EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013279 (Gene tree)
Gene ID: 108279532
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 57672 bases
Position: chr19:622644-680315
Accession: 108279532
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000019683	TUDOR	PF00567.24	7.1e-26	1	1
ENSIPUP00000019637	TUDOR	PF00567.24	2.1e-25	1	1
ENSIPUP00000019637	SNase	PF00565.17	1.4e-66	1	4
ENSIPUP00000019637	SNase	PF00565.17	1.4e-66	2	4
ENSIPUP00000019637	SNase	PF00565.17	1.4e-66	3	4
ENSIPUP00000019637	SNase	PF00565.17	1.4e-66	4	4
ENSIPUP00000019683	SNase	PF00565.17	1.4e-61	1	4
ENSIPUP00000019683	SNase	PF00565.17	1.4e-61	2	4
ENSIPUP00000019683	SNase	PF00565.17	1.4e-61	3	4
ENSIPUP00000019683	SNase	PF00565.17	1.4e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020534	-	2748	-	ENSIPUP00000019683	915 (aa)	-	-
ENSIPUT00000020488	-	4117	XM_017493842	ENSIPUP00000019637	912 (aa)	XP_017349331	A0A2D0T3E1

Gene Model

Click here to download ENSIPUG00000013279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013279	snd1	98	83.408	ENSG00000197157	SND1	100	82.385	Homo_sapiens
ENSIPUG00000013279	snd1	99	89.243	ENSAPOG00000017599	snd1	99	89.243	Acanthochromis_polyacanthus
ENSIPUG00000013279	snd1	100	82.751	ENSAMEG00000004664	SND1	94	82.751	Ailuropoda_melanoleuca
ENSIPUG00000013279	snd1	99	85.950	ENSACIG00000003551	snd1	99	85.950	Amphilophus_citrinellus
ENSIPUG00000013279	snd1	99	89.133	ENSAOCG00000014166	snd1	99	89.133	Amphiprion_ocellaris
ENSIPUG00000013279	snd1	99	89.133	ENSAPEG00000007067	snd1	99	89.133	Amphiprion_percula
ENSIPUG00000013279	snd1	98	88.702	ENSATEG00000018475	snd1	89	88.702	Anabas_testudineus
ENSIPUG00000013279	snd1	98	83.742	ENSANAG00000034463	SND1	99	83.784	Aotus_nancymaae
ENSIPUG00000013279	snd1	99	88.584	ENSACLG00000022897	snd1	99	88.584	Astatotilapia_calliptera
ENSIPUG00000013279	snd1	100	93.092	ENSAMXG00000016318	snd1	100	93.092	Astyanax_mexicanus
ENSIPUG00000013279	snd1	98	83.648	ENSBTAG00000010692	SND1	100	82.713	Bos_taurus
ENSIPUG00000013279	snd1	98	47.225	WBGene00006626	tsn-1	98	47.552	Caenorhabditis_elegans
ENSIPUG00000013279	snd1	98	83.519	ENSCJAG00000017668	SND1	99	83.559	Callithrix_jacchus
ENSIPUG00000013279	snd1	100	82.713	ENSCAFG00000001700	SND1	100	82.713	Canis_familiaris
ENSIPUG00000013279	snd1	100	82.713	ENSCAFG00020021639	SND1	100	82.713	Canis_lupus_dingo
ENSIPUG00000013279	snd1	98	83.630	ENSCHIG00000023390	SND1	100	82.604	Capra_hircus
ENSIPUG00000013279	snd1	71	87.238	ENSTSYG00000004979	SND1	96	87.238	Carlito_syrichta
ENSIPUG00000013279	snd1	100	72.380	ENSCAPG00000010677	SND1	100	72.380	Cavia_aperea
ENSIPUG00000013279	snd1	98	83.630	ENSCPOG00000006251	SND1	100	82.604	Cavia_porcellus
ENSIPUG00000013279	snd1	98	83.648	ENSCCAG00000036847	SND1	100	82.713	Cebus_capucinus
ENSIPUG00000013279	snd1	98	83.742	ENSCATG00000035214	SND1	99	83.784	Cercocebus_atys
ENSIPUG00000013279	snd1	98	83.630	ENSCLAG00000011796	SND1	98	85.284	Chinchilla_lanigera
ENSIPUG00000013279	snd1	98	83.742	ENSCSAG00000010182	SND1	100	82.713	Chlorocebus_sabaeus
ENSIPUG00000013279	snd1	77	68.317	ENSCHOG00000002218	SND1	86	68.317	Choloepus_hoffmanni
ENSIPUG00000013279	snd1	99	82.948	ENSCPBG00000018094	SND1	99	82.948	Chrysemys_picta_bellii
ENSIPUG00000013279	snd1	98	55.788	ENSCING00000000524	-	99	55.124	Ciona_intestinalis
ENSIPUG00000013279	snd1	99	56.831	ENSCSAVG00000008807	-	99	56.831	Ciona_savignyi
ENSIPUG00000013279	snd1	98	83.742	ENSCANG00000035119	SND1	100	82.713	Colobus_angolensis_palliatus
ENSIPUG00000013279	snd1	98	83.315	ENSCGRG00001022514	Snd1	98	85.117	Cricetulus_griseus_chok1gshd
ENSIPUG00000013279	snd1	97	83.446	ENSCGRG00000012277	Snd1	99	83.446	Cricetulus_griseus_crigri
ENSIPUG00000013279	snd1	99	88.364	ENSCSEG00000008661	snd1	99	88.364	Cynoglossus_semilaevis
ENSIPUG00000013279	snd1	99	89.133	ENSCVAG00000010316	snd1	100	88.647	Cyprinodon_variegatus
ENSIPUG00000013279	snd1	100	89.387	ENSDARG00000006766	snd1	98	92.870	Danio_rerio
ENSIPUG00000013279	snd1	97	81.706	ENSDNOG00000006795	SND1	100	81.706	Dasypus_novemcinctus
ENSIPUG00000013279	snd1	98	83.519	ENSDORG00000000336	Snd1	100	82.495	Dipodomys_ordii
ENSIPUG00000013279	snd1	97	50.873	FBgn0035121	Tudor-SN	99	50.427	Drosophila_melanogaster
ENSIPUG00000013279	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSIPUG00000013279	snd1	60	67.560	ENSEBUG00000014201	-	94	69.756	Eptatretus_burgeri
ENSIPUG00000013279	snd1	98	82.694	ENSEASG00005008513	SND1	100	81.701	Equus_asinus_asinus
ENSIPUG00000013279	snd1	98	83.853	ENSECAG00000011451	SND1	100	82.823	Equus_caballus
ENSIPUG00000013279	snd1	100	74.289	ENSEEUG00000014737	SND1	100	74.289	Erinaceus_europaeus
ENSIPUG00000013279	snd1	99	87.076	ENSELUG00000001805	snd1	97	87.076	Esox_lucius
ENSIPUG00000