EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013171 (Gene tree)
Gene ID: 108266286
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 14632 bases
Position: chr6:29921134-29935765
Accession: 108266286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019503	SF3b1	PF08920.10	2.4e-47	1	1
ENSIPUP00000019553	SF3b1	PF08920.10	3.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020347	-	7945	XM_017469378	ENSIPUP00000019503	1314 (aa)	XP_017324867	A0A2D0R2M8
ENSIPUT00000020401	-	3888	-	ENSIPUP00000019553	1295 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000013171's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013171's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013171	sf3b1	100	93.997	ENSG00000115524	SF3B1	100	93.997	Homo_sapiens
ENSIPUG00000013171	sf3b1	100	96.806	ENSAPOG00000011894	sf3b1	100	96.806	Acanthochromis_polyacanthus
ENSIPUG00000013171	sf3b1	99	93.884	ENSAMEG00000013809	SF3B1	99	93.884	Ailuropoda_melanoleuca
ENSIPUG00000013171	sf3b1	100	95.817	ENSACIG00000020910	sf3b1	97	95.817	Amphilophus_citrinellus
ENSIPUG00000013171	sf3b1	100	96.806	ENSAOCG00000004478	sf3b1	100	96.806	Amphiprion_ocellaris
ENSIPUG00000013171	sf3b1	100	96.806	ENSAPEG00000012937	sf3b1	100	96.806	Amphiprion_percula
ENSIPUG00000013171	sf3b1	100	96.882	ENSATEG00000020435	sf3b1	100	96.882	Anabas_testudineus
ENSIPUG00000013171	sf3b1	99	94.100	ENSAPLG00000003993	SF3B1	99	94.100	Anas_platyrhynchos
ENSIPUG00000013171	sf3b1	100	93.992	ENSACAG00000009612	SF3B1	100	93.992	Anolis_carolinensis
ENSIPUG00000013171	sf3b1	100	93.997	ENSANAG00000021577	SF3B1	100	95.291	Aotus_nancymaae
ENSIPUG00000013171	sf3b1	100	95.741	ENSACLG00000023470	sf3b1	100	95.741	Astatotilapia_calliptera
ENSIPUG00000013171	sf3b1	100	98.631	ENSAMXG00000002219	sf3b1	100	98.631	Astyanax_mexicanus
ENSIPUG00000013171	sf3b1	100	93.997	ENSBTAG00000008915	SF3B1	100	93.997	Bos_taurus
ENSIPUG00000013171	sf3b1	99	65.214	WBGene00011605	sftb-1	99	65.214	Caenorhabditis_elegans
ENSIPUG00000013171	sf3b1	100	93.997	ENSCJAG00000003902	SF3B1	100	93.997	Callithrix_jacchus
ENSIPUG00000013171	sf3b1	100	93.997	ENSCAFG00000010826	SF3B1	100	93.997	Canis_familiaris
ENSIPUG00000013171	sf3b1	100	93.997	ENSCAFG00020004750	SF3B1	100	93.997	Canis_lupus_dingo
ENSIPUG00000013171	sf3b1	100	93.997	ENSCHIG00000015226	SF3B1	100	93.997	Capra_hircus
ENSIPUG00000013171	sf3b1	100	93.921	ENSTSYG00000009214	SF3B1	100	93.921	Carlito_syrichta
ENSIPUG00000013171	sf3b1	99	93.826	ENSCAPG00000006547	SF3B1	99	93.826	Cavia_aperea
ENSIPUG00000013171	sf3b1	99	93.951	ENSCPOG00000009353	SF3B1	100	93.951	Cavia_porcellus
ENSIPUG00000013171	sf3b1	100	93.997	ENSCCAG00000020506	SF3B1	100	93.997	Cebus_capucinus
