EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013170 (Gene tree)
Gene ID: 108264728
Gene Symbol: CSTF3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 30377 bases
Position: chr4:7345180-7375556
Accession: 108264728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019616	Suf	PF05843.14	4.9e-84	1	1
ENSIPUP00000019654	Suf	PF05843.14	1.4e-83	1	1
ENSIPUP00000019590	Suf	PF05843.14	1.5e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020439	-	4889	XM_017466523	ENSIPUP00000019590	716 (aa)	XP_017322012	W5ULJ5
ENSIPUT00000020466	-	4772	-	ENSIPUP00000019616	677 (aa)	-	-
ENSIPUT00000020505	-	2136	-	ENSIPUP00000019654	711 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000013170's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013170	CSTF3	100	90.237	ENSG00000176102	CSTF3	100	90.237	Homo_sapiens
ENSIPUG00000013170	CSTF3	100	93.305	ENSAPOG00000014054	cstf3	100	93.305	Acanthochromis_polyacanthus
ENSIPUG00000013170	CSTF3	99	90.691	ENSAMEG00000007187	CSTF3	98	90.691	Ailuropoda_melanoleuca
ENSIPUG00000013170	CSTF3	88	88.462	ENSACIG00000005539	cstf3	100	88.462	Amphilophus_citrinellus
ENSIPUG00000013170	CSTF3	100	93.305	ENSAOCG00000010930	cstf3	100	93.305	Amphiprion_ocellaris
ENSIPUG00000013170	CSTF3	100	93.305	ENSAPEG00000007903	cstf3	100	93.305	Amphiprion_percula
ENSIPUG00000013170	CSTF3	100	92.887	ENSATEG00000000190	cstf3	100	92.887	Anabas_testudineus
ENSIPUG00000013170	CSTF3	99	90.819	ENSAPLG00000007217	CSTF3	100	90.819	Anas_platyrhynchos
ENSIPUG00000013170	CSTF3	100	90.808	ENSACAG00000002823	CSTF3	100	90.808	Anolis_carolinensis
ENSIPUG00000013170	CSTF3	100	90.237	ENSANAG00000020699	CSTF3	95	96.481	Aotus_nancymaae
ENSIPUG00000013170	CSTF3	99	94.034	ENSACLG00000007820	cstf3	100	93.166	Astatotilapia_calliptera
ENSIPUG00000013170	CSTF3	100	94.003	ENSAMXG00000014198	cstf3	100	94.282	Astyanax_mexicanus
ENSIPUG00000013170	CSTF3	100	90.237	ENSBTAG00000008617	CSTF3	100	90.653	Bos_taurus
ENSIPUG00000013170	CSTF3	99	47.263	WBGene00006307	suf-1	99	47.490	Caenorhabditis_elegans
ENSIPUG00000013170	CSTF3	100	90.237	ENSCJAG00000005533	CSTF3	100	90.560	Callithrix_jacchus
ENSIPUG00000013170	CSTF3	100	90.377	ENSCAFG00000007264	CSTF3	100	90.377	Canis_familiaris
ENSIPUG00000013170	CSTF3	99	90.832	ENSCAFG00020002715	CSTF3	99	90.832	Canis_lupus_dingo
ENSIPUG00000013170	CSTF3	99	89.616	ENSCHIG00000016418	CSTF3	100	90.560	Capra_hircus
ENSIPUG00000013170	CSTF3	99	90.832	ENSTSYG00000000451	CSTF3	99	96.889	Carlito_syrichta
ENSIPUG00000013170	CSTF3	84	88.915	ENSCAPG00000010958	CSTF3	98	88.915	Cavia_aperea
ENSIPUG00000013170	CSTF3	100	90.098	ENSCPOG00000005545	CSTF3	100	90.098	Cavia_porcellus
ENSIPUG00000013170	CSTF3	100	90.237	ENSCCAG00000024790	CSTF3	96	96.889	Cebus_capucinus
ENSIPUG00000013170	CSTF3	100	90.237	ENSCATG00000007080	CSTF3	100	90.560	Cercocebus_atys
