EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000012823 (Gene tree)
Gene ID: 108269245
Gene Symbol: DDX6
Alias: fk48d07|p54b|si:ch211-175g6.7|wu:fk48d07
Full Name: probable ATP-dependent RNA helicase DDX6
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 10204 bases
Position: chr1:18644359-18654562
Accession: 108269245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000018965	DEAD	PF00270.29	1.8e-40	1	1
ENSIPUP00000018992	DEAD	PF00270.29	2.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000019773	-	2163	XM_017475000	ENSIPUP00000018965	478 (aa)	XP_017330489	W5ULV7
ENSIPUT00000019801	-	1633	-	ENSIPUP00000018992	516 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000012823's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000012823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000012823	DDX6	71	39.706	ENSIPUG00000003494	ddx1	54	39.706
ENSIPUG00000012823	DDX6	77	38.441	ENSIPUG00000009463	EIF4A2	90	38.441
ENSIPUG00000012823	DDX6	78	35.789	ENSIPUG00000015733	DDX39B	82	35.789
ENSIPUG00000012823	DDX6	75	30.729	ENSIPUG00000006602	ddx56	73	30.729
ENSIPUG00000012823	DDX6	74	31.868	ENSIPUG00000014448	ddx5	64	31.186
ENSIPUG00000012823	DDX6	81	30.622	ENSIPUG00000009936	ddx3xb	62	30.404
ENSIPUG00000012823	DDX6	98	84.632	ENSIPUG00000008367	-	98	84.894
ENSIPUG00000012823	DDX6	78	32.808	ENSIPUG00000023788	ddx47	80	32.808
ENSIPUG00000012823	DDX6	79	37.831	ENSIPUG00000021785	eif4a3	92	37.831
ENSIPUG00000012823	DDX6	70	33.333	ENSIPUG00000023423	ddx43	50	33.333
ENSIPUG00000012823	DDX6	71	32.194	ENSIPUG00000015768	si:dkey-156n14.5	74	30.872
ENSIPUG00000012823	DDX6	73	31.285	ENSIPUG00000005386	ddx49	75	31.285
ENSIPUG00000012823	DDX6	75	31.282	ENSIPUG00000023024	ddx3xa	57	31.017
ENSIPUG00000012823	DDX6	72	35.754	ENSIPUG00000022795	zgc:193690	73	35.754
ENSIPUG00000012823	DDX6	75	30.400	ENSIPUG00000008100	Ddx59	60	30.400
ENSIPUG00000012823	DDX6	77	38.710	ENSIPUG00000012038	eif4a2	92	38.710
ENSIPUG00000012823	DDX6	98	80.597	ENSIPUG00000000616	ddx6	98	81.034
ENSIPUG00000012823	DDX6	77	30.435	ENSIPUG00000005247	DDX23	51	30.456
ENSIPUG00000012823	DDX6	78	35.526	ENSIPUG00000021552	ddx39aa	89	35.526
ENSIPUG00000012823	DDX6	71	31.006	ENSIPUG00000001845	ddx4	59	31.006
ENSIPUG00000012823	DDX6	74	35.967	ENSIPUG00000023912	ddx19	80	35.967
ENSIPUG00000012823	DDX6	75	31.978	ENSIPUG00000007815	ddx5	56	32.386
ENSIPUG00000012823	DDX6	67	31.325	ENSIPUG00000012876	ddx18	56	31.325
ENSIPUG00000012823	DDX6	78	36.053	ENSIPUG00000021341	DDX39A	89	36.053
ENSIPUG00000012823	DDX6	81	33.920	ENSIPUG00000004876	ddx20	50	33.920
ENSIPUG00000012823	DDX6	77	38.441	ENSIPUG00000005117	if4a1	91	38.441
ENSIPUG00000012823	DDX6	68	30.435	ENSIPUG00000014551	ddx55	57	30.435

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000012823	DDX6	76	90.463	ENSAPOG00000023627	-	90	92.373	Acanthochromis_polyacanthus
ENSIPUG00000012823	DDX6	99	82.536	ENSAPOG00000014829	ddx61	96	83.864	Acanthochromis_polyacanthus
ENSIPUG00000012823	DDX6	99	78.170	ENSACIG00000018355	-	96	79.274	Amphilophus_citrinellus
