EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013142 (Gene tree)
Gene ID: 108267648
Gene Symbol: imp3
Alias: zgc:56526
Full Name: IMP3%2C U3 small nucleolar ribonucleoprotein
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 8570 bases
Position: chr7:10022245-10030814
Accession: 108267648
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019377	S4	PF01479.25	4.6e-08	1	1
ENSIPUP00000019367	S4	PF01479.25	5.5e-08	1	1
ENSIPUP00000019377	Ribosomal_S4	PF00163.19	1.5e-08	1	1
ENSIPUP00000019367	Ribosomal_S4	PF00163.19	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020198	-	609	-	ENSIPUP00000019367	202 (aa)	-	-
ENSIPUT00000020209	-	696	XM_017471933	ENSIPUP00000019377	183 (aa)	XP_017327422	A0A2D0RA30

Gene Model

Click here to download ENSIPUG00000013142's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013142	imp3	100	85.246	ENSAPOG00000014720	imp3	100	85.246	Acanthochromis_polyacanthus
ENSIPUG00000013142	imp3	99	71.978	ENSAMEG00000019247	IMP3	99	71.978	Ailuropoda_melanoleuca
ENSIPUG00000013142	imp3	98	85.475	ENSACIG00000022070	imp3	96	85.475	Amphilophus_citrinellus
ENSIPUG00000013142	imp3	100	84.699	ENSAOCG00000015761	imp3	100	84.699	Amphiprion_ocellaris
ENSIPUG00000013142	imp3	100	84.699	ENSAPEG00000005250	imp3	100	84.699	Amphiprion_percula
ENSIPUG00000013142	imp3	100	85.246	ENSATEG00000020021	imp3	100	85.246	Anabas_testudineus
ENSIPUG00000013142	imp3	100	70.588	ENSACAG00000016259	IMP3	100	70.588	Anolis_carolinensis
ENSIPUG00000013142	imp3	100	60.326	ENSANAG00000036874	-	100	60.326	Aotus_nancymaae
ENSIPUG00000013142	imp3	99	71.429	ENSANAG00000016669	-	99	71.429	Aotus_nancymaae
ENSIPUG00000013142	imp3	100	85.792	ENSACLG00000009929	imp3	100	85.792	Astatotilapia_calliptera
ENSIPUG00000013142	imp3	96	89.714	ENSAMXG00000018715	imp3	99	89.714	Astyanax_mexicanus
ENSIPUG00000013142	imp3	99	50.549	WBGene00016740	C48B6.2	99	50.549	Caenorhabditis_elegans
ENSIPUG00000013142	imp3	99	71.429	ENSCJAG00000044585	IMP3	99	71.429	Callithrix_jacchus
ENSIPUG00000013142	imp3	99	69.231	ENSCAFG00000018039	IMP3	90	60.891	Canis_familiaris
ENSIPUG00000013142	imp3	99	69.231	ENSCAFG00020003760	-	99	69.231	Canis_lupus_dingo
ENSIPUG00000013142	imp3	99	56.593	ENSCAFG00020006737	-	99	56.593	Canis_lupus_dingo
ENSIPUG00000013142	imp3	99	71.429	ENSCHIG00000006295	IMP3	99	71.429	Capra_hircus
ENSIPUG00000013142	imp3	99	70.879	ENSTSYG00000005503	IMP3	99	70.879	Carlito_syrichta
ENSIPUG00000013142	imp3	99	71.429	ENSCPOG00000012016	IMP3	99	71.429	Cavia_porcellus
ENSIPUG00000013142	imp3	99	71.429	ENSCCAG00000002712	-	99	71.429	Cebus_capucinus
ENSIPUG00000013142	imp3	98	62.222	ENSCCAG00000023378	-	99	60.920	Cebus_capucinus
ENSIPUG00000013142	imp3	99	70.879	ENSCATG00000015188	IMP3	99	70.879	Cercocebus_atys
ENSIPUG00000013142	imp3	99	70.879	ENSCSAG00000019732	IMP3	99	70.879	Chlorocebus_sabaeus
ENSIPUG00000013142	imp3	99	71.429	ENSCHOG00000012046	IMP3	99	71.429	Choloepus_hoffmanni
ENSIPUG00000013142	imp3	100	65.946	ENSCPBG00000021662	IMP3	100	65.946	Chrysemys_picta_bellii