ENSIPUG00000013171	sf3b1	100	93.997	ENSCATG00000035735	SF3B1	100	93.997	Cercocebus_atys
ENSIPUG00000013171	sf3b1	99	93.956	ENSCLAG00000014767	SF3B1	99	93.956	Chinchilla_lanigera
ENSIPUG00000013171	sf3b1	100	93.997	ENSCSAG00000011505	SF3B1	100	93.997	Chlorocebus_sabaeus
ENSIPUG00000013171	sf3b1	77	92.702	ENSCHOG00000009860	SF3B1	76	92.702	Choloepus_hoffmanni
ENSIPUG00000013171	sf3b1	100	94.140	ENSCPBG00000021902	SF3B1	99	95.286	Chrysemys_picta_bellii
ENSIPUG00000013171	sf3b1	68	78.170	ENSCING00000002558	-	99	78.174	Ciona_intestinalis
ENSIPUG00000013171	sf3b1	99	79.910	ENSCSAVG00000002559	-	99	80.000	Ciona_savignyi
ENSIPUG00000013171	sf3b1	100	93.997	ENSCANG00000029415	SF3B1	100	93.997	Colobus_angolensis_palliatus
ENSIPUG00000013171	sf3b1	100	93.997	ENSCGRG00001016990	Sf3b1	100	93.997	Cricetulus_griseus_chok1gshd
ENSIPUG00000013171	sf3b1	100	93.997	ENSCGRG00000005301	Sf3b1	100	93.997	Cricetulus_griseus_crigri
ENSIPUG00000013171	sf3b1	100	92.776	ENSCSEG00000003860	sf3b1	100	92.776	Cynoglossus_semilaevis
ENSIPUG00000013171	sf3b1	96	96.835	ENSCVAG00000003680	sf3b1	99	96.835	Cyprinodon_variegatus
ENSIPUG00000013171	sf3b1	100	96.809	ENSDARG00000056138	sf3b1	100	96.809	Danio_rerio
ENSIPUG00000013171	sf3b1	100	93.926	ENSDNOG00000011754	SF3B1	100	93.926	Dasypus_novemcinctus
ENSIPUG00000013171	sf3b1	99	91.960	ENSDORG00000002399	Sf3b1	100	91.960	Dipodomys_ordii
ENSIPUG00000013171	sf3b1	100	76.401	FBgn0031266	Sf3b1	100	76.401	Drosophila_melanogaster
ENSIPUG00000013171	sf3b1	83	92.936	ENSETEG00000009188	SF3B1	100	92.936	Echinops_telfairi
ENSIPUG00000013171	sf3b1	99	87.626	ENSEBUG00000004325	sf3b1	100	90.114	Eptatretus_burgeri
ENSIPUG00000013171	sf3b1	100	93.997	ENSEASG00005020159	SF3B1	98	93.997	Equus_asinus_asinus
ENSIPUG00000013171	sf3b1	100	93.997	ENSECAG00000021657	SF3B1	98	93.997	Equus_caballus
ENSIPUG00000013171	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSIPUG00000013171	sf3b1	100	96.148	ENSELUG00000005977	sf3b1	98	96.148	Esox_lucius
ENSIPUG00000013171	sf3b1	100	93.997	ENSFCAG00000005038	SF3B1	100	93.997	Felis_catus
ENSIPUG00000013171	sf3b1	99	94.023	ENSFALG00000004281	SF3B1	99	94.023	Ficedula_albicollis
ENSIPUG00000013171	sf3b1	100	93.997	ENSFDAG00000017510	SF3B1	100	93.997	Fukomys_damarensis
ENSIPUG00000013171	sf3b1	100	95.973	ENSFHEG00000014333	sf3b1	100	95.973	Fundulus_heteroclitus
ENSIPUG00000013171	sf3b1	100	95.751	ENSGMOG00000006773	sf3b1	100	95.903	Gadus_morhua
ENSIPUG00000013171	sf3b1	100	94.140	ENSGALG00000008038	SF3B1	100	94.140	Gallus_gallus
ENSIPUG00000013171	sf3b1	100	94.833	ENSGAFG00000000704	sf3b1	100	96.759	Gambusia_affinis
ENSIPUG00000013171	sf3b1	100	96.507	ENSGACG00000008839	sf3b1	100	96.507	Gasterosteus_aculeatus