ENSIPUG00000012823	DDX6	99	83.333	ENSAOCG00000007627	ddx61	96	84.681	Amphiprion_ocellaris
ENSIPUG00000012823	DDX6	99	84.823	ENSAOCG00000006269	-	96	86.111	Amphiprion_ocellaris
ENSIPUG00000012823	DDX6	99	84.823	ENSAPEG00000020642	-	96	86.111	Amphiprion_percula
ENSIPUG00000012823	DDX6	99	83.333	ENSAPEG00000007293	ddx61	96	84.681	Amphiprion_percula
ENSIPUG00000012823	DDX6	99	84.823	ENSAPEG00000021368	-	96	86.111	Amphiprion_percula
ENSIPUG00000012823	DDX6	99	85.031	ENSATEG00000005424	-	96	86.325	Anabas_testudineus
ENSIPUG00000012823	DDX6	99	82.809	ENSATEG00000011302	ddx61	99	82.563	Anabas_testudineus
ENSIPUG00000012823	DDX6	99	83.438	ENSACLG00000027620	ddx61	98	83.830	Astatotilapia_calliptera
ENSIPUG00000012823	DDX6	99	85.031	ENSACLG00000003260	-	96	86.325	Astatotilapia_calliptera
ENSIPUG00000012823	DDX6	97	89.126	ENSAMXG00000032542	ddx61	97	89.126	Astyanax_mexicanus
ENSIPUG00000012823	DDX6	100	82.245	ENSAMXG00000033980	-	95	84.255	Astyanax_mexicanus
ENSIPUG00000012823	DDX6	99	84.679	ENSCSEG00000009893	-	96	86.325	Cynoglossus_semilaevis
ENSIPUG00000012823	DDX6	99	83.824	ENSCVAG00000011006	-	96	85.097	Cyprinodon_variegatus
ENSIPUG00000012823	DDX6	98	87.342	ENSDARG00000018425	ddx61	97	87.633	Danio_rerio
ENSIPUG00000012823	DDX6	99	85.417	ENSELUG00000020545	ddx61	96	86.469	Esox_lucius
ENSIPUG00000012823	DDX6	99	83.851	ENSELUG00000022538	-	96	84.842	Esox_lucius
ENSIPUG00000012823	DDX6	99	84.454	ENSFHEG00000015487	-	96	85.745	Fundulus_heteroclitus
ENSIPUG00000012823	DDX6	97	84.746	ENSGMOG00000013762	ddx61	98	84.746	Gadus_morhua
ENSIPUG00000012823	DDX6	66	78.313	ENSGMOG00000003561	-	100	78.313	Gadus_morhua
ENSIPUG00000012823	DDX6	99	83.613	ENSGAFG00000015865	-	95	85.529	Gambusia_affinis
ENSIPUG00000012823	DDX6	99	82.988	ENSGACG00000002413	-	97	84.435	Gasterosteus_aculeatus
ENSIPUG00000012823	DDX6	99	81.930	ENSGACG00000003401	ddx61	98	82.881	Gasterosteus_aculeatus
ENSIPUG00000012823	DDX6	99	85.031	ENSHBUG00000017033	-	96	86.325	Haplochromis_burtoni
ENSIPUG00000012823	DDX6	99	83.648	ENSHBUG00000017832	ddx61	98	84.043	Haplochromis_burtoni
ENSIPUG00000012823	DDX6	98	81.529	ENSHCOG00000008184	ddx61	97	82.227	Hippocampus_comes
ENSIPUG00000012823	DDX6	99	83.891	ENSHCOG00000012238	-	96	85.075	Hippocampus_comes
ENSIPUG00000012823	DDX6	99	84.760	ENSKMAG00000007213	-	96	85.897	Kryptolebias_marmoratus
ENSIPUG00000012823	DDX6	99	82.463	ENSLBEG00000001740	ddx61	97	83.617	Labrus_bergylta
ENSIPUG00000012823	DDX6	99	82.992	ENSLBEG00000016890	-	96	84.421	Labrus_bergylta
ENSIPUG00000012823	DDX6	98	81.705	ENSLACG00000015214	ddx61	98	82.241	Latimeria_chalumnae
ENSIPUG00000012823	DDX6	96	47.436	ENSLOCG00000004352	ddx61	94	48.077	Lepisosteus_oculatus
ENSIPUG00000012823	DDX6	99	82.752	ENSMAMG00000005321	ddx61	96	84.894	Mastacembelus_armatus
ENSIPUG00000012823	DDX6	99	85.892	ENSMAMG00000005559	-	96	87.207	Mastacembelus_armatus
ENSIPUG00000012823	DDX6	99	85.031	ENSMZEG00005026268	-	96	86.325	Maylandia_zebra
ENSIPUG00000012823	DDX6	99	83.648	ENSMZEG00005003556	ddx61	98	84.043	Maylandia_zebra