ENSIPUG00000013142	imp3	99	68.508	ENSCING00000004233	-	100	68.508	Ciona_intestinalis
ENSIPUG00000013142	imp3	99	68.508	ENSCSAVG00000000698	-	100	68.508	Ciona_savignyi
ENSIPUG00000013142	imp3	99	70.879	ENSCANG00000018342	IMP3	99	70.879	Colobus_angolensis_palliatus
ENSIPUG00000013142	imp3	99	69.780	ENSCGRG00001001326	Imp3	99	69.780	Cricetulus_griseus_chok1gshd
ENSIPUG00000013142	imp3	99	69.780	ENSCGRG00000018907	Imp3	99	69.780	Cricetulus_griseus_crigri
ENSIPUG00000013142	imp3	99	86.264	ENSCSEG00000017200	imp3	99	86.264	Cynoglossus_semilaevis
ENSIPUG00000013142	imp3	100	78.378	ENSCVAG00000019511	imp3	100	78.378	Cyprinodon_variegatus
ENSIPUG00000013142	imp3	100	87.978	ENSDARG00000115266	imp3	100	88.166	Danio_rerio
ENSIPUG00000013142	imp3	99	71.429	ENSDNOG00000015787	IMP3	80	71.429	Dasypus_novemcinctus
ENSIPUG00000013142	imp3	99	71.429	ENSDORG00000029301	Imp3	99	71.429	Dipodomys_ordii
ENSIPUG00000013142	imp3	99	62.983	FBgn0034232	CG4866	100	62.983	Drosophila_melanogaster
ENSIPUG00000013142	imp3	99	71.429	ENSETEG00000004278	IMP3	99	71.429	Echinops_telfairi
ENSIPUG00000013142	imp3	99	74.033	ENSEBUG00000002343	imp3	99	74.033	Eptatretus_burgeri
ENSIPUG00000013142	imp3	99	70.330	ENSEASG00005015693	IMP3	99	70.330	Equus_asinus_asinus
ENSIPUG00000013142	imp3	99	70.879	ENSECAG00000015786	IMP3	99	70.879	Equus_caballus
ENSIPUG00000013142	imp3	100	86.339	ENSELUG00000023264	imp3	100	86.339	Esox_lucius
ENSIPUG00000013142	imp3	99	70.879	ENSFCAG00000040328	IMP3	99	70.879	Felis_catus
ENSIPUG00000013142	imp3	70	55.814	ENSFALG00000014811	IMP3	99	57.252	Ficedula_albicollis
ENSIPUG00000013142	imp3	99	70.879	ENSFDAG00000018422	IMP3	99	70.879	Fukomys_damarensis
ENSIPUG00000013142	imp3	100	86.885	ENSFHEG00000016954	imp3	100	86.885	Fundulus_heteroclitus
ENSIPUG00000013142	imp3	100	85.792	ENSGMOG00000018162	imp3	100	85.792	Gadus_morhua
ENSIPUG00000013142	imp3	100	55.135	ENSGALG00000040238	IMP3	100	56.757	Gallus_gallus
ENSIPUG00000013142	imp3	100	84.153	ENSGAFG00000007425	imp3	100	84.153	Gambusia_affinis
ENSIPUG00000013142	imp3	100	84.699	ENSGACG00000015998	imp3	100	84.699	Gasterosteus_aculeatus
ENSIPUG00000013142	imp3	100	66.486	ENSGAGG00000008163	IMP3	100	66.486	Gopherus_agassizii
ENSIPUG00000013142	imp3	99	70.879	ENSGGOG00000025122	IMP3	99	70.879	Gorilla_gorilla
ENSIPUG00000013142	imp3	100	85.246	ENSHBUG00000018453	imp3	100	85.246	Haplochromis_burtoni
ENSIPUG00000013142	imp3	99	70.330	ENSHGLG00000019824	IMP3	99	70.330	Heterocephalus_glaber_female
ENSIPUG00000013142	imp3	99	70.330	ENSHGLG00100020660	IMP3	99	70.330	Heterocephalus_glaber_male
ENSIPUG00000013142	imp3	99	84.530	ENSHCOG00000020565	imp3	99	84.530	Hippocampus_comes
ENSIPUG00000013142	imp3	99	71.429	ENSSTOG00000030143	IMP3	99	71.429	Ictidomys_tridecemlineatus
ENSIPUG00000013142	imp3	100	84.699	ENSKMAG00000001956	imp3	100	84.699	Kryptolebias_marmoratus
ENSIPUG00000013142	imp3	100	85.792	ENSLBEG00000008178	imp3	100	85.792	Labrus_bergylta