ENSIPUG00000013171	sf3b1	100	93.500	ENSGAGG00000017478	SF3B1	100	93.500	Gopherus_agassizii
ENSIPUG00000013171	sf3b1	99	89.984	ENSGGOG00000009264	SF3B1	99	89.907	Gorilla_gorilla
ENSIPUG00000013171	sf3b1	99	95.811	ENSHBUG00000007705	sf3b1	99	95.811	Haplochromis_burtoni
ENSIPUG00000013171	sf3b1	99	93.956	ENSHGLG00000008285	-	99	93.956	Heterocephalus_glaber_female
ENSIPUG00000013171	sf3b1	99	91.966	ENSHGLG00100005535	-	99	91.966	Heterocephalus_glaber_male
ENSIPUG00000013171	sf3b1	100	96.369	ENSHCOG00000016775	sf3b1	100	96.369	Hippocampus_comes
ENSIPUG00000013171	sf3b1	100	93.997	ENSSTOG00000011034	SF3B1	100	93.997	Ictidomys_tridecemlineatus
ENSIPUG00000013171	sf3b1	99	93.932	ENSJJAG00000010903	Sf3b1	99	93.932	Jaculus_jaculus
ENSIPUG00000013171	sf3b1	100	96.282	ENSKMAG00000004009	sf3b1	100	96.282	Kryptolebias_marmoratus
ENSIPUG00000013171	sf3b1	100	96.654	ENSLBEG00000022208	sf3b1	100	96.654	Labrus_bergylta
ENSIPUG00000013171	sf3b1	99	91.096	ENSLACG00000014832	SF3B1	99	91.172	Latimeria_chalumnae
ENSIPUG00000013171	sf3b1	100	95.310	ENSLOCG00000003899	sf3b1	100	95.310	Lepisosteus_oculatus
ENSIPUG00000013171	sf3b1	100	93.997	ENSLAFG00000001956	SF3B1	100	93.997	Loxodonta_africana
ENSIPUG00000013171	sf3b1	99	93.956	ENSMMUG00000022430	SF3B1	99	93.956	Macaca_mulatta
ENSIPUG00000013171	sf3b1	100	93.997	ENSMNEG00000042333	SF3B1	100	95.291	Macaca_nemestrina
ENSIPUG00000013171	sf3b1	94	90.433	ENSMLEG00000026141	SF3B1	98	90.383	Mandrillus_leucophaeus
ENSIPUG00000013171	sf3b1	100	96.730	ENSMAMG00000010241	sf3b1	100	96.730	Mastacembelus_armatus
ENSIPUG00000013171	sf3b1	100	95.741	ENSMZEG00005021254	sf3b1	100	95.741	Maylandia_zebra
ENSIPUG00000013171	sf3b1	99	93.487	ENSMGAG00000007017	SF3B1	99	93.487	Meleagris_gallopavo
ENSIPUG00000013171	sf3b1	99	89.748	ENSMAUG00000009071	Sf3b1	99	89.748	Mesocricetus_auratus
ENSIPUG00000013171	sf3b1	100	93.997	ENSMICG00000013879	SF3B1	100	93.997	Microcebus_murinus
ENSIPUG00000013171	sf3b1	99	89.526	ENSMOCG00000000455	Sf3b1	99	89.526	Microtus_ochrogaster
ENSIPUG00000013171	sf3b1	84	96.091	ENSMMOG00000000475	sf3b1	100	96.091	Mola_mola
ENSIPUG00000013171	sf3b1	100	93.465	ENSMODG00000012275	SF3B1	100	93.465	Monodelphis_domestica
ENSIPUG00000013171	sf3b1	100	96.730	ENSMALG00000017211	sf3b1	100	96.730	Monopterus_albus
ENSIPUG00000013171	sf3b1	100	93.997	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.997	Mus_caroli
ENSIPUG00000013171	sf3b1	100	93.997	ENSMUSG00000025982	Sf3b1	100	93.997	Mus_musculus
ENSIPUG00000013171	sf3b1	100	93.997	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.997	Mus_spretus
ENSIPUG00000013171	sf3b1	100	93.997	ENSMPUG00000007799	SF3B1	100	93.997	Mustela_putorius_furo
