSIPUP00000018577RRM_1PF00076.221.7e-8824
ENSIPUP00000018577RRM_1PF00076.221.7e-8834
ENSIPUP00000018577RRM_1PF00076.221.7e-8844
ENSIPUP00000018660RRM_1PF00076.221.9e-8814
ENSIPUP00000018660RRM_1PF00076.221.9e-8824
ENSIPUP00000018660RRM_1PF00076.221.9e-8834
ENSIPUP00000018660RRM_1PF00076.221.9e-8844
ENSIPUP00000018613RRM_1PF00076.222.9e-8814
ENSIPUP00000018613RRM_1PF00076.222.9e-8824
ENSIPUP00000018613RRM_1PF00076.222.9e-8834
ENSIPUP00000018613RRM_1PF00076.222.9e-8844
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000019403-2528XM_017467679ENSIPUP00000018613624 (aa)XP_017323168A0A2D0QXN3
ENSIPUT00000019365-2609XM_017467675ENSIPUP00000018577651 (aa)XP_017323164A0A2D0QXX9
ENSIPUT00000019454-1737-ENSIPUP00000018660578 (aa)--
Gene Model
Click here to download ENSIPUG00000012602's gene model file
Pathways
Pathway IDPathway NameSource
ipu03013RNA transportKEGG
ipu03015mRNA surveillance pathwayKEGG
ipu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012602's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000012602pabpc1l5852.667ENSIPUG00000020086-8552.667
ENSIPUG00000012602pabpc1l6235.616ENSIPUG00000008218celf3a9336.111
ENSIPUG00000012602pabpc1l7545.486ENSIPUG00000019895-6345.486
ENSIPUG00000012602pabpc1l6330.178ENSIPUG00000014082elavl1a9030.178
ENSIPUG00000012602pabpc1l6363.218ENSIPUG00000006760-8863.218
ENSIPUG00000012602pabpc1l6130.058ENSIPUG00000024556ncl7730.636
ENSIPUG00000012602pabpc1l6830.625ENSIPUG00000012337elavl28130.625
ENSIPUG00000012602pabpc1l6363.793ENSIPUG00000006780-8563.793
ENSIPUG00000012602pabpc1l7447.635ENSIPUG00000024284-9347.297
ENSIPUG00000012602pabpc1l6133.939ENSIPUG00000001991-7533.939
ENSIPUG00000012602pabpc1l5234.884ENSIPUG00000000913celf55534.247
ENSIPUG00000012602pabpc1l6734.940ENSIPUG00000001381elavl48134.940
ENSIPUG00000012602pabpc1l9969.427ENSIPUG00000016620pabpc49869.401
ENSIPUG00000012602pabpc1l10074.662ENSIPUG00000010791-9874.662
ENSIPUG00000012602pabpc1l8957.353ENSIPUG00000018724-8957.353
ENSIPUG00000012602pabpc1l5141.304ENSIPUG00000007890-7641.304
ENSIPUG00000012602pabpc1l9972.152ENSIPUG00000008848pabpc1a9872.152
ENSIPUG00000012602pabpc1l7057.073ENSIPUG00000021244-7749.183
ENSIPUG00000012602pabpc1l6534.737ENSIPUG00000001757rbms2a5034.737
ENSIPUG00000012602pabpc1l5234.884ENSIPUG00000017915celf5b6034.247
ENSIPUG00000012602pabpc1l5565.289ENSIPUG00000024435-8565.289
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000012602pabpc1l9971.040ENSG00000101104PABPC1L9879.321Homo_sapiens
ENSIPUG00000012602pabpc1l9974.400ENSAPOG00000010842pabpc1l9974.400Acanthochromis_polyacanthus
ENSIPUG00000012602pabpc1l9680.387ENSAMEG00000004099PABPC1L10067.025Ailuropoda_melanoleuca
ENSIPUG00000012602pabpc1l10079.107ENSACIG00000021004-10080.094Amphilophus_citrinellus
ENSIPUG00000012602pabpc1l10076.471ENSAOCG00000006167-10076.471Amphiprion_ocellaris
ENSIPUG00000012602pabpc1l10076.115ENSAPEG00000010558-9788.263Amphiprion_percula
