EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000013192 (Gene tree)
Gene ID: 108258933
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 29155 bases
Position: chr26:8228140-8257294
Accession: 108258933
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019519	RRM_1	PF00076.22	1.5e-34	1	2
ENSIPUP00000019519	RRM_1	PF00076.22	1.5e-34	2	2
ENSIPUP00000019484	RRM_1	PF00076.22	2e-34	1	2
ENSIPUP00000019484	RRM_1	PF00076.22	2e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020328	-	1759	XM_017457963	ENSIPUP00000019484	523 (aa)	XP_017313452	W5UEK8
ENSIPUT00000020363	-	1482	-	ENSIPUP00000019519	493 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000013192's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013192's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000013192	pspc1	87	55.556	ENSIPUG00000013076	SFPQ	71	63.568
ENSIPUG00000013192	pspc1	74	62.148	ENSIPUG00000018271	nono	92	59.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013192	pspc1	88	73.673	ENSG00000121390	PSPC1	98	73.643	Homo_sapiens
ENSIPUG00000013192	pspc1	100	69.653	ENSAPOG00000015946	pspc1	100	70.654	Acanthochromis_polyacanthus
ENSIPUG00000013192	pspc1	100	67.917	ENSAMEG00000017420	PSPC1	99	68.105	Ailuropoda_melanoleuca
ENSIPUG00000013192	pspc1	100	63.534	ENSACIG00000018695	pspc1	100	61.842	Amphilophus_citrinellus
ENSIPUG00000013192	pspc1	100	68.934	ENSAOCG00000005279	pspc1	100	69.646	Amphiprion_ocellaris
ENSIPUG00000013192	pspc1	100	69.501	ENSAPEG00000015927	pspc1	100	70.225	Amphiprion_percula
ENSIPUG00000013192	pspc1	100	61.194	ENSATEG00000004878	pspc1	100	60.261	Anabas_testudineus
ENSIPUG00000013192	pspc1	77	70.238	ENSAPLG00000006246	PSPC1	100	71.014	Anas_platyrhynchos
ENSIPUG00000013192	pspc1	66	70.655	ENSAPLG00000003643	SFPQ	79	60.190	Anas_platyrhynchos
ENSIPUG00000013192	pspc1	66	61.732	ENSACAG00000013307	-	54	63.533	Anolis_carolinensis
ENSIPUG00000013192	pspc1	99	66.055	ENSACAG00000002093	PSPC1	99	66.543	Anolis_carolinensis
ENSIPUG00000013192	pspc1	100	67.355	ENSANAG00000000059	PSPC1	98	71.503	Aotus_nancymaae
ENSIPUG00000013192	pspc1	100	63.060	ENSACLG00000027220	pspc1	100	61.224	Astatotilapia_calliptera
ENSIPUG00000013192	pspc1	100	88.679	ENSAMXG00000036881	pspc1	100	88.679	Astyanax_mexicanus
ENSIPUG00000013192	pspc1	88	73.673	ENSBTAG00000003934	PSPC1	89	73.885	Bos_taurus
ENSIPUG00000013192	pspc1	100	67.355	ENSCJAG00000004554	PSPC1	99	67.730	Callithrix_jacchus
ENSIPUG00000013192	pspc1	88	73.673	ENSCAFG00020002009	PSPC1	98	73.834	Canis_lupus_dingo
ENSIPUG00000013192	pspc1	88	73.673	ENSCHIG00000016708	PSPC1	89	73.885	Capra_hircus
ENSIPUG00000013192	pspc1	80	66.744	ENSTSYG00000032882	PSPC1	88	65.937	Carlito_syrichta
ENSIPUG00000013192	pspc1	88	73.885	ENSCPOG00000000395	PSPC1	98	73.902	Cavia_porcellus
