EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000013174 (Gene tree)
Gene ID: 108268967
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 15268 bases
Position: chr8:1739516-1754783
Accession: 108268967
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019508	RNA_pol_Rpb1_5	PF04998.17	2.7e-99	1	1
ENSIPUP00000019508	RNA_pol_Rpb1_4	PF05000.17	2.6e-21	1	1
ENSIPUP00000019508	RNA_pol_Rpb1_2	PF00623.20	1.4e-69	1	1
ENSIPUP00000019508	RNA_pol_Rpb1_3	PF04983.18	5.2e-39	1	1
ENSIPUP00000019508	RNA_pol_Rpb1_1	PF04997.12	1.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020352	-	5091	XM_017474390	ENSIPUP00000019508	1696 (aa)	XP_017329879	A0A2D0RH70

Gene Model

Click here to download ENSIPUG00000013174's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013174's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000013174	polr1a	67	33.223	ENSIPUG00000002613	Polr2a	57	33.040

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013174	polr1a	100	66.005	ENSG00000068654	POLR1A	100	66.140	Homo_sapiens
ENSIPUG00000013174	polr1a	69	73.595	ENSAPOG00000017945	polr1a	99	73.765	Acanthochromis_polyacanthus
ENSIPUG00000013174	polr1a	100	65.876	ENSAMEG00000005807	POLR1A	100	69.623	Ailuropoda_melanoleuca
ENSIPUG00000013174	polr1a	100	69.163	ENSACIG00000022147	polr1a	100	69.000	Amphilophus_citrinellus
ENSIPUG00000013174	polr1a	100	72.037	ENSAOCG00000017336	polr1a	100	74.823	Amphiprion_ocellaris
ENSIPUG00000013174	polr1a	100	71.921	ENSAPEG00000016105	polr1a	100	72.212	Amphiprion_percula
ENSIPUG00000013174	polr1a	100	71.979	ENSATEG00000016773	polr1a	100	71.963	Anabas_testudineus
ENSIPUG00000013174	polr1a	86	68.389	ENSAPLG00000013871	POLR1A	99	68.360	Anas_platyrhynchos
ENSIPUG00000013174	polr1a	99	64.822	ENSACAG00000012141	POLR1A	99	64.706	Anolis_carolinensis
ENSIPUG00000013174	polr1a	100	65.283	ENSANAG00000033927	POLR1A	100	65.914	Aotus_nancymaae
ENSIPUG00000013174	polr1a	100	67.075	ENSACLG00000020541	polr1a	100	67.213	Astatotilapia_calliptera
ENSIPUG00000013174	polr1a	100	65.933	ENSBTAG00000006481	POLR1A	100	66.183	Bos_taurus
ENSIPUG00000013174	polr1a	99	37.879	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSIPUG00000013174	polr1a	100	65.032	ENSCJAG00000019547	POLR1A	100	65.817	Callithrix_jacchus
ENSIPUG00000013174	polr1a	100	65.373	ENSCAFG00000007613	POLR1A	100	65.991	Canis_familiaris
ENSIPUG00000013174	polr1a	100	66.059	ENSCAFG00020014752	POLR1A	100	65.941	Canis_lupus_dingo
ENSIPUG00000013174	polr1a	100	66.103	ENSCHIG00000018204	POLR1A	100	66.064	Capra_hircus
ENSIPUG00000013174	polr1a	100	65.431	ENSTSYG00000002761	POLR1A	100	66.086	Carlito_syrichta
ENSIPUG00000013174	polr1a	97	62.232	ENSCAPG00000010132	POLR1A	100	62.740	Cavia_aperea
ENSIPUG00000013174	polr1a	100	65.280	ENSCPOG00000012350	POLR1A	100	65.794	Cavia_porcellus
ENSIPUG00000013174	polr1a	100	65.471	ENSCCAG00000019839	POLR1A	100	66.087	Cebus_capucinus
ENSIPUG00000013174	polr1a	100	65.436	ENSCATG00000029786	POLR1A	100	66.223	Cercocebus_atys
ENSIPUG00000013174	polr1a	100	64.611	ENSCLAG00000005187	POLR1A	100	65.185	Chinchilla_lanigera
ENSIPUG00000013174	polr1a	100	65.378	ENSCSAG00000016251	POLR1A	100	66.165	Chlorocebus_sabaeus
ENSIPUG00000013174	polr1a	99	68.966	ENSCPBG00000001115	POLR1A	99	69.334	Chrysemys_picta_bellii
ENSIPUG00000013174	polr1a	99	46.232	ENSCSAVG00000007184	-	99	46.145	Ciona_savignyi
ENSIPUG00000013174	polr1a	100	63.033	ENSCANG00000031785	POLR1A	100	63.316	Colobus_angolensis_palliatus
ENSIPUG00000013174	polr1a	96	65.792	ENSCGRG00001006651	Polr1a	100	66.149	Cricetulus_griseus_chok1gshd
ENSIPUG00000013174	polr1a	60	65.856	ENSCGRG00000010834	Polr1a	100	66.214	Cricetulus_griseus_crigri
ENSIPUG00000013174	polr1a	100	67.977	ENSCSEG00000020190	polr1a	100	68.054	Cynoglossus_semilaevis
ENSIPUG00000013174	polr1a	100	68.321	ENSCVAG00000020941	polr1a	100	68.775	Cyprinodon_variegatus
ENSIPUG00000013174	polr1a	100	77.752	ENSDARG00000098375	polr1a	100	77.752	Danio_rerio
ENSIPUG00000013174	polr1a	100	63.188	ENSDNOG00000010829	POLR1A	100	63.731	Dasypus_novemcinctus
ENSIPUG00000013174	polr1a	100	64.750	ENSDORG00000008298	Polr1a	100	65.360	Dipodomys_ordii
ENSIPUG00000013174	polr1a	79	44.029	FBgn0019938	RpI1	99	42.958	Drosophila_melanogaster
ENSIPUG00000013174	polr1a	71	83.871	ENSETEG00000000412	-	71	83.871	Echinops_telfairi
ENSIPUG00000013174	polr1a	89	47.215	ENSEBUG00000005667	-	99	47.674	Eptatretus_burgeri
ENSIPUG00000013174	polr1a	100	65.511	ENSEASG00005001625	POLR1A	100	66.589	Equus_asinus_asinus
ENSIPUG00000013174	polr1a	96	70.393	ENSECAG00000010092	POLR1A	100	70.393	Equus_caballus
ENSIPUG00000013174	polr1a	96	70.393	ENSECAG00000036306	-	100	70.393	Equus_caballus
ENSIPUG00000013174	polr1a	96	70.393	ENSECAG00000030510	-	100	70.393	Equus_caballus
ENSIPUG00000013174	polr1a	84	78.718	ENSEEUG00000000676	POLR1A	84	78.718	Erinaceus_europaeus
ENSIPUG00000013174	polr1a	100	75.263	ENSELUG00000012769	polr1a	99	75.552	Esox_lucius
ENSIPUG00000013174	polr1a	100	65.587	ENSFCAG00000008966	POLR1A	100	66.242	Felis_catus
ENSIPUG00000013174	polr1a	99	66.550	ENSFALG00000010082	POLR1A	99	67.609	Ficedula_albicollis
ENSIPUG00000013174	polr1a	100	65.107	ENSFDAG00000013726	POLR1A	100	65.932	Fukomys_damarensis
ENSIPUG00000013174	polr1a	100	66.842	ENSFHEG00000005996	polr1a	100	66.940	Fundulus_heteroclitus
ENSIPUG00000013174	polr1a	100	64.924	ENSGMOG00000002230	polr1a	100	65.003	Gadus_morhua
ENSIPUG00000013174	polr1a	90	64.377	ENSGALG00000038160	-	99	65.058	Gallus_gallus
ENSIPUG00000013174	polr1a	100	69.375	ENSGAFG00000015266	polr1a	100	69.100	Gambusia_affinis
ENSIPUG00000013174	polr1a	100	69.688	ENSGACG00000018791	polr1a	100	70.167	Gasterosteus_aculeatus
ENSIPUG00000013174	polr1a	89	69.836	ENSGAGG00000004984	-	99	70.118	Gopherus_agassizii
ENSIPUG00000013174	polr1a	100	65.265	ENSGGOG00000001788	POLR1A	100	66.050	Gorilla_gorilla
ENSIPUG00000013174	polr1a	90	69.151	ENSHBUG00000020021	polr1a	99	68.910	Haplochromis_burtoni
ENSIPUG00000013174	polr1a	100	65.336	ENSHGLG00000006334	POLR1A	100	65.872	Heterocephalus_glaber_female
ENSIPUG00000013174	polr1a	100	65.147	ENSHGLG00100006614	POLR1A	100	65.681	Heterocephalus_glaber_male
ENSIPUG00000013174	polr1a	100	66.783	ENSHCOG00000003345	polr1a	100	67.233	Hippocampus_comes
ENSIPUG00000013174	polr1a	100	64.535	ENSSTOG00000012580	POLR1A	100	65.523	Ictidomys_tridecemlineatus
ENSIPUG00000013174	polr1a	100	65.895	ENSJJAG00000013113	Polr1a	100	66.396	Jaculus_jaculus
ENSIPUG00000013174	polr1a	100	72.418	ENSKMAG00000007399	polr1a	100	72.190	Kryptolebias_marmoratus
ENSIPUG00000013174	polr1a	95	73.371	ENSLBEG00000015401	polr1a	99	73.699	Labrus_bergylta
ENSIPUG00000013174	polr1a	53	71.024	ENSLACG00000003218	polr1a	100	71.024	Latimeria_chalumnae
ENSIPUG00000013174	polr1a	100	72.685	ENSLOCG00000010881	polr1a	100	72.907	Lepisosteus_oculatus
ENSIPUG00000013174	polr1a	100	66.492	ENSLAFG00000014948	POLR1A	100	66.589	Loxodonta_africana
ENSIPUG00000013174	polr1a	100	65.378	ENSMFAG00000046097	POLR1A	100	66.165	Macaca_fascicularis
ENSIPUG00000013174	polr1a	100	65.320	ENSMMUG00000015815	POLR1A	100	66.108	Macaca_mulatta
ENSIPUG00000013174	polr1a	100	65.378	ENSMNEG00000043313	POLR1A	100	66.165	Macaca_nemestrina
ENSIPUG00000013174	polr1a	100	64.974	ENSMLEG00000042428	POLR1A	100	65.761	Mandrillus_leucophaeus
ENSIPUG00000013174	polr1a	100	71.948	ENSMAMG00000016565	polr1a	100	72.392	Mastacembelus_armatus
ENSIPUG00000013174	polr1a	100	71.512	ENSMZEG00005004915	polr1a	100	71.495	Maylandia_zebra
ENSIPUG00000013174	polr1a	99	64.497	ENSMGAG00000013111	POLR1A	99	64.563	Meleagris_gallopavo
ENSIPUG00000013174	polr1a	92	65.828	ENSMAUG00000008497	Polr1a	100	66.246	Mesocricetus_auratus
ENSIPUG00000013174	polr1a	100	66.089	ENSMICG00000000757	POLR1A	100	66.609	Microcebus_murinus
ENSIPUG00000013174	polr1a	100	66.203	ENSMOCG00000000122	Polr1a	100	66.551	Microtus_ochrogaster
ENSIPUG00000013174	polr1a	100	70.129	ENSMMOG00000010216	polr1a	100	70.334	Mola_mola
ENSIPUG00000013174	polr1a	100	62.006	ENSMODG00000009335	POLR1A	100	62.400	Monodelphis_domestica
ENSIPUG00000013174	polr1a	100	71.596	ENSMALG00000013363	polr1a	100	71.771	Monopterus_albus
ENSIPUG00000013174	polr1a	100	65.467	MGP_CAROLIEiJ_G0028494	Polr1a	100	65.567	Mus_caroli
ENSIPUG00000013174	polr1a	100	65.912	ENSMUSG00000049553	Polr1a	100	65.837	Mus_musculus
ENSIPUG00000013174	polr1a	100	65.623	MGP_PahariEiJ_G0022230	Polr1a	100	66.107	Mus_pahari
ENSIPUG00000013174	polr1a	100	64.846	MGP_SPRETEiJ_G0029499	Polr1a	100	64.676	Mus_spretus
ENSIPUG00000013174	polr1a	100	65.741	ENSMPUG00000009135	POLR1A	100	66.435	Mustela_putorius_furo
ENSIPUG00000013174	polr1a	100	65.247	ENSMLUG00000015723	POLR1A	100	65.726	Myotis_lucifugus
ENSIPUG00000013174	polr1a	100	65.084	ENSNGAG00000017907	Polr1a	100	65.431	Nannospalax_galili
ENSIPUG00000013174	polr1a	100	71.546	ENSNBRG00000000519	polr1a	100	71.570	Neolamprologus_brichardi
ENSIPUG00000013174	polr1a	100	63.647	ENSNLEG00000002264	POLR1A	100	64.306	Nomascus_leucogenys
ENSIPUG00000013174	polr1a	79	87.402	ENSMEUG00000011665	-	79	87.402	Notamacropus_eugenii
ENSIPUG00000013174	polr1a	99	61.353	ENSOPRG00000008269	POLR1A	100	61.529	Ochotona_princeps
ENSIPUG00000013174	polr1a	100	65.119	ENSODEG00000003542	POLR1A	100	65.641	Octodon_degus
ENSIPUG00000013174	polr1a	100	71.512	ENSONIG00000015895	polr1a	100	71.813	Oreochromis_niloticus
ENSIPUG00000013174	polr1a	100	65.761	ENSOCUG00000010138	POLR1A	100	66.802	Oryctolagus_cuniculus
ENSIPUG00000013174	polr1a	100	71.537	ENSORLG00000008753	polr1a	99	71.537	Oryzias_latipes
ENSIPUG00000013174	polr1a	100	69.365	ENSORLG00020020726	polr1a	99	69.545	Oryzias_latipes_hni
ENSIPUG00000013174	polr1a	95	74.468	ENSORLG00015016071	polr1a	98	74.468	Oryzias_latipes_hsok
ENSIPUG00000013174	polr1a	100	65.665	ENSOGAG00000004031	POLR1A	100	65.914	Otolemur_garnettii
ENSIPUG00000013174	polr1a	100	65.098	ENSOARG00000020601	POLR1A	100	66.223	Ovis_aries
ENSIPUG00000013174	polr1a	100	65.207	ENSPPAG00000042450	POLR1A	100	65.992	Pan_paniscus
ENSIPUG00000013174	polr1a	100	65.587	ENSPPRG00000006702	POLR1A	100	66.300	Panthera_pardus
ENSIPUG00000013174	polr1a	100	65.187	ENSPTIG00000018783	POLR1A	100	65.897	Panthera_tigris_altaica
ENSIPUG00000013174	polr1a	100	65.438	ENSPTRG00000012147	POLR1A	100	66.165	Pan_troglodytes
ENSIPUG00000013174	polr1a	100	65.263	ENSPANG00000025908	POLR1A	100	66.050	Papio_anubis
ENSIPUG00000013174	polr1a	100	72.595	ENSPKIG00000005468	polr1a	99	73.986	Paramormyrops_kingsleyae
ENSIPUG00000013174	polr1a	63	68.489	ENSPSIG00000009321	-	99	69.231	Pelodiscus_sinensis
ENSIPUG00000013174	polr1a	55	73.871	ENSPMGG00000009718	polr1a	95	73.656	Periophthalmus_magnuspinnatus
ENSIPUG00000013174	polr1a	100	65.585	ENSPEMG00000022224	Polr1a	100	66.261	Peromyscus_maniculatus_bairdii
ENSIPUG00000013174	polr1a	95	65.378	ENSPCIG00000004222	POLR1A	99	65.583	Phascolarctos_cinereus
ENSIPUG00000013174	polr1a	100	70.221	ENSPFOG00000005025	polr1a	100	70.245	Poecilia_formosa
ENSIPUG00000013174	polr1a	100	70.116	ENSPLAG00000021389	polr1a	100	70.409	Poecilia_latipinna
ENSIPUG00000013174	polr1a	100	67.755	ENSPMEG00000006463	polr1a	100	68.433	Poecilia_mexicana
ENSIPUG00000013174	polr1a	100	70.140	ENSPREG00000002389	polr1a	100	70.105	Poecilia_reticulata
ENSIPUG00000013174	polr1a	100	64.919	ENSPPYG00000012217	POLR1A	100	65.609	Pongo_abelii
ENSIPUG00000013174	polr1a	91	65.015	ENSPCAG00000011582	POLR1A	91	64.778	Procavia_capensis
ENSIPUG00000013174	polr1a	100	66.205	ENSPCOG00000026987	POLR1A	100	66.763	Propithecus_coquereli
ENSIPUG00000013174	polr1a	95	66.082	ENSPVAG00000012674	POLR1A	95	66.642	Pteropus_vampyrus
ENSIPUG00000013174	polr1a	100	71.512	ENSPNYG00000000026	polr1a	100	71.495	Pundamilia_nyererei
ENSIPUG00000013174	polr1a	100	81.845	ENSPNAG00000019223	polr1a	100	81.845	Pygocentrus_nattereri
ENSIPUG00000013174	polr1a	100	65.950	ENSRNOG00000009545	Polr1a	100	66.338	Rattus_norvegicus
ENSIPUG00000013174	polr1a	100	65.147	ENSRBIG00000028335	POLR1A	100	65.703	Rhinopithecus_bieti
ENSIPUG00000013174	polr1a	100	65.089	ENSRROG00000031473	POLR1A	100	65.645	Rhinopithecus_roxellana
ENSIPUG00000013174	polr1a	99	36.708	YOR341W	RPA190	99	36.708	Saccharomyces_cerevisiae
ENSIPUG00000013174	polr1a	100	65.187	ENSSBOG00000030262	POLR1A	100	65.954	Saimiri_boliviensis_boliviensis
ENSIPUG00000013174	polr1a	100	60.276	ENSSHAG00000014739	POLR1A	100	61.534	Sarcophilus_harrisii
ENSIPUG00000013174	polr1a	100	72.913	ENSSFOG00015019716	polr1a	100	73.003	Scleropages_formosus
ENSIPUG00000013174	polr1a	100	71.186	ENSSMAG00000014342	polr1a	100	71.028	Scophthalmus_maximus
ENSIPUG00000013174	polr1a	100	72.430	ENSSDUG00000014631	polr1a	100	72.488	Seriola_dumerili
ENSIPUG00000013174	polr1a	100	70.809	ENSSLDG00000024095	polr1a	100	70.750	Seriola_lalandi_dorsalis
ENSIPUG00000013174	polr1a	71	92.683	ENSSARG00000003136	-	71	92.683	Sorex_araneus
ENSIPUG00000013174	polr1a	92	73.846	ENSSPUG00000004215	POLR1A	98	73.846	Sphenodon_punctatus
ENSIPUG00000013174	polr1a	64	77.816	ENSSPAG00000016341	polr1a	93	77.535	Stegastes_partitus
ENSIPUG00000013174	polr1a	84	67.573	ENSSSCG00000008226	POLR1A	99	67.503	Sus_scrofa
ENSIPUG00000013174	polr1a	99	66.568	ENSTGUG00000010704	POLR1A	100	67.023	Taeniopygia_guttata
ENSIPUG00000013174	polr1a	100	69.262	ENSTRUG00000002210	polr1a	99	69.596	Takifugu_rubripes
ENSIPUG00000013174	polr1a	100	64.076	ENSTNIG00000010116	polr1a	100	63.961	Tetraodon_nigroviridis
ENSIPUG00000013174	polr1a	73	82.301	ENSTBEG00000008646	POLR1A	74	82.301	Tupaia_belangeri
ENSIPUG00000013174	polr1a	100	64.100	ENSTTRG00000008597	POLR1A	100	64.095	Tursiops_truncatus
ENSIPUG00000013174	polr1a	69	67.144	ENSUAMG00000012158	-	94	68.105	Ursus_americanus
ENSIPUG00000013174	polr1a	100	65.331	ENSUMAG00000006700	POLR1A	100	65.967	Ursus_maritimus
ENSIPUG00000013174	polr1a	100	65.373	ENSVVUG00000001245	POLR1A	100	65.991	Vulpes_vulpes
ENSIPUG00000013174	polr1a	100	63.537	ENSXETG00000001952	polr1a	99	65.095	Xenopus_tropicalis
ENSIPUG00000013174	polr1a	100	69.901	ENSXMAG00000004032	polr1a	100	70.210	Xiphophorus_maculatus