ENSIPUG00000012602pabpc1l10078.130ENSATEG00000007428pabpc1l10078.447Anabas_testudineus
ENSIPUG00000012602pabpc1l9875.241ENSAPLG00000008415PABPC1L9975.159Anas_platyrhynchos
ENSIPUG00000012602pabpc1l9977.603ENSACAG00000011841PABPC1L9977.603Anolis_carolinensis
ENSIPUG00000012602pabpc1l9970.240ENSANAG00000026826PABPC1L9970.240Aotus_nancymaae
ENSIPUG00000012602pabpc1l10079.173ENSACLG00000024791pabpc1l10079.173Astatotilapia_calliptera
ENSIPUG00000012602pabpc1l10092.000ENSAMXG00000013552pabpc1l10092.000Astyanax_mexicanus
ENSIPUG00000012602pabpc1l5986.905ENSBTAG00000055300-10086.905Bos_taurus
ENSIPUG00000012602pabpc1l7067.148ENSBTAG00000016849PABPC1L8567.266Bos_taurus
ENSIPUG00000012602pabpc1l6379.885ENSCJAG00000038506-10079.885Callithrix_jacchus
ENSIPUG00000012602pabpc1l9970.400ENSCJAG00000017628PABPC1L9970.400Callithrix_jacchus
ENSIPUG00000012602pabpc1l9966.410ENSCAFG00000009573PABPC1L10066.410Canis_familiaris
ENSIPUG00000012602pabpc1l9971.656ENSCAFG00020013828PABPC1L9971.656Canis_lupus_dingo
ENSIPUG00000012602pabpc1l9870.473ENSCHIG00000025759PABPC1L9170.473Capra_hircus
ENSIPUG00000012602pabpc1l9970.128ENSTSYG00000006645PABPC1L9970.128Carlito_syrichta
ENSIPUG00000012602pabpc1l9864.982ENSCAPG00000014519PABPC1L9964.982Cavia_aperea
ENSIPUG00000012602pabpc1l9966.984ENSCPOG00000013633PABPC1L9966.984Cavia_porcellus
ENSIPUG00000012602pabpc1l9970.560ENSCCAG00000023338PABPC1L9970.560Cebus_capucinus
ENSIPUG00000012602pabpc1l9971.200ENSCATG00000034065PABPC1L9971.200Cercocebus_atys
ENSIPUG00000012602pabpc1l9967.038ENSCLAG00000005298PABPC1L9967.675Chinchilla_lanigera
ENSIPUG00000012602pabpc1l9970.880ENSCSAG00000014242PABPC1L9970.880Chlorocebus_sabaeus
ENSIPUG00000012602pabpc1l7684.163ENSCPBG00000017755-9984.163Chrysemys_picta_bellii
ENSIPUG00000012602pabpc1l5589.076ENSCPBG00000007810-8389.076Chrysemys_picta_bellii
ENSIPUG00000012602pabpc1l9665.217ENSCING00000002796-9851.751Ciona_intestinalis
ENSIPUG00000012602pabpc1l10061.785ENSCSAVG00000004246-9072.185Ciona_savignyi
ENSIPUG00000012602pabpc1l9960.613ENSCSAVG00000003102-10083.221Ciona_savignyi
ENSIPUG00000012602pabpc1l9967.350ENSCANG00000037530PABPC1L9967.350Colobus_angolensis_palliatus
ENSIPUG00000012602pabpc1l9962.908ENSCGRG00001021938Pabpc1l9962.908Cricetulus_griseus_chok1gshd
ENSIPUG00000012602pabpc1l9962.908ENSCGRG00000007946Pabpc1l9962.908Cricetulus_griseus_crigri
ENSIPUG00000012602pabpc1l9976.389ENSCSEG00000021295pabpc1l9976.389Cynoglossus_semilaevis
ENSIPUG00000012602pabpc1l10078.254ENSCVAG00000015943-9995.420Cyprinodon_variegatus
ENSIPUG00000012602pabpc1l9985.280ENSDARG00000002597pabpc1l10085.280Danio_rerio
ENSIPUG00000012602pabpc1l9972.364ENSDNOG00000048450PABPC1L9972.364Dasypus_novemcinctus
ENSIPUG00000012602pabpc1l9968.051ENSDORG00000001067Pabpc1l9968.051Dipodomys_ordii
ENSIPUG00000012602pabpc1l9578.862ENSETEG00000009969PABPC1L7278.862Echinops_telfairi
ENSIPUG00000012602pabpc1l5379.503ENSEASG00005023407-6579.503Equus_asinus_asinus