ENSIPUG00000012823	DDX6	97	81.646	ENSMMOG00000007415	ddx61	97	81.646	Mola_mola
ENSIPUG00000012823	DDX6	99	75.260	ENSMMOG00000013694	-	95	76.282	Mola_mola
ENSIPUG00000012823	DDX6	74	73.654	ENSMMOG00000008825	-	92	73.654	Mola_mola
ENSIPUG00000012823	DDX6	99	85.863	ENSMALG00000013817	-	96	86.994	Monopterus_albus
ENSIPUG00000012823	DDX6	98	71.875	ENSMALG00000013776	ddx61	95	72.421	Monopterus_albus
ENSIPUG00000012823	DDX6	99	77.963	ENSNBRG00000015075	-	96	79.060	Neolamprologus_brichardi
ENSIPUG00000012823	DDX6	99	76.730	ENSNBRG00000015800	ddx61	98	77.447	Neolamprologus_brichardi
ENSIPUG00000012823	DDX6	99	85.031	ENSONIG00000013748	-	96	86.325	Oreochromis_niloticus
ENSIPUG00000012823	DDX6	99	83.054	ENSONIG00000011418	ddx61	98	84.043	Oreochromis_niloticus
ENSIPUG00000012823	DDX6	97	85.470	ENSORLG00000009178	-	96	85.470	Oryzias_latipes
ENSIPUG00000012823	DDX6	97	85.470	ENSORLG00020015515	-	96	85.470	Oryzias_latipes_hni
ENSIPUG00000012823	DDX6	97	85.470	ENSORLG00015006764	-	96	85.470	Oryzias_latipes_hsok
ENSIPUG00000012823	DDX6	98	75.899	ENSOMEG00000022326	-	98	76.496	Oryzias_melastigma
ENSIPUG00000012823	DDX6	97	86.920	ENSPKIG00000024264	ddx61	97	86.920	Paramormyrops_kingsleyae
ENSIPUG00000012823	DDX6	99	77.568	ENSPMGG00000013355	-	96	78.205	Periophthalmus_magnuspinnatus
ENSIPUG00000012823	DDX6	99	84.632	ENSPFOG00000005750	-	96	85.961	Poecilia_formosa
ENSIPUG00000012823	DDX6	99	84.632	ENSPLAG00000000403	-	96	85.961	Poecilia_latipinna
ENSIPUG00000012823	DDX6	98	84.778	ENSPMEG00000023737	-	96	85.961	Poecilia_mexicana
ENSIPUG00000012823	DDX6	99	77.626	ENSPNYG00000015045	ddx61	98	77.909	Pundamilia_nyererei
ENSIPUG00000012823	DDX6	99	85.031	ENSPNYG00000003986	-	96	86.325	Pundamilia_nyererei
ENSIPUG00000012823	DDX6	99	82.922	ENSPNAG00000008742	-	96	84.355	Pygocentrus_nattereri
ENSIPUG00000012823	DDX6	99	88.750	ENSPNAG00000024072	ddx61	98	89.362	Pygocentrus_nattereri
ENSIPUG00000012823	DDX6	97	86.709	ENSSFOG00015021404	ddx61	96	86.709	Scleropages_formosus
ENSIPUG00000012823	DDX6	97	83.156	ENSSMAG00000006591	ddx61	96	82.979	Scophthalmus_maximus
ENSIPUG00000012823	DDX6	99	83.992	ENSSMAG00000001793	-	96	85.256	Scophthalmus_maximus
ENSIPUG00000012823	DDX6	97	84.829	ENSSDUG00000009713	ddx61	96	84.648	Seriola_dumerili
ENSIPUG00000012823	DDX6	99	84.855	ENSSDUG00000007530	-	96	86.141	Seriola_dumerili
ENSIPUG00000012823	DDX6	99	84.855	ENSSLDG00000007608	-	96	86.141	Seriola_lalandi_dorsalis
ENSIPUG00000012823	DDX6	97	84.648	ENSSLDG00000000132	ddx61	96	84.468	Seriola_lalandi_dorsalis
ENSIPUG00000012823	DDX6	99	84.823	ENSSPAG00000013878	-	96	86.111	Stegastes_partitus
ENSIPUG00000012823	DDX6	97	86.266	ENSSPAG00000001578	ddx61	96	86.081	Stegastes_partitus
ENSIPUG00000012823	DDX6	99	82.195	ENSTRUG00000012432	-	96	83.940	Takifugu_rubripes
ENSIPUG00000012823	DDX6	99	84.100	ENSTNIG00000003560	-	98	85.043	Tetraodon_nigroviridis
ENSIPUG00000012823	DDX6	99	75.000	ENSXCOG00000001406	-	95	76.674	Xiphophorus_couchianus
ENSIPUG00000012823	DDX6	99	84.034	ENSXMAG00000016090	-	95	85.961	Xiphophorus_maculatus