ENSIPUG00000013192	pspc1	100	67.355	ENSCCAG00000033498	PSPC1	99	67.542	Cebus_capucinus
ENSIPUG00000013192	pspc1	88	73.673	ENSCATG00000036434	PSPC1	94	80.814	Cercocebus_atys
ENSIPUG00000013192	pspc1	76	72.861	ENSCLAG00000005241	PSPC1	89	72.861	Chinchilla_lanigera
ENSIPUG00000013192	pspc1	88	70.426	ENSCHOG00000008913	PSPC1	99	63.089	Choloepus_hoffmanni
ENSIPUG00000013192	pspc1	99	66.419	ENSCPBG00000020859	PSPC1	99	66.979	Chrysemys_picta_bellii
ENSIPUG00000013192	pspc1	55	61.168	ENSCSAVG00000003533	-	57	58.306	Ciona_savignyi
ENSIPUG00000013192	pspc1	77	62.169	ENSCANG00000018948	PSPC1	87	84.351	Colobus_angolensis_palliatus
ENSIPUG00000013192	pspc1	91	73.140	ENSCGRG00001018368	Pspc1	99	68.148	Cricetulus_griseus_chok1gshd
ENSIPUG00000013192	pspc1	91	73.140	ENSCGRG00000011724	Pspc1	99	68.148	Cricetulus_griseus_crigri
ENSIPUG00000013192	pspc1	100	63.977	ENSCVAG00000007679	-	100	63.277	Cyprinodon_variegatus
ENSIPUG00000013192	pspc1	100	77.863	ENSDARG00000006621	pspc1	100	81.436	Danio_rerio
ENSIPUG00000013192	pspc1	88	73.885	ENSDNOG00000011078	PSPC1	91	72.541	Dasypus_novemcinctus
ENSIPUG00000013192	pspc1	100	64.804	ENSDORG00000016050	Pspc1	99	64.804	Dipodomys_ordii
ENSIPUG00000013192	pspc1	55	86.139	ENSETEG00000000502	-	60	86.139	Echinops_telfairi
ENSIPUG00000013192	pspc1	88	59.329	ENSEBUG00000003964	-	74	63.171	Eptatretus_burgeri
ENSIPUG00000013192	pspc1	62	44.857	ENSEBUG00000010133	pspc1	77	48.805	Eptatretus_burgeri
ENSIPUG00000013192	pspc1	88	73.885	ENSEASG00005000119	PSPC1	98	73.834	Equus_asinus_asinus
ENSIPUG00000013192	pspc1	88	73.885	ENSECAG00000017286	PSPC1	98	73.834	Equus_caballus
ENSIPUG00000013192	pspc1	53	72.901	ENSEEUG00000011288	-	61	65.217	Erinaceus_europaeus
ENSIPUG00000013192	pspc1	100	78.131	ENSELUG00000003746	pspc1	100	78.131	Esox_lucius
ENSIPUG00000013192	pspc1	88	73.885	ENSFCAG00000027841	PSPC1	98	73.834	Felis_catus
ENSIPUG00000013192	pspc1	99	66.421	ENSFALG00000008750	PSPC1	99	67.784	Ficedula_albicollis
ENSIPUG00000013192	pspc1	92	70.876	ENSFDAG00000002617	PSPC1	99	68.293	Fukomys_damarensis
ENSIPUG00000013192	pspc1	100	64.925	ENSGMOG00000015074	pspc1	100	65.741	Gadus_morhua
ENSIPUG00000013192	pspc1	99	67.347	ENSGALG00000017142	PSPC1	99	68.224	Gallus_gallus
ENSIPUG00000013192	pspc1	74	69.873	ENSGAFG00000006327	pspc1	81	69.873	Gambusia_affinis
ENSIPUG00000013192	pspc1	100	62.949	ENSGACG00000014901	pspc1	95	76.627	Gasterosteus_aculeatus
ENSIPUG00000013192	pspc1	99	66.419	ENSGAGG00000019164	PSPC1	99	66.979	Gopherus_agassizii
ENSIPUG00000013192	pspc1	66	69.516	ENSGAGG00000017325	-	64	60.095	Gopherus_agassizii
ENSIPUG00000013192	pspc1	88	73.673	ENSGGOG00000003414	PSPC1	98	73.643	Gorilla_gorilla
ENSIPUG00000013192	pspc1	100	69.403	ENSHBUG00000001139	pspc1	100	69.868	Haplochromis_burtoni
ENSIPUG00000013192	pspc1	92	70.791	ENSHGLG00000018811	PSPC1	99	67.528	Heterocephalus_glaber_female
ENSIPUG00000013192	pspc1	55	85.764	ENSHGLG00100007962	PSPC1	87	86.667	Heterocephalus_glaber_male
ENSIPUG00000013192	pspc1	77	71.182	ENSHCOG00000013251	pspc1	99	63.778	Hippocampus_comes
ENSIPUG00000013192	pspc1	93	71.313	ENSSTOG00000026833	PSPC1	98	73.333	Ictidomys_tridecemlineatus
ENSIPUG00000013192	pspc1	80	76.923	ENSJJAG00000018334	Pspc1	91	72.521	Jaculus_jaculus
ENSIPUG00000013192	pspc1	89	63.409	ENSKMAG00000013525	-	100	58.532	Kryptolebias_marmoratus
ENSIPUG00000013192	pspc1	98	66.111	ENSLBEG00000004474	pspc1	99	62.842	Labrus_bergylta
ENSIPUG00000013192	pspc1	100	65.818	ENSLACG00000010762	PSPC1	100	66.360	Latimeria_chalumnae
ENSIPUG00000013192	pspc1	100	72.608	ENSLOCG00000010832	pspc1	99	72.608	Lepisosteus_oculatus
ENSIPUG00000013192	pspc1	90	72.634	ENSLAFG00000010968	PSPC1	91	73.045	Loxodonta_africana
ENSIPUG00000013192	pspc1	88	73.673	ENSMFAG00000032728	PSPC1	96	80.870	Macaca_fascicularis
ENSIPUG00000013192	pspc1	88	73.673	ENSMMUG00000020262	PSPC1	92	80.814	Macaca_mulatta
ENSIPUG00000013192	pspc1	88	73.673	ENSMNEG00000027401	PSPC1	98	70.753	Macaca_nemestrina
ENSIPUG00000013192	pspc1	76	72.616	ENSMLEG00000039043	PSPC1	94	72.861	Mandrillus_leucophaeus
ENSIPUG00000013192	pspc1	100	66.728	ENSMAMG00000004333	pspc1	100	66.176	Mastacembelus_armatus
ENSIPUG00000013192	pspc1	100	63.060	ENSMZEG00005005726	pspc1	100	61.224	Maylandia_zebra
ENSIPUG00000013192	pspc1	77	70.142	ENSMGAG00000015134	PSPC1	100	70.913	Meleagris_gallopavo
ENSIPUG00000013192	pspc1	86	66.098	ENSMAUG00000021067	Pspc1	98	64.119	Mesocricetus_auratus
ENSIPUG00000013192	pspc1	91	74.380	ENSMICG00000013970	PSPC1	98	73.316	Microcebus_murinus
ENSIPUG00000013192	pspc1	91	72.727	ENSMOCG00000006060	Pspc1	91	73.140	Microtus_ochrogaster
ENSIPUG00000013192	pspc1	74	52.185	ENSMMOG00000004352	pspc1	65	52.486	Mola_mola
ENSIPUG00000013192	pspc1	82	75.286	ENSMODG00000008029	PSPC1	70	75.286	Monodelphis_domestica
ENSIPUG00000013192	pspc1	100	68.302	ENSMALG00000008914	pspc1	100	67.736	Monopterus_albus
ENSIPUG00000013192	pspc1	91	72.371	MGP_CAROLIEiJ_G0019341	Pspc1	88	77.295	Mus_caroli
ENSIPUG00000013192	pspc1	91	72.577	ENSMUSG00000021938	Pspc1	88	77.295	Mus_musculus
ENSIPUG00000013192	pspc1	91	72.577	MGP_PahariEiJ_G0030359	Pspc1	88	77.295	Mus_pahari
ENSIPUG00000013192	pspc1	91	72.577	MGP_SPRETEiJ_G0020232	Pspc1	98	70.842	Mus_spretus
ENSIPUG00000013192	pspc1	88	73.673	ENSMPUG00000013347	PSPC1	99	67.850	Mustela_putorius_furo
ENSIPUG00000013192	pspc1	88	73.207	ENSMLUG00000017663	PSPC1	99	67.351	Myotis_lucifugus
ENSIPUG00000013192	pspc1	91	73.347	ENSNGAG00000011271	Pspc1	99	67.222	Nannospalax_galili
ENSIPUG00000013192	pspc1	74	69.289	ENSNBRG00000014059	pspc1	92	68.193	Neolamprologus_brichardi
ENSIPUG00000013192	pspc1	88	73.673	ENSNLEG00000001294	PSPC1	92	72.098	Nomascus_leucogenys
ENSIPUG00000013192	pspc1	75	80.488	ENSMEUG00000000476	PSPC1	72	84.021	Notamacropus_eugenii
ENSIPUG00000013192	pspc1	88	64.756	ENSODEG00000007817	-	99	57.847	Octodon_degus
ENSIPUG00000013192	pspc1	88	66.314	ENSODEG00000019012	-	99	62.243	Octodon_degus
ENSIPUG00000013192	pspc1	100	70.205	ENSONIG00000012010	pspc1	99	70.621	Oreochromis_niloticus
ENSIPUG00000013192	pspc1	83	57.271	ENSOANG00000011381	-	96	54.175	Ornithorhynchus_anatinus
ENSIPUG00000013192	pspc1	76	71.566	ENSOANG00000009017	-	100	72.616	Ornithorhynchus_anatinus
ENSIPUG00000013192	pspc1	88	73.673	ENSOCUG00000006153	PSPC1	99	67.598	Oryctolagus_cuniculus
ENSIPUG00000013192	pspc1	100	66.854	ENSORLG00000004232	-	100	65.918	Oryzias_latipes
ENSIPUG00000013192	pspc1	100	67.228	ENSORLG00020000578	PSPC1	100	66.292	Oryzias_latipes_hni
ENSIPUG00000013192	pspc1	100	66.917	ENSORLG00015017480	pspc1	100	65.789	Oryzias_latipes_hsok
ENSIPUG00000013192	pspc1	91	72.371	ENSOGAG00000012643	PSPC1	99	67.598	Otolemur_garnettii
ENSIPUG00000013192	pspc1	87	73.348	ENSOARG00000014163	PSPC1	95	71.642	Ovis_aries
ENSIPUG00000013192	pspc1	88	67.728	ENSPPAG00000009836	PSPC1	95	80.233	Pan_paniscus
ENSIPUG00000013192	pspc1	88	73.885	ENSPPRG00000008833	PSPC1	99	67.917	Panthera_pardus
ENSIPUG00000013192	pspc1	76	72.372	ENSPTIG00000016917	PSPC1	84	72.861	Panthera_tigris_altaica
ENSIPUG00000013192	pspc1	79	77.488	ENSPTRG00000005677	PSPC1	98	73.643	Pan_troglodytes
ENSIPUG00000013192	pspc1	88	73.673	ENSPANG00000001992	PSPC1	94	80.870	Papio_anubis
ENSIPUG00000013192	pspc1	100	75.236	ENSPKIG00000003578	pspc1	100	74.906	Paramormyrops_kingsleyae
ENSIPUG00000013192	pspc1	99	65.799	ENSPSIG00000005168	PSPC1	99	66.541	Pelodiscus_sinensis
ENSIPUG00000013192	pspc1	71	66.022	ENSPMGG00000015135	pspc1	98	68.258	Periophthalmus_magnuspinnatus
ENSIPUG00000013192	pspc1	91	72.727	ENSPEMG00000015214	Pspc1	99	67.963	Peromyscus_maniculatus_bairdii
ENSIPUG00000013192	pspc1	57	42.953	ENSPMAG00000004618	pspc1	90	44.595	Petromyzon_marinus
ENSIPUG00000013192	pspc1	90	72.199	ENSPCIG00000017680	PSPC1	90	72.614	Phascolarctos_cinereus
ENSIPUG00000013192	pspc1	96	67.698	ENSPFOG00000003362	pspc1	98	67.118	Poecilia_formosa
ENSIPUG00000013192	pspc1	100	66.045	ENSPLAG00000011540	pspc1	100	65.485	Poecilia_latipinna
ENSIPUG00000013192	pspc1	70	63.686	ENSPLAG00000004407	-	52	64.525	Poecilia_latipinna
ENSIPUG00000013192	pspc1	100	66.045	ENSPMEG00000008322	pspc1	100	65.485	Poecilia_mexicana
ENSIPUG00000013192	pspc1	73	61.757	ENSPMEG00000001025	-	52	64.525	Poecilia_mexicana
ENSIPUG00000013192	pspc1	100	65.672	ENSPREG00000007786	pspc1	100	65.112	Poecilia_reticulata
ENSIPUG00000013192	pspc1	88	73.461	ENSPPYG00000005186	PSPC1	97	70.842	Pongo_abelii
ENSIPUG00000013192	pspc1	91	70.928	ENSPCOG00000014364	PSPC1	90	69.278	Propithecus_coquereli
ENSIPUG00000013192	pspc1	88	73.673	ENSPVAG00000005036	PSPC1	99	66.792	Pteropus_vampyrus
ENSIPUG00000013192	pspc1	100	63.060	ENSPNYG00000008893	pspc1	100	61.224	Pundamilia_nyererei
ENSIPUG00000013192	pspc1	100	88.762	ENSPNAG00000016511	pspc1	100	89.504	Pygocentrus_nattereri
ENSIPUG00000013192	pspc1	91	72.727	ENSRNOG00000020782	Pspc1	98	71.121	Rattus_norvegicus
ENSIPUG00000013192	pspc1	92	72.301	ENSRBIG00000036057	PSPC1	96	81.105	Rhinopithecus_bieti
ENSIPUG00000013192	pspc1	92	72.098	ENSRROG00000036334	PSPC1	98	73.834	Rhinopithecus_roxellana
ENSIPUG00000013192	pspc1	79	60.993	ENSSBOG00000028172	PSPC1	90	80.435	Saimiri_boliviensis_boliviensis
ENSIPUG00000013192	pspc1	90	67.769	ENSSHAG00000004696	PSPC1	90	64.990	Sarcophilus_harrisii
ENSIPUG00000013192	pspc1	88	78.678	ENSSFOG00015001395	pspc1	99	79.957	Scleropages_formosus
ENSIPUG00000013192	pspc1	100	68.207	ENSSMAG00000001761	pspc1	100	67.837	Scophthalmus_maximus
ENSIPUG00000013192	pspc1	100	66.908	ENSSDUG00000010651	pspc1	100	67.450	Seriola_dumerili
ENSIPUG00000013192	pspc1	100	63.019	ENSSLDG00000004284	pspc1	100	62.430	Seriola_lalandi_dorsalis
ENSIPUG00000013192	pspc1	81	70.901	ENSSARG00000000888	PSPC1	99	63.501	Sorex_araneus
ENSIPUG00000013192	pspc1	99	56.747	ENSSPUG00000008550	PSPC1	99	57.301	Sphenodon_punctatus
ENSIPUG00000013192	pspc1	87	52.542	ENSSPUG00000001136	-	52	58.689	Sphenodon_punctatus
ENSIPUG00000013192	pspc1	100	69.891	ENSSPAG00000001921	pspc1	100	68.877	Stegastes_partitus
ENSIPUG00000013192	pspc1	80	76.923	ENSSSCG00000009569	PSPC1	99	73.265	Sus_scrofa
ENSIPUG00000013192	pspc1	88	72.176	ENSTGUG00000011295	PSPC1	99	72.881	Taeniopygia_guttata
ENSIPUG00000013192	pspc1	100	62.524	ENSTRUG00000011335	pspc1	100	59.191	Takifugu_rubripes
ENSIPUG00000013192	pspc1	100	62.147	ENSTNIG00000010358	pspc1	100	60.444	Tetraodon_nigroviridis
ENSIPUG00000013192	pspc1	88	62.393	ENSTBEG00000002361	PSPC1	67	75.439	Tupaia_belangeri
ENSIPUG00000013192	pspc1	100	67.603	ENSTTRG00000003343	PSPC1	99	67.790	Tursiops_truncatus
ENSIPUG00000013192	pspc1	71	71.955	ENSUAMG00000012309	PSPC1	99	75.216	Ursus_americanus
ENSIPUG00000013192	pspc1	92	71.690	ENSUMAG00000013993	PSPC1	91	83.642	Ursus_maritimus
ENSIPUG00000013192	pspc1	76	72.127	ENSVPAG00000010029	PSPC1	100	72.372	Vicugna_pacos
ENSIPUG00000013192	pspc1	88	73.673	ENSVVUG00000006414	PSPC1	99	73.834	Vulpes_vulpes
ENSIPUG00000013192	pspc1	74	69.873	ENSXCOG00000017438	pspc1	93	69.873	Xiphophorus_couchianus
ENSIPUG00000013192	pspc1	74	70.127	ENSXMAG00000007929	pspc1	93	70.127	Xiphophorus_maculatus