ENSIPUG00000012602pabpc1l5984.524ENSEASG00005023408-10084.524Equus_asinus_asinus
ENSIPUG00000012602pabpc1l7073.333ENSECAG00000040139-8371.429Equus_caballus
ENSIPUG00000012602pabpc1l9968.051ENSEEUG00000005978PABPC1L9968.051Erinaceus_europaeus
ENSIPUG00000012602pabpc1l10082.753ENSELUG00000001811pabpc1l10083.168Esox_lucius
ENSIPUG00000012602pabpc1l9972.596ENSFCAG00000011692PABPC1L9972.596Felis_catus
ENSIPUG00000012602pabpc1l8676.147ENSFALG00000005372PABPC1L9375.360Ficedula_albicollis
ENSIPUG00000012602pabpc1l9968.421ENSFDAG00000008291PABPC1L9968.421Fukomys_damarensis
ENSIPUG00000012602pabpc1l10080.096ENSFHEG00000003398pabpc1l10080.096Fundulus_heteroclitus
ENSIPUG00000012602pabpc1l9977.440ENSGMOG00000004437pabpc1l9977.440Gadus_morhua
ENSIPUG00000012602pabpc1l9676.036ENSGALG00000004123PABPC1L9885.472Gallus_gallus
ENSIPUG00000012602pabpc1l10076.551ENSGAFG00000021057pabpc1l10076.551Gambusia_affinis
ENSIPUG00000012602pabpc1l9976.874ENSGACG00000002792pabpc1l10076.874Gasterosteus_aculeatus
ENSIPUG00000012602pabpc1l9978.060ENSGAGG00000000589PABPC1L9285.556Gopherus_agassizii
ENSIPUG00000012602pabpc1l9971.200ENSGGOG00000004584PABPC1L9971.406Gorilla_gorilla
ENSIPUG00000012602pabpc1l10079.014ENSHBUG00000006134pabpc1l10079.014Haplochromis_burtoni
ENSIPUG00000012602pabpc1l9967.195ENSHGLG00000008434PABPC1L9967.512Heterocephalus_glaber_female
ENSIPUG00000012602pabpc1l9967.195ENSHGLG00100012151PABPC1L9967.512Heterocephalus_glaber_male
ENSIPUG00000012602pabpc1l6385.955ENSHGLG00100019506-10085.955Heterocephalus_glaber_male
ENSIPUG00000012602pabpc1l10075.433ENSHCOG00000009270pabpc1l10076.285Hippocampus_comes
ENSIPUG00000012602pabpc1l9970.000ENSSTOG00000003739PABPC1L9970.000Ictidomys_tridecemlineatus
ENSIPUG00000012602pabpc1l9955.240ENSJJAG00000022406Pabpc1l9953.228Jaculus_jaculus
ENSIPUG00000012602pabpc1l10077.389ENSKMAG00000016847pabpc1l10077.389Kryptolebias_marmoratus
ENSIPUG00000012602pabpc1l10077.583ENSLBEG00000010084pabpc1l10077.583Labrus_bergylta
ENSIPUG00000012602pabpc1l9975.000ENSLACG00000005762PABPC1L9878.212Latimeria_chalumnae
ENSIPUG00000012602pabpc1l9985.397ENSLOCG00000007519pabpc1l9985.397Lepisosteus_oculatus
ENSIPUG00000012602pabpc1l9970.794ENSLAFG00000003553PABPC1L10070.794Loxodonta_africana
ENSIPUG00000012602pabpc1l9971.520ENSMFAG00000040365PABPC1L9971.520Macaca_fascicularis
ENSIPUG00000012602pabpc1l9970.240ENSMNEG00000032298PABPC1L9970.240Macaca_nemestrina
ENSIPUG00000012602pabpc1l9971.200ENSMLEG00000043139PABPC1L9971.200Mandrillus_leucophaeus
ENSIPUG00000012602pabpc1l9778.525ENSMAMG00000011854pabpc1l9778.525Mastacembelus_armatus
ENSIPUG00000012602pabpc1l10079.173ENSMZEG00005023713pabpc1l10079.173Maylandia_zebra
ENSIPUG00000012602pabpc1l9976.789ENSMGAG00000003674PABPC1L9976.789Meleagris_gallopavo
ENSIPUG00000012602pabpc1l9961.316ENSMOCG00000013186Pabpc1l9961.316Microtus_ochrogaster
ENSIPUG00000012602pabpc1l9977.831ENSMMOG00000020574-9095.385Mola_mola
ENSIPUG00000012602pabpc1l9474.124ENSMODG00000016198PABPC1L9974.351Monodelphis_domestica
