EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000013153 (Gene tree)
Gene ID: 108257442
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 13587 bases
Position: chr24:1341758-1355344
Accession: 108257442
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019449	RRM_1	PF00076.22	1.5e-28	1	2
ENSIPUP00000019449	RRM_1	PF00076.22	1.5e-28	2	2
ENSIPUP00000019414	RRM_1	PF00076.22	1.6e-28	1	2
ENSIPUP00000019414	RRM_1	PF00076.22	1.6e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020291	-	2130	-	ENSIPUP00000019449	709 (aa)	-	-
ENSIPUT00000020253	-	2460	XM_017455215	ENSIPUP00000019414	726 (aa)	XP_017310704	A0A2D0Q022

Gene Model

Click here to download ENSIPUG00000013153's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013153's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000013153	raver1	60	62.791	ENSIPUG00000007082	raver2	51	55.587

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013153	raver1	99	50.384	ENSG00000161847	RAVER1	97	52.603	Homo_sapiens
ENSIPUG00000013153	raver1	98	69.081	ENSAPOG00000017267	raver1	90	68.384	Acanthochromis_polyacanthus
ENSIPUG00000013153	raver1	89	56.863	ENSAMEG00000011738	RAVER1	94	51.257	Ailuropoda_melanoleuca
ENSIPUG00000013153	raver1	98	69.735	ENSAOCG00000005128	raver1	95	69.038	Amphiprion_ocellaris
ENSIPUG00000013153	raver1	98	70.083	ENSAPEG00000010854	raver1	98	69.391	Amphiprion_percula
ENSIPUG00000013153	raver1	98	69.529	ENSATEG00000021004	raver1	98	68.837	Anabas_testudineus
ENSIPUG00000013153	raver1	80	50.479	ENSACAG00000008386	-	91	49.843	Anolis_carolinensis
ENSIPUG00000013153	raver1	83	61.111	ENSANAG00000028226	RAVER1	95	52.524	Aotus_nancymaae
ENSIPUG00000013153	raver1	100	68.571	ENSACLG00000018492	raver1	98	66.338	Astatotilapia_calliptera
ENSIPUG00000013153	raver1	98	74.309	ENSAMXG00000005132	raver1	98	74.171	Astyanax_mexicanus
ENSIPUG00000013153	raver1	83	87.755	ENSBTAG00000015721	RAVER1	97	54.196	Bos_taurus
ENSIPUG00000013153	raver1	89	57.195	ENSCJAG00000005671	RAVER1	95	53.224	Callithrix_jacchus
ENSIPUG00000013153	raver1	99	50.131	ENSCAFG00000017861	RAVER1	96	52.793	Canis_familiaris
ENSIPUG00000013153	raver1	94	51.934	ENSCAFG00020024449	RAVER1	98	53.186	Canis_lupus_dingo
ENSIPUG00000013153	raver1	76	85.714	ENSCHIG00000006718	RAVER1	97	53.508	Capra_hircus
ENSIPUG00000013153	raver1	64	68.144	ENSTSYG00000027107	RAVER1	100	53.404	Carlito_syrichta
ENSIPUG00000013153	raver1	76	87.755	ENSCAPG00000002269	RAVER1	98	50.208	Cavia_aperea
ENSIPUG00000013153	raver1	75	87.755	ENSCPOG00000001008	RAVER1	98	51.023	Cavia_porcellus
ENSIPUG00000013153	raver1	83	61.000	ENSCCAG00000031723	RAVER1	95	53.306	Cebus_capucinus
ENSIPUG00000013153	raver1	89	57.013	ENSCATG00000043863	RAVER1	95	53.022	Cercocebus_atys
ENSIPUG00000013153	raver1	81	61.866	ENSCLAG00000009336	RAVER1	98	51.078	Chinchilla_lanigera
ENSIPUG00000013153	raver1	89	57.013	ENSCSAG00000007317	RAVER1	80	53.268	Chlorocebus_sabaeus
ENSIPUG00000013153	raver1	93	52.562	ENSCPBG00000005349	-	98	52.300	Chrysemys_picta_bellii
ENSIPUG00000013153	raver1	89	57.013	ENSCANG00000008337	RAVER1	95	52.885	Colobus_angolensis_palliatus
ENSIPUG00000013153	raver1	81	60.784	ENSCGRG00001013260	-	98	52.109	Cricetulus_griseus_chok1gshd
ENSIPUG00000013153	raver1	81	60.784	ENSCGRG00000015138	-	98	52.109	Cricetulus_griseus_crigri
ENSIPUG00000013153	raver1	98	64.795	ENSCSEG00000021092	raver1	99	63.612	Cynoglossus_semilaevis
ENSIPUG00000013153	raver1	100	66.038	ENSCVAG00000013971	raver1	98	65.432	Cyprinodon_variegatus
ENSIPUG00000013153	raver1	98	75.174	ENSDARG00000052617	raver1	98	74.059	Danio_rerio
ENSIPUG00000013153	raver1	57	62.300	ENSDNOG00000035742	-	57	61.721	Dasypus_novemcinctus
ENSIPUG00000013153	raver1	83	57.843	ENSDORG00000010106	-	98	48.108	Dipodomys_ordii
ENSIPUG00000013153	raver1	52	69.067	ENSEASG00005010544	-	68	69.067	Equus_asinus_asinus
ENSIPUG00000013153	raver1	89	55.882	ENSECAG00000024966	RAVER1	94	52.697	Equus_caballus
ENSIPUG00000013153	raver1	98	68.985	ENSELUG00000023287	raver1	98	69.541	Esox_lucius
ENSIPUG00000013153	raver1	89	56.863	ENSFCAG00000009435	RAVER1	94	52.690	Felis_catus
ENSIPUG00000013153	raver1	74	87.755	ENSFDAG00000015113	RAVER1	97	51.918	Fukomys_damarensis
ENSIPUG00000013153	raver1	94	64.448	ENSGMOG00000003649	raver1	99	64.164	Gadus_morhua
ENSIPUG00000013153	raver1	67	41.344	ENSGALG00000050608	-	61	40.037	Gallus_gallus
ENSIPUG00000013153	raver1	100	66.621	ENSGAFG00000015944	raver1	98	66.298	Gambusia_affinis
ENSIPUG00000013153	raver1	85	70.392	ENSGACG00000013818	raver1	99	61.781	Gasterosteus_aculeatus
ENSIPUG00000013153	raver1	83	65.239	ENSGAGG00000011748	-	96	63.728	Gopherus_agassizii
ENSIPUG00000013153	raver1	99	50.384	ENSGGOG00000006015	RAVER1	95	52.466	Gorilla_gorilla
ENSIPUG00000013153	raver1	99	68.493	ENSHBUG00000021210	raver1	98	66.479	Haplochromis_burtoni
ENSIPUG00000013153	raver1	81	59.804	ENSHGLG00000015460	RAVER1	97	50.411	Heterocephalus_glaber_female
ENSIPUG00000013153	raver1	81	59.804	ENSHGLG00100000812	RAVER1	97	50.411	Heterocephalus_glaber_male
ENSIPUG00000013153	raver1	100	64.071	ENSHCOG00000000449	raver1	96	64.266	Hippocampus_comes
ENSIPUG00000013153	raver1	84	59.144	ENSSTOG00000003241	RAVER1	98	51.957	Ictidomys_tridecemlineatus
ENSIPUG00000013153	raver1	83	58.846	ENSJJAG00000018219	-	98	51.096	Jaculus_jaculus
ENSIPUG00000013153	raver1	100	66.531	ENSKMAG00000017355	raver1	97	67.324	Kryptolebias_marmoratus
ENSIPUG00000013153	raver1	92	68.833	ENSLBEG00000008268	raver1	94	67.970	Labrus_bergylta
ENSIPUG00000013153	raver1	85	51.724	ENSLACG00000005809	-	99	51.793	Latimeria_chalumnae
ENSIPUG00000013153	raver1	92	62.207	ENSLOCG00000007500	raver1	98	59.558	Lepisosteus_oculatus
ENSIPUG00000013153	raver1	91	52.915	ENSLAFG00000003664	-	99	52.827	Loxodonta_africana
ENSIPUG00000013153	raver1	89	57.195	ENSMFAG00000037977	RAVER1	98	51.111	Macaca_fascicularis
ENSIPUG00000013153	raver1	89	57.195	ENSMMUG00000014897	RAVER1	98	51.111	Macaca_mulatta
ENSIPUG00000013153	raver1	89	57.195	ENSMNEG00000028390	RAVER1	98	51.111	Macaca_nemestrina
ENSIPUG00000013153	raver1	89	56.987	ENSMLEG00000041959	RAVER1	95	53.014	Mandrillus_leucophaeus
ENSIPUG00000013153	raver1	98	70.776	ENSMAMG00000012059	raver1	98	70.083	Mastacembelus_armatus
ENSIPUG00000013153	raver1	100	67.755	ENSMZEG00005019002	raver1	98	68.326	Maylandia_zebra
ENSIPUG00000013153	raver1	81	60.784	ENSMAUG00000017948	-	98	52.103	Mesocricetus_auratus
ENSIPUG00000013153	raver1	99	50.996	ENSMICG00000010326	RAVER1	97	54.676	Microcebus_murinus
ENSIPUG00000013153	raver1	81	61.134	ENSMOCG00000015553	-	98	52.381	Microtus_ochrogaster
ENSIPUG00000013153	raver1	98	68.421	ENSMMOG00000012093	raver1	98	67.867	Mola_mola
ENSIPUG00000013153	raver1	90	51.590	ENSMODG00000005584	-	87	51.599	Monodelphis_domestica
ENSIPUG00000013153	raver1	100	67.619	ENSMALG00000016569	raver1	98	68.050	Monopterus_albus
ENSIPUG00000013153	raver1	81	59.804	MGP_CAROLIEiJ_G0031860	-	96	51.586	Mus_caroli
ENSIPUG00000013153	raver1	81	60.784	ENSMUSG00000010205	Raver1	80	60.784	Mus_musculus
ENSIPUG00000013153	raver1	81	60.784	MGP_PahariEiJ_G0014726	-	96	51.710	Mus_pahari
ENSIPUG00000013153	raver1	81	60.784	MGP_SPRETEiJ_G0032984	-	80	60.784	Mus_spretus
ENSIPUG00000013153	raver1	81	61.711	ENSMPUG00000006712	RAVER1	82	58.226	Mustela_putorius_furo
ENSIPUG00000013153	raver1	93	52.282	ENSMLUG00000012328	RAVER1	97	54.455	Myotis_lucifugus
ENSIPUG00000013153	raver1	81	59.756	ENSNGAG00000001260	-	97	51.595	Nannospalax_galili
ENSIPUG00000013153	raver1	100	61.808	ENSNBRG00000010139	raver1	98	61.728	Neolamprologus_brichardi
ENSIPUG00000013153	raver1	89	57.505	ENSNLEG00000012181	RAVER1	95	53.352	Nomascus_leucogenys
ENSIPUG00000013153	raver1	85	51.183	ENSMEUG00000003281	-	100	51.036	Notamacropus_eugenii
ENSIPUG00000013153	raver1	67	87.755	ENSODEG00000016260	RAVER1	76	87.755	Octodon_degus
ENSIPUG00000013153	raver1	92	69.440	ENSONIG00000001559	raver1	100	69.925	Oreochromis_niloticus
ENSIPUG00000013153	raver1	90	56.863	ENSOCUG00000020918	RAVER1	97	52.580	Oryctolagus_cuniculus
ENSIPUG00000013153	raver1	100	65.940	ENSORLG00000005458	raver1	98	65.235	Oryzias_latipes
ENSIPUG00000013153	raver1	100	66.076	ENSORLG00020004392	raver1	98	65.374	Oryzias_latipes_hni
ENSIPUG00000013153	raver1	100	65.804	ENSORLG00015017222	raver1	98	65.097	Oryzias_latipes_hsok
ENSIPUG00000013153	raver1	100	64.006	ENSOMEG00000023956	raver1	98	62.963	Oryzias_melastigma
ENSIPUG00000013153	raver1	93	52.610	ENSOGAG00000011071	RAVER1	95	52.610	Otolemur_garnettii
ENSIPUG00000013153	raver1	76	87.755	ENSOARG00000015886	RAVER1	95	52.276	Ovis_aries
ENSIPUG00000013153	raver1	99	50.384	ENSPPAG00000002611	RAVER1	95	52.603	Pan_paniscus
ENSIPUG00000013153	raver1	89	56.863	ENSPPRG00000009912	RAVER1	94	52.909	Panthera_pardus
ENSIPUG00000013153	raver1	99	50.384	ENSPTRG00000010466	RAVER1	95	52.603	Pan_troglodytes
ENSIPUG00000013153	raver1	89	57.013	ENSPANG00000004122	RAVER1	95	53.159	Papio_anubis
ENSIPUG00000013153	raver1	81	60.931	ENSPEMG00000016411	-	98	52.174	Peromyscus_maniculatus_bairdii
ENSIPUG00000013153	raver1	93	54.015	ENSPCIG00000018695	-	98	53.139	Phascolarctos_cinereus
ENSIPUG00000013153	raver1	100	64.745	ENSPFOG00000007016	raver1	98	66.303	Poecilia_formosa
ENSIPUG00000013153	raver1	100	61.222	ENSPLAG00000020793	raver1	97	64.766	Poecilia_latipinna
ENSIPUG00000013153	raver1	100	67.164	ENSPMEG00000011220	raver1	98	66.575	Poecilia_mexicana
ENSIPUG00000013153	raver1	100	64.481	ENSPREG00000006864	raver1	98	64.580	Poecilia_reticulata
ENSIPUG00000013153	raver1	83	61.155	ENSPPYG00000010514	RAVER1	81	53.508	Pongo_abelii
ENSIPUG00000013153	raver1	99	49.178	ENSPCOG00000026605	RAVER1	95	52.885	Propithecus_coquereli
ENSIPUG00000013153	raver1	74	87.755	ENSPVAG00000003689	RAVER1	97	53.086	Pteropus_vampyrus
ENSIPUG00000013153	raver1	100	65.259	ENSPNYG00000013284	raver1	98	65.374	Pundamilia_nyererei
ENSIPUG00000013153	raver1	98	80.249	ENSPNAG00000015476	raver1	98	80.249	Pygocentrus_nattereri
ENSIPUG00000013153	raver1	81	60.784	ENSRNOG00000020710	Raver1	96	52.322	Rattus_norvegicus
ENSIPUG00000013153	raver1	99	50.938	ENSRBIG00000034702	RAVER1	95	53.857	Rhinopithecus_bieti
ENSIPUG00000013153	raver1	99	51.387	ENSRROG00000031186	RAVER1	95	53.857	Rhinopithecus_roxellana
ENSIPUG00000013153	raver1	93	53.064	ENSSBOG00000023423	RAVER1	95	53.456	Saimiri_boliviensis_boliviensis
ENSIPUG00000013153	raver1	85	53.474	ENSSHAG00000008181	-	90	53.506	Sarcophilus_harrisii
ENSIPUG00000013153	raver1	97	69.437	ENSSMAG00000004546	raver1	97	68.144	Scophthalmus_maximus
ENSIPUG00000013153	raver1	98	71.330	ENSSDUG00000021063	raver1	98	70.637	Seriola_dumerili
ENSIPUG00000013153	raver1	98	71.330	ENSSLDG00000014505	raver1	98	70.637	Seriola_lalandi_dorsalis
ENSIPUG00000013153	raver1	98	70.776	ENSSPAG00000000688	raver1	98	70.083	Stegastes_partitus
ENSIPUG00000013153	raver1	73	87.755	ENSSSCG00000013650	-	78	87.755	Sus_scrofa
ENSIPUG00000013153	raver1	97	66.434	ENSTRUG00000025641	raver1	97	65.734	Takifugu_rubripes
ENSIPUG00000013153	raver1	83	60.317	ENSTTRG00000009552	RAVER1	97	53.762	Tursiops_truncatus
ENSIPUG00000013153	raver1	89	56.863	ENSUAMG00000020385	RAVER1	94	52.295	Ursus_americanus
ENSIPUG00000013153	raver1	99	50.328	ENSVVUG00000028976	RAVER1	96	52.999	Vulpes_vulpes
ENSIPUG00000013153	raver1	100	50.996	ENSXETG00000011622	raver1	95	53.266	Xenopus_tropicalis
ENSIPUG00000013153	raver1	100	67.436	ENSXCOG00000016368	raver1	98	66.851	Xiphophorus_couchianus
ENSIPUG00000013153	raver1	100	67.300	ENSXMAG00000000217	raver1	98	66.713	Xiphophorus_maculatus