ENSIPUG00000013171	sf3b1	100	92.857	ENSMLUG00000000840	SF3B1	100	92.857	Myotis_lucifugus
ENSIPUG00000013171	sf3b1	99	93.674	ENSNGAG00000021884	-	100	93.674	Nannospalax_galili
ENSIPUG00000013171	sf3b1	100	91.413	ENSNBRG00000015816	sf3b1	100	91.413	Neolamprologus_brichardi
ENSIPUG00000013171	sf3b1	100	93.997	ENSNLEG00000006861	SF3B1	100	93.997	Nomascus_leucogenys
ENSIPUG00000013171	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSIPUG00000013171	sf3b1	100	81.989	ENSOPRG00000008596	SF3B1	100	82.167	Ochotona_princeps
ENSIPUG00000013171	sf3b1	100	93.997	ENSODEG00000011153	-	100	93.997	Octodon_degus
ENSIPUG00000013171	sf3b1	100	95.741	ENSONIG00000013758	sf3b1	100	95.741	Oreochromis_niloticus
ENSIPUG00000013171	sf3b1	84	95.967	ENSOCUG00000012722	-	96	96.402	Oryctolagus_cuniculus
ENSIPUG00000013171	sf3b1	100	95.817	ENSORLG00000020219	sf3b1	100	95.817	Oryzias_latipes
ENSIPUG00000013171	sf3b1	100	95.817	ENSORLG00020001746	sf3b1	100	95.817	Oryzias_latipes_hni
ENSIPUG00000013171	sf3b1	64	93.957	ENSORLG00015001759	sf3b1	98	93.957	Oryzias_latipes_hsok
ENSIPUG00000013171	sf3b1	100	96.201	ENSOMEG00000019231	sf3b1	100	96.201	Oryzias_melastigma
ENSIPUG00000013171	sf3b1	100	93.997	ENSOARG00000015374	SF3B1	100	93.997	Ovis_aries
ENSIPUG00000013171	sf3b1	100	93.997	ENSPPAG00000035007	SF3B1	100	93.997	Pan_paniscus
ENSIPUG00000013171	sf3b1	100	93.997	ENSPPRG00000009090	SF3B1	100	93.997	Panthera_pardus
ENSIPUG00000013171	sf3b1	100	93.997	ENSPTIG00000021557	SF3B1	100	93.997	Panthera_tigris_altaica
ENSIPUG00000013171	sf3b1	99	86.836	ENSPTRG00000012771	SF3B1	99	86.836	Pan_troglodytes
ENSIPUG00000013171	sf3b1	100	93.997	ENSPANG00000013417	SF3B1	100	93.997	Papio_anubis
ENSIPUG00000013171	sf3b1	100	96.659	ENSPKIG00000000784	sf3b1	100	96.659	Paramormyrops_kingsleyae
ENSIPUG00000013171	sf3b1	99	94.319	ENSPSIG00000017222	SF3B1	98	94.319	Pelodiscus_sinensis
ENSIPUG00000013171	sf3b1	91	96.477	ENSPMGG00000004330	sf3b1	99	96.477	Periophthalmus_magnuspinnatus
ENSIPUG00000013171	sf3b1	99	93.956	ENSPEMG00000010699	Sf3b1	100	93.956	Peromyscus_maniculatus_bairdii
ENSIPUG00000013171	sf3b1	100	89.048	ENSPMAG00000001311	sf3b1	100	89.199	Petromyzon_marinus
ENSIPUG00000013171	sf3b1	100	93.541	ENSPCIG00000010642	SF3B1	100	93.541	Phascolarctos_cinereus
ENSIPUG00000013171	sf3b1	100	96.583	ENSPFOG00000000073	sf3b1	100	96.583	Poecilia_formosa
ENSIPUG00000013171	sf3b1	100	96.657	ENSPLAG00000002293	sf3b1	100	96.657	Poecilia_latipinna
ENSIPUG00000013171	sf3b1	100	96.657	ENSPMEG00000000446	sf3b1	98	96.657	Poecilia_mexicana
ENSIPUG00000013171	sf3b1	100	96.733	ENSPREG00000019652	sf3b1	100	96.733	Poecilia_reticulata
ENSIPUG00000013171	sf3b1	84	96.530	ENSPPYG00000013044	SF3B1	96	96.530	Pongo_abelii
ENSIPUG00000013171	sf3b1	100	93.845	ENSPCAG00000009292	SF3B1	100	93.845	Procavia_capensis
ENSIPUG00000013171	sf3b1	100	93.997	ENSPCOG00000024074	SF3B1	100	93.997	Propithecus_coquereli
ENSIPUG00000013171	sf3b1	100	93.997	ENSPVAG00000008302	SF3B1	100	93.997	Pteropus_vampyrus
ENSIPUG00000013171	sf3b1	100	95.665	ENSPNYG00000014939	sf3b1	100	95.665	Pundamilia_nyererei
ENSIPUG00000013171	sf3b1	100	97.871	ENSPNAG00000008288	sf3b1	100	97.871	Pygocentrus_nattereri
ENSIPUG00000013171	sf3b1	100	93.997	ENSRNOG00000013516	Sf3b1	100	93.997	Rattus_norvegicus
ENSIPUG00000013171	sf3b1	99	90.259	ENSRBIG00000026096	SF3B1	100	90.259	Rhinopithecus_bieti
ENSIPUG00000013171	sf3b1	100	93.997	ENSRROG00000031308	SF3B1	100	93.997	Rhinopithecus_roxellana
ENSIPUG00000013171	sf3b1	100	93.997	ENSSBOG00000020080	SF3B1	100	93.997	Saimiri_boliviensis_boliviensis
ENSIPUG00000013171	sf3b1	100	93.465	ENSSHAG00000017564	SF3B1	100	93.465	Sarcophilus_harrisii
ENSIPUG00000013171	sf3b1	100	96.578	ENSSFOG00015021535	sf3b1	100	96.578	Scleropages_formosus
ENSIPUG00000013171	sf3b1	99	96.889	ENSSMAG00000013977	sf3b1	99	96.889	Scophthalmus_maximus
ENSIPUG00000013171	sf3b1	100	96.578	ENSSDUG00000017422	sf3b1	100	96.578	Seriola_dumerili
ENSIPUG00000013171	sf3b1	100	96.654	ENSSLDG00000019495	sf3b1	100	96.654	Seriola_lalandi_dorsalis
ENSIPUG00000013171	sf3b1	76	98.768	ENSSARG00000007016	SF3B1	76	98.768	Sorex_araneus
ENSIPUG00000013171	sf3b1	100	94.064	ENSSPUG00000000410	SF3B1	100	94.064	Sphenodon_punctatus
ENSIPUG00000013171	sf3b1	100	96.730	ENSSPAG00000010451	sf3b1	99	96.730	Stegastes_partitus
ENSIPUG00000013171	sf3b1	91	93.589	ENSSSCG00000016075	SF3B1	100	95.291	Sus_scrofa
ENSIPUG00000013171	sf3b1	100	94.064	ENSTGUG00000010553	SF3B1	100	94.064	Taeniopygia_guttata
ENSIPUG00000013171	sf3b1	100	96.730	ENSTRUG00000015534	sf3b1	100	96.730	Takifugu_rubripes
ENSIPUG00000013171	sf3b1	85	97.521	ENSTBEG00000008714	SF3B1	93	97.521	Tupaia_belangeri
ENSIPUG00000013171	sf3b1	92	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSIPUG00000013171	sf3b1	94	84.553	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSIPUG00000013171	sf3b1	100	93.997	ENSUMAG00000020945	SF3B1	100	93.997	Ursus_maritimus
ENSIPUG00000013171	sf3b1	97	93.561	ENSVPAG00000005798	SF3B1	96	93.561	Vicugna_pacos
ENSIPUG00000013171	sf3b1	100	93.997	ENSVVUG00000025948	SF3B1	95	93.997	Vulpes_vulpes
ENSIPUG00000013171	sf3b1	100	92.553	ENSXETG00000013339	sf3b1	100	92.553	Xenopus_tropicalis
ENSIPUG00000013171	sf3b1	100	92.325	ENSXCOG00000018086	sf3b1	100	92.629	Xiphophorus_couchianus
ENSIPUG00000013171	sf3b1	100	96.733	ENSXMAG00000007369	sf3b1	100	96.733	Xiphophorus_maculatus