ENSIPUG00000012602pabpc1l9975.152ENSMALG00000021622pabpc1l10077.011Monopterus_albus
ENSIPUG00000012602pabpc1l9961.635MGP_CAROLIEiJ_G0024627Pabpc1l9961.635Mus_caroli
ENSIPUG00000012602pabpc1l9961.755ENSMUSG00000054582Pabpc1l9962.215Mus_musculus
ENSIPUG00000012602pabpc1l10062.145MGP_PahariEiJ_G0026071Pabpc1l10062.145Mus_pahari
ENSIPUG00000012602pabpc1l9961.635MGP_SPRETEiJ_G0025549Pabpc1l9961.635Mus_spretus
ENSIPUG00000012602pabpc1l9972.364ENSMPUG00000017646PABPC1L9972.364Mustela_putorius_furo
ENSIPUG00000012602pabpc1l9868.740ENSMLUG00000006324PABPC1L9868.740Myotis_lucifugus
ENSIPUG00000012602pabpc1l9963.492ENSNGAG00000010458Pabpc1l9963.492Nannospalax_galili
ENSIPUG00000012602pabpc1l9982.494ENSNBRG00000016633pabpc1l10082.494Neolamprologus_brichardi
ENSIPUG00000012602pabpc1l9069.027ENSMEUG00000007905-8969.231Notamacropus_eugenii
ENSIPUG00000012602pabpc1l9969.600ENSOPRG00000011846PABPC1L9969.600Ochotona_princeps
ENSIPUG00000012602pabpc1l6280.000ENSODEG00000002920-9780.000Octodon_degus
ENSIPUG00000012602pabpc1l9967.073ENSODEG00000015482PABPC1L9967.073Octodon_degus
ENSIPUG00000012602pabpc1l10079.491ENSONIG00000017314pabpc1l10079.491Oreochromis_niloticus
ENSIPUG00000012602pabpc1l9063.333ENSOANG00000015793-10063.333Ornithorhynchus_anatinus
ENSIPUG00000012602pabpc1l9974.099ENSOCUG00000003005PABPC1L9966.769Oryctolagus_cuniculus
ENSIPUG00000012602pabpc1l10076.630ENSORLG00000010322pabpc1l10082.353Oryzias_latipes
ENSIPUG00000012602pabpc1l10076.471ENSORLG00020021193pabpc1l10082.353Oryzias_latipes_hni
ENSIPUG00000012602pabpc1l10076.471ENSORLG00015017018pabpc1l10081.176Oryzias_latipes_hsok
ENSIPUG00000012602pabpc1l10074.810ENSOMEG00000010789pabpc1l10074.810Oryzias_melastigma
ENSIPUG00000012602pabpc1l9971.270ENSOGAG00000032999PABPC1L9971.270Otolemur_garnettii
ENSIPUG00000012602pabpc1l9970.740ENSOARG00000004578PABPC1L9970.740Ovis_aries
ENSIPUG00000012602pabpc1l9971.040ENSPPAG00000039677PABPC1L9971.040Pan_paniscus
ENSIPUG00000012602pabpc1l6769.136ENSPPRG00000019327-9869.136Panthera_pardus
ENSIPUG00000012602pabpc1l9872.609ENSPTIG00000006524PABPC1L9972.609Panthera_tigris_altaica
ENSIPUG00000012602pabpc1l6779.321ENSPTRG00000013531PABPC1L9879.321Pan_troglodytes
ENSIPUG00000012602pabpc1l9971.200ENSPANG00000018788PABPC1L9971.200Papio_anubis
ENSIPUG00000012602pabpc1l10082.884ENSPKIG00000007322pabpc1l10082.884Paramormyrops_kingsleyae
ENSIPUG00000012602pabpc1l5782.443ENSPKIG00000016810-9382.443Paramormyrops_kingsleyae
ENSIPUG00000012602pabpc1l7186.199ENSPSIG00000013289PABPC1L9886.199Pelodiscus_sinensis
ENSIPUG00000012602pabpc1l6589.767ENSPMGG00000023117pabpc1l9789.767Periophthalmus_magnuspinnatus
ENSIPUG00000012602pabpc1l6172.081ENSPMGG00000023121-9172.081Periophthalmus_magnuspinnatus
ENSIPUG00000012602pabpc1l9961.111ENSPEMG00000020671Pabpc1l9961.965Peromyscus_maniculatus_bairdii
ENSIPUG00000012602pabpc1l10079.809ENSPFOG00000013241pabpc1l10079.809Poecilia_formosa