ENSIPUG00000013142	imp3	100	81.421	ENSLACG00000022148	imp3	100	81.421	Latimeria_chalumnae
ENSIPUG00000013142	imp3	100	83.060	ENSLOCG00000010237	imp3	100	83.060	Lepisosteus_oculatus
ENSIPUG00000013142	imp3	99	70.879	ENSLAFG00000004425	IMP3	99	70.879	Loxodonta_africana
ENSIPUG00000013142	imp3	99	70.879	ENSMFAG00000008867	IMP3	99	70.879	Macaca_fascicularis
ENSIPUG00000013142	imp3	99	70.879	ENSMMUG00000016103	IMP3	99	70.879	Macaca_mulatta
ENSIPUG00000013142	imp3	99	70.879	ENSMNEG00000026328	IMP3	99	70.879	Macaca_nemestrina
ENSIPUG00000013142	imp3	100	86.339	ENSMAMG00000003215	imp3	100	86.339	Mastacembelus_armatus
ENSIPUG00000013142	imp3	100	85.792	ENSMZEG00005005544	imp3	100	85.792	Maylandia_zebra
ENSIPUG00000013142	imp3	99	69.231	ENSMAUG00000010279	Imp3	99	69.231	Mesocricetus_auratus
ENSIPUG00000013142	imp3	99	70.330	ENSMICG00000044149	IMP3	99	70.330	Microcebus_murinus
ENSIPUG00000013142	imp3	99	69.780	ENSMOCG00000008647	Imp3	99	69.780	Microtus_ochrogaster
ENSIPUG00000013142	imp3	96	86.857	ENSMMOG00000018117	imp3	84	86.857	Mola_mola
ENSIPUG00000013142	imp3	99	69.780	ENSMODG00000025193	IMP3	99	69.780	Monodelphis_domestica
ENSIPUG00000013142	imp3	99	86.264	ENSMALG00000006505	imp3	99	86.264	Monopterus_albus
ENSIPUG00000013142	imp3	99	70.330	MGP_CAROLIEiJ_G0032258	Imp3	99	70.330	Mus_caroli
ENSIPUG00000013142	imp3	99	70.330	ENSMUSG00000032288	Imp3	99	70.330	Mus_musculus
ENSIPUG00000013142	imp3	99	70.330	MGP_PahariEiJ_G0015125	Imp3	99	70.330	Mus_pahari
ENSIPUG00000013142	imp3	99	70.330	MGP_SPRETEiJ_G0033398	Imp3	99	70.330	Mus_spretus
ENSIPUG00000013142	imp3	99	70.330	ENSMPUG00000020147	IMP3	99	70.330	Mustela_putorius_furo
ENSIPUG00000013142	imp3	99	70.879	ENSMLUG00000014032	IMP3	99	70.879	Myotis_lucifugus
ENSIPUG00000013142	imp3	99	68.132	ENSNGAG00000017248	Imp3	99	68.132	Nannospalax_galili
ENSIPUG00000013142	imp3	100	84.699	ENSNBRG00000004060	imp3	100	84.699	Neolamprologus_brichardi
ENSIPUG00000013142	imp3	99	71.978	ENSOPRG00000015906	-	99	71.978	Ochotona_princeps
ENSIPUG00000013142	imp3	99	71.429	ENSODEG00000020194	IMP3	99	71.429	Octodon_degus
ENSIPUG00000013142	imp3	100	83.607	ENSONIG00000010661	imp3	100	83.607	Oreochromis_niloticus
ENSIPUG00000013142	imp3	99	70.879	ENSOCUG00000004690	IMP3	99	70.879	Oryctolagus_cuniculus
ENSIPUG00000013142	imp3	100	82.514	ENSORLG00000004484	imp3	100	82.514	Oryzias_latipes
ENSIPUG00000013142	imp3	100	82.514	ENSORLG00020003771	imp3	100	82.514	Oryzias_latipes_hni
ENSIPUG00000013142	imp3	100	81.967	ENSORLG00015006933	imp3	100	81.967	Oryzias_latipes_hsok
ENSIPUG00000013142	imp3	100	83.607	ENSOMEG00000016160	imp3	100	83.607	Oryzias_melastigma
ENSIPUG00000013142	imp3	99	71.978	ENSOGAG00000004917	IMP3	99	71.978	Otolemur_garnettii
ENSIPUG00000013142	imp3	99	70.879	ENSPPAG00000009241	IMP3	99	70.879	Pan_paniscus
ENSIPUG00000013142	imp3	99	70.879	ENSPPRG00000018701	IMP3	99	70.879	Panthera_pardus
ENSIPUG00000013142	imp3	99	70.879	ENSPTRG00000052235	IMP3	99	70.879	Pan_troglodytes
ENSIPUG00000013142	imp3	99	70.879	ENSPANG00000013668	IMP3	99	70.879	Papio_anubis
ENSIPUG00000013142	imp3	100	90.164	ENSPKIG00000007169	imp3	100	90.164	Paramormyrops_kingsleyae
ENSIPUG00000013142	imp3	100	77.957	ENSPMGG00000009379	imp3	100	77.957	Periophthalmus_magnuspinnatus
ENSIPUG00000013142	imp3	99	69.780	ENSPEMG00000013003	Imp3	99	69.780	Peromyscus_maniculatus_bairdii
ENSIPUG00000013142	imp3	100	84.153	ENSPFOG00000016529	imp3	100	84.153	Poecilia_formosa
ENSIPUG00000013142	imp3	100	84.699	ENSPLAG00000013831	imp3	100	84.699	Poecilia_latipinna
ENSIPUG00000013142	imp3	99	84.615	ENSPMEG00000000797	imp3	99	84.615	Poecilia_mexicana
ENSIPUG00000013142	imp3	100	85.246	ENSPREG00000006885	imp3	100	85.246	Poecilia_reticulata
ENSIPUG00000013142	imp3	99	71.429	ENSPPYG00000006664	IMP3	99	71.429	Pongo_abelii
ENSIPUG00000013142	imp3	99	71.429	ENSPCAG00000006920	IMP3	99	71.429	Procavia_capensis
ENSIPUG00000013142	imp3	99	70.330	ENSPCOG00000012367	IMP3	99	70.330	Propithecus_coquereli
ENSIPUG00000013142	imp3	99	71.429	ENSPVAG00000010036	IMP3	99	71.429	Pteropus_vampyrus
ENSIPUG00000013142	imp3	100	85.792	ENSPNYG00000000324	imp3	100	85.792	Pundamilia_nyererei
ENSIPUG00000013142	imp3	100	91.257	ENSPNAG00000017113	imp3	100	91.257	Pygocentrus_nattereri
ENSIPUG00000013142	imp3	99	69.780	ENSRNOG00000017460	Imp3	99	69.780	Rattus_norvegicus
ENSIPUG00000013142	imp3	99	70.330	ENSRBIG00000024522	IMP3	99	70.330	Rhinopithecus_bieti
ENSIPUG00000013142	imp3	99	70.330	ENSRROG00000024157	IMP3	99	70.330	Rhinopithecus_roxellana
ENSIPUG00000013142	imp3	99	53.297	YHR148W	-	99	53.297	Saccharomyces_cerevisiae
ENSIPUG00000013142	imp3	100	60.326	ENSSBOG00000026404	-	100	60.326	Saimiri_boliviensis_boliviensis
ENSIPUG00000013142	imp3	99	71.429	ENSSBOG00000006542	-	99	71.429	Saimiri_boliviensis_boliviensis
ENSIPUG00000013142	imp3	99	67.582	ENSSHAG00000006200	IMP3	99	67.582	Sarcophilus_harrisii
ENSIPUG00000013142	imp3	100	87.978	ENSSFOG00015012483	imp3	100	87.978	Scleropages_formosus
ENSIPUG00000013142	imp3	100	85.246	ENSSMAG00000007865	imp3	100	85.246	Scophthalmus_maximus
ENSIPUG00000013142	imp3	100	86.339	ENSSDUG00000010594	imp3	100	86.339	Seriola_dumerili
ENSIPUG00000013142	imp3	100	86.339	ENSSLDG00000015587	imp3	100	86.339	Seriola_lalandi_dorsalis
ENSIPUG00000013142	imp3	99	71.429	ENSSARG00000009657	IMP3	99	71.429	Sorex_araneus
ENSIPUG00000013142	imp3	100	85.792	ENSSPAG00000002088	imp3	100	85.792	Stegastes_partitus
ENSIPUG00000013142	imp3	100	55.135	ENSTGUG00000013228	IMP3	100	56.757	Taeniopygia_guttata
ENSIPUG00000013142	imp3	99	85.165	ENSTRUG00000025783	imp3	99	85.165	Takifugu_rubripes
ENSIPUG00000013142	imp3	99	71.429	ENSUAMG00000022724	IMP3	99	71.429	Ursus_americanus
ENSIPUG00000013142	imp3	99	71.429	ENSUMAG00000003736	IMP3	99	71.429	Ursus_maritimus
ENSIPUG00000013142	imp3	99	69.780	ENSVVUG00000019589	IMP3	99	69.780	Vulpes_vulpes
ENSIPUG00000013142	imp3	96	84.000	ENSXCOG00000007392	imp3	96	84.000	Xiphophorus_couchianus
ENSIPUG00000013142	imp3	100	84.153	ENSXMAG00000023049	imp3	100	84.153	Xiphophorus_maculatus