ENSIPUG00000013170	CSTF3	100	90.237	ENSCLAG00000016179	CSTF3	100	90.237	Chinchilla_lanigera
ENSIPUG00000013170	CSTF3	82	96.617	ENSCHOG00000002497	CSTF3	79	96.617	Choloepus_hoffmanni
ENSIPUG00000013170	CSTF3	100	90.390	ENSCPBG00000006753	CSTF3	100	90.390	Chrysemys_picta_bellii
ENSIPUG00000013170	CSTF3	99	61.992	ENSCING00000006401	-	99	61.464	Ciona_intestinalis
ENSIPUG00000013170	CSTF3	99	62.219	ENSCSAVG00000004851	-	100	62.219	Ciona_savignyi
ENSIPUG00000013170	CSTF3	100	90.237	ENSCANG00000035468	CSTF3	100	90.560	Colobus_angolensis_palliatus
ENSIPUG00000013170	CSTF3	100	90.098	ENSCGRG00001014773	Cstf3	100	90.098	Cricetulus_griseus_chok1gshd
ENSIPUG00000013170	CSTF3	100	90.098	ENSCGRG00000004142	Cstf3	100	90.098	Cricetulus_griseus_crigri
ENSIPUG00000013170	CSTF3	100	93.296	ENSCSEG00000014283	cstf3	100	93.296	Cynoglossus_semilaevis
ENSIPUG00000013170	CSTF3	100	92.887	ENSCVAG00000019739	cstf3	100	92.887	Cyprinodon_variegatus
ENSIPUG00000013170	CSTF3	100	93.156	ENSDARG00000018904	cstf3	100	93.156	Danio_rerio
ENSIPUG00000013170	CSTF3	99	90.973	ENSDNOG00000007366	CSTF3	99	90.973	Dasypus_novemcinctus
ENSIPUG00000013170	CSTF3	99	84.000	ENSDORG00000005898	Cstf3	99	84.000	Dipodomys_ordii
ENSIPUG00000013170	CSTF3	99	56.885	FBgn0003559	su(f)	98	56.885	Drosophila_melanogaster
ENSIPUG00000013170	CSTF3	90	85.202	ENSETEG00000017097	CSTF3	90	85.202	Echinops_telfairi
ENSIPUG00000013170	CSTF3	85	74.461	ENSEBUG00000015459	cstf3	96	74.461	Eptatretus_burgeri
ENSIPUG00000013170	CSTF3	98	91.000	ENSEASG00005019884	CSTF3	97	96.256	Equus_asinus_asinus
ENSIPUG00000013170	CSTF3	98	91.000	ENSECAG00000023338	CSTF3	97	96.256	Equus_caballus
ENSIPUG00000013170	CSTF3	100	84.798	ENSEEUG00000015167	CSTF3	100	84.798	Erinaceus_europaeus
ENSIPUG00000013170	CSTF3	100	91.911	ENSELUG00000023393	cstf3	100	91.911	Esox_lucius
ENSIPUG00000013170	CSTF3	100	90.377	ENSFCAG00000030711	CSTF3	100	90.377	Felis_catus
ENSIPUG00000013170	CSTF3	93	92.436	ENSFALG00000010764	CSTF3	100	89.555	Ficedula_albicollis
ENSIPUG00000013170	CSTF3	100	90.237	ENSFDAG00000012082	CSTF3	100	90.237	Fukomys_damarensis
ENSIPUG00000013170	CSTF3	100	92.190	ENSFHEG00000020623	cstf3	100	92.190	Fundulus_heteroclitus
ENSIPUG00000013170	CSTF3	100	93.036	ENSGMOG00000012275	cstf3	100	93.036	Gadus_morhua
ENSIPUG00000013170	CSTF3	99	90.678	ENSGALG00000011685	CSTF3	99	90.678	Gallus_gallus
ENSIPUG00000013170	CSTF3	100	92.748	ENSGAFG00000002181	cstf3	100	92.748	Gambusia_affinis
ENSIPUG00000013170	CSTF3	100	92.887	ENSGACG00000015997	cstf3	100	92.887	Gasterosteus_aculeatus
ENSIPUG00000013170	CSTF3	100	90.669	ENSGAGG00000006200	CSTF3	100	90.669	Gopherus_agassizii
ENSIPUG00000013170	CSTF3	99	85.331	ENSGGOG00000026591	CSTF3	96	92.222	Gorilla_gorilla
ENSIPUG00000013170	CSTF3	99	94.034	ENSHBUG00000016656	cstf3	100	93.166	Haplochromis_burtoni
ENSIPUG00000013170	CSTF3	100	90.237	ENSHGLG00000017834	CSTF3	100	90.237	Heterocephalus_glaber_female
ENSIPUG00000013170	CSTF3	100	90.237	ENSHGLG00100018042	CSTF3	100	90.237	Heterocephalus_glaber_male
ENSIPUG00000013170	CSTF3	99	91.773	ENSHCOG00000015218	cstf3	100	91.074	Hippocampus_comes
ENSIPUG00000013170	CSTF3	100	90.237	ENSSTOG00000013306	CSTF3	100	90.237	Ictidomys_tridecemlineatus
ENSIPUG00000013170	CSTF3	99	79.632	ENSJJAG00000018430	Cstf3	98	79.632	Jaculus_jaculus
ENSIPUG00000013170	CSTF3	100	92.050	ENSKMAG00000010916	cstf3	100	92.050	Kryptolebias_marmoratus
ENSIPUG00000013170	CSTF3	100	92.887	ENSLBEG00000002306	cstf3	100	92.887	Labrus_bergylta
ENSIPUG00000013170	CSTF3	100	91.061	ENSLACG00000017296	CSTF3	100	91.061	Latimeria_chalumnae
ENSIPUG00000013170	CSTF3	100	93.305	ENSLOCG00000004415	cstf3	100	93.305	Lepisosteus_oculatus
ENSIPUG00000013170	CSTF3	100	90.377	ENSLAFG00000008712	CSTF3	100	90.377	Loxodonta_africana
ENSIPUG00000013170	CSTF3	100	90.237	ENSMFAG00000029516	CSTF3	100	90.560	Macaca_fascicularis
ENSIPUG00000013170	CSTF3	100	90.237	ENSMMUG00000002542	CSTF3	100	90.237	Macaca_mulatta
ENSIPUG00000013170	CSTF3	100	90.237	ENSMNEG00000021807	CSTF3	100	90.560	Macaca_nemestrina
ENSIPUG00000013170	CSTF3	100	90.237	ENSMLEG00000039594	CSTF3	97	95.111	Mandrillus_leucophaeus
ENSIPUG00000013170	CSTF3	100	93.584	ENSMAMG00000020423	cstf3	100	93.584	Mastacembelus_armatus
ENSIPUG00000013170	CSTF3	99	94.034	ENSMZEG00005012082	cstf3	100	93.166	Maylandia_zebra
ENSIPUG00000013170	CSTF3	99	90.678	ENSMGAG00000001383	CSTF3	99	90.678	Meleagris_gallopavo
ENSIPUG00000013170	CSTF3	100	89.958	ENSMAUG00000002487	Cstf3	100	89.958	Mesocricetus_auratus
ENSIPUG00000013170	CSTF3	100	90.237	ENSMICG00000004784	CSTF3	100	90.560	Microcebus_murinus
ENSIPUG00000013170	CSTF3	100	90.098	ENSMOCG00000017583	Cstf3	100	90.098	Microtus_ochrogaster
ENSIPUG00000013170	CSTF3	99	93.352	ENSMMOG00000016026	cstf3	94	93.352	Mola_mola
ENSIPUG00000013170	CSTF3	100	78.940	ENSMODG00000025205	-	100	78.940	Monodelphis_domestica
ENSIPUG00000013170	CSTF3	100	90.098	ENSMODG00000009745	-	100	90.098	Monodelphis_domestica
ENSIPUG00000013170	CSTF3	100	93.166	ENSMALG00000012050	cstf3	100	93.166	Monopterus_albus
ENSIPUG00000013170	CSTF3	100	90.098	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.098	Mus_caroli
ENSIPUG00000013170	CSTF3	100	90.098	ENSMUSG00000027176	Cstf3	100	90.098	Mus_musculus
ENSIPUG00000013170	CSTF3	100	90.098	MGP_PahariEiJ_G0025464	Cstf3	100	90.098	Mus_pahari
ENSIPUG00000013170	CSTF3	100	90.098	MGP_SPRETEiJ_G0024939	Cstf3	100	90.098	Mus_spretus
ENSIPUG00000013170	CSTF3	100	90.237	ENSMPUG00000011457	CSTF3	100	90.237	Mustela_putorius_furo
ENSIPUG00000013170	CSTF3	100	90.449	ENSMLUG00000003073	-	99	90.832	Myotis_lucifugus
ENSIPUG00000013170	CSTF3	100	87.727	ENSMLUG00000026022	-	100	87.727	Myotis_lucifugus
ENSIPUG00000013170	CSTF3	100	89.958	ENSNGAG00000010677	Cstf3	100	89.958	Nannospalax_galili
ENSIPUG00000013170	CSTF3	88	93.910	ENSNBRG00000007345	cstf3	100	93.910	Neolamprologus_brichardi
ENSIPUG00000013170	CSTF3	100	90.237	ENSNLEG00000017901	CSTF3	97	94.667	Nomascus_leucogenys
ENSIPUG00000013170	CSTF3	73	90.249	ENSMEUG00000005640	-	100	90.249	Notamacropus_eugenii
ENSIPUG00000013170	CSTF3	66	92.424	ENSOPRG00000000199	-	66	92.424	Ochotona_princeps
ENSIPUG00000013170	CSTF3	89	78.459	ENSODEG00000006311	-	97	78.459	Octodon_degus
ENSIPUG00000013170	CSTF3	100	90.237	ENSODEG00000016737	-	100	90.237	Octodon_degus
ENSIPUG00000013170	CSTF3	99	94.034	ENSONIG00000005563	cstf3	100	93.166	Oreochromis_niloticus
ENSIPUG00000013170	CSTF3	91	90.000	ENSOANG00000015140	CSTF3	100	90.000	Ornithorhynchus_anatinus
ENSIPUG00000013170	CSTF3	100	90.098	ENSOCUG00000015417	CSTF3	100	90.098	Oryctolagus_cuniculus
ENSIPUG00000013170	CSTF3	100	91.760	ENSORLG00000009762	cstf3	100	91.760	Oryzias_latipes
ENSIPUG00000013170	CSTF3	100	91.760	ENSORLG00020005540	cstf3	100	91.760	Oryzias_latipes_hni
ENSIPUG00000013170	CSTF3	100	91.620	ENSORLG00015003551	cstf3	100	91.620	Oryzias_latipes_hsok
ENSIPUG00000013170	CSTF3	100	92.039	ENSOMEG00000003848	cstf3	100	92.039	Oryzias_melastigma
ENSIPUG00000013170	CSTF3	100	89.722	ENSOGAG00000010229	CSTF3	100	89.722	Otolemur_garnettii
ENSIPUG00000013170	CSTF3	90	90.513	ENSOARG00000017271	CSTF3	99	90.513	Ovis_aries
ENSIPUG00000013170	CSTF3	99	87.729	ENSPPAG00000027358	CSTF3	99	87.729	Pan_paniscus
ENSIPUG00000013170	CSTF3	100	90.377	ENSPPRG00000016852	CSTF3	100	90.377	Panthera_pardus
ENSIPUG00000013170	CSTF3	100	90.377	ENSPTIG00000008716	CSTF3	100	90.377	Panthera_tigris_altaica
ENSIPUG00000013170	CSTF3	100	90.237	ENSPTRG00000003485	CSTF3	100	90.237	Pan_troglodytes
ENSIPUG00000013170	CSTF3	100	90.237	ENSPANG00000013722	CSTF3	97	95.111	Papio_anubis
ENSIPUG00000013170	CSTF3	100	92.598	ENSPKIG00000023648	cstf3	100	92.598	Paramormyrops_kingsleyae
ENSIPUG00000013170	CSTF3	100	90.669	ENSPSIG00000009173	CSTF3	100	90.669	Pelodiscus_sinensis
ENSIPUG00000013170	CSTF3	76	97.212	ENSPMGG00000000164	cstf3	99	96.527	Periophthalmus_magnuspinnatus
ENSIPUG00000013170	CSTF3	100	90.098	ENSPEMG00000011481	Cstf3	100	90.098	Peromyscus_maniculatus_bairdii
ENSIPUG00000013170	CSTF3	99	77.964	ENSPMAG00000007282	cstf3	99	78.711	Petromyzon_marinus
ENSIPUG00000013170	CSTF3	100	76.184	ENSPCIG00000030419	-	90	76.462	Phascolarctos_cinereus
ENSIPUG00000013170	CSTF3	100	88.219	ENSPCIG00000026406	-	100	90.240	Phascolarctos_cinereus
ENSIPUG00000013170	CSTF3	100	92.887	ENSPFOG00000017239	cstf3	100	92.887	Poecilia_formosa
ENSIPUG00000013170	CSTF3	100	92.748	ENSPLAG00000009456	cstf3	100	92.748	Poecilia_latipinna
ENSIPUG00000013170	CSTF3	100	92.887	ENSPMEG00000010320	cstf3	100	92.887	Poecilia_mexicana
ENSIPUG00000013170	CSTF3	100	92.887	ENSPREG00000013549	cstf3	100	92.887	Poecilia_reticulata
ENSIPUG00000013170	CSTF3	100	90.237	ENSPPYG00000003375	CSTF3	100	90.237	Pongo_abelii
ENSIPUG00000013170	CSTF3	71	96.864	ENSPCAG00000008025	-	71	96.864	Procavia_capensis
ENSIPUG00000013170	CSTF3	100	85.216	ENSPCOG00000014417	CSTF3	100	85.216	Propithecus_coquereli
ENSIPUG00000013170	CSTF3	100	85.216	ENSPVAG00000002350	CSTF3	100	85.216	Pteropus_vampyrus
ENSIPUG00000013170	CSTF3	99	94.034	ENSPNYG00000018259	cstf3	100	93.166	Pundamilia_nyererei
ENSIPUG00000013170	CSTF3	100	95.112	ENSPNAG00000020182	cstf3	100	95.112	Pygocentrus_nattereri
ENSIPUG00000013170	CSTF3	88	90.080	ENSRNOG00000012089	Cstf3	100	90.080	Rattus_norvegicus
ENSIPUG00000013170	CSTF3	99	89.704	ENSRBIG00000044258	CSTF3	100	90.560	Rhinopithecus_bieti
ENSIPUG00000013170	CSTF3	100	90.237	ENSRROG00000043450	CSTF3	100	90.560	Rhinopithecus_roxellana
ENSIPUG00000013170	CSTF3	100	90.237	ENSSBOG00000024764	CSTF3	98	96.889	Saimiri_boliviensis_boliviensis
ENSIPUG00000013170	CSTF3	99	90.537	ENSSHAG00000018128	-	99	90.537	Sarcophilus_harrisii
ENSIPUG00000013170	CSTF3	100	81.013	ENSSHAG00000003135	-	99	80.866	Sarcophilus_harrisii
ENSIPUG00000013170	CSTF3	100	92.737	ENSSFOG00015022133	cstf3	100	92.737	Scleropages_formosus
ENSIPUG00000013170	CSTF3	100	93.166	ENSSMAG00000002197	cstf3	100	93.166	Scophthalmus_maximus
ENSIPUG00000013170	CSTF3	100	93.445	ENSSDUG00000020426	cstf3	100	93.445	Seriola_dumerili
ENSIPUG00000013170	CSTF3	100	93.724	ENSSLDG00000025649	cstf3	100	93.724	Seriola_lalandi_dorsalis
ENSIPUG00000013170	CSTF3	100	89.958	ENSSARG00000000391	CSTF3	100	89.958	Sorex_araneus
ENSIPUG00000013170	CSTF3	97	90.593	ENSSPUG00000010546	CSTF3	100	90.593	Sphenodon_punctatus
ENSIPUG00000013170	CSTF3	100	93.305	ENSSPAG00000004958	cstf3	100	93.305	Stegastes_partitus
ENSIPUG00000013170	CSTF3	99	90.678	ENSSSCG00000040954	CSTF3	100	89.804	Sus_scrofa
ENSIPUG00000013170	CSTF3	99	90.510	ENSTGUG00000005010	CSTF3	99	90.510	Taeniopygia_guttata
ENSIPUG00000013170	CSTF3	100	91.911	ENSTRUG00000004959	cstf3	100	91.911	Takifugu_rubripes
ENSIPUG00000013170	CSTF3	99	93.211	ENSTNIG00000013811	cstf3	98	93.211	Tetraodon_nigroviridis
ENSIPUG00000013170	CSTF3	90	87.850	ENSTBEG00000001544	CSTF3	90	87.850	Tupaia_belangeri
ENSIPUG00000013170	CSTF3	100	87.169	ENSTTRG00000016366	CSTF3	100	87.169	Tursiops_truncatus
ENSIPUG00000013170	CSTF3	99	90.550	ENSUMAG00000018971	CSTF3	100	90.240	Ursus_maritimus
ENSIPUG00000013170	CSTF3	100	90.098	ENSVPAG00000007800	CSTF3	100	90.098	Vicugna_pacos
ENSIPUG00000013170	CSTF3	99	90.832	ENSVVUG00000014938	CSTF3	100	90.560	Vulpes_vulpes
ENSIPUG00000013170	CSTF3	89	75.781	ENSXETG00000021399	cstf3	100	77.023	Xenopus_tropicalis
ENSIPUG00000013170	CSTF3	67	41.909	ENSXETG00000017946	-	100	41.770	Xenopus_tropicalis
ENSIPUG00000013170	CSTF3	88	92.788	ENSXCOG00000011741	cstf3	100	92.788	Xiphophorus_couchianus
ENSIPUG00000013170	CSTF3	100	92.608	ENSXMAG00000009545	cstf3	100	92.608	Xiphophorus_maculatus