ENSIPUG00000012602pabpc1l10080.207ENSPLAG00000017490-10080.207Poecilia_latipinna
ENSIPUG00000012602pabpc1l5696.154ENSPLAG00000023686-9296.154Poecilia_latipinna
ENSIPUG00000012602pabpc1l5696.154ENSPMEG00000009185-8896.154Poecilia_mexicana
ENSIPUG00000012602pabpc1l10079.459ENSPMEG00000007677pabpc1l10079.459Poecilia_mexicana
ENSIPUG00000012602pabpc1l7185.956ENSPREG00000015886pabpc1l9985.956Poecilia_reticulata
ENSIPUG00000012602pabpc1l9971.200ENSPPYG00000011042PABPC1L9971.406Pongo_abelii
ENSIPUG00000012602pabpc1l6584.375ENSPCAG00000011787-7584.375Procavia_capensis
ENSIPUG00000012602pabpc1l9970.720ENSPCOG00000020630PABPC1L9970.720Propithecus_coquereli
ENSIPUG00000012602pabpc1l9970.240ENSPVAG00000012663PABPC1L9970.240Pteropus_vampyrus
ENSIPUG00000012602pabpc1l9982.734ENSPNYG00000004101pabpc1l10082.734Pundamilia_nyererei
ENSIPUG00000012602pabpc1l10084.160ENSPNAG00000021248pabpc1l10084.160Pygocentrus_nattereri
ENSIPUG00000012602pabpc1l9962.025ENSRNOG00000012750Pabpc1l9962.025Rattus_norvegicus
ENSIPUG00000012602pabpc1l9971.040ENSRBIG00000035381PABPC1L9971.040Rhinopithecus_bieti
ENSIPUG00000012602pabpc1l9970.880ENSRROG00000044498PABPC1L9970.880Rhinopithecus_roxellana
ENSIPUG00000012602pabpc1l9970.240ENSSBOG00000009532-9970.240Saimiri_boliviensis_boliviensis
ENSIPUG00000012602pabpc1l9870.161ENSSHAG00000011446PABPC1L10070.161Sarcophilus_harrisii
ENSIPUG00000012602pabpc1l10084.738ENSSFOG00015017304pabpc1l10084.738Scleropages_formosus
ENSIPUG00000012602pabpc1l9979.058ENSSMAG00000010516pabpc1l9892.647Scophthalmus_maximus
ENSIPUG00000012602pabpc1l10078.469ENSSDUG00000014743pabpc1l10078.469Seriola_dumerili
ENSIPUG00000012602pabpc1l9881.579ENSSLDG00000006981pabpc1l9886.607Seriola_lalandi_dorsalis
ENSIPUG00000012602pabpc1l9976.266ENSSPUG00000004233PABPC1L9976.266Sphenodon_punctatus
ENSIPUG00000012602pabpc1l10074.742ENSSPAG00000017137pabpc1l10074.742Stegastes_partitus
ENSIPUG00000012602pabpc1l9970.223ENSSSCG00000007382PABPC1L9970.223Sus_scrofa
ENSIPUG00000012602pabpc1l9974.766ENSTGUG00000005114PABPC1L10074.766Taeniopygia_guttata
ENSIPUG00000012602pabpc1l9777.504ENSTRUG00000011085pabpc1l9777.504Takifugu_rubripes
ENSIPUG00000012602pabpc1l9974.920ENSTNIG00000017903pabpc1l9874.920Tetraodon_nigroviridis
ENSIPUG00000012602pabpc1l9480.479ENSTBEG00000002851PABPC1L7980.479Tupaia_belangeri
ENSIPUG00000012602pabpc1l9468.803ENSTTRG00000007618PABPC1L10069.130Tursiops_truncatus
ENSIPUG00000012602pabpc1l9970.805ENSUAMG00000017682PABPC1L9970.805Ursus_americanus
ENSIPUG00000012602pabpc1l7574.474ENSUMAG00000025436PABPC1L9574.474Ursus_maritimus
ENSIPUG00000012602pabpc1l9878.656ENSVVUG00000018939PABPC1L9878.656Vulpes_vulpes
ENSIPUG00000012602pabpc1l9972.178ENSXETG00000022831pabpc1l9972.178Xenopus_tropicalis
ENSIPUG00000012602pabpc1l9882.857ENSXCOG00000005459pabpc1l9991.489Xiphophorus_couchianus
ENSIPUG00000012602pabpc1l10079.862ENSXMAG00000017135pabpc1l10079.862Xiphophorus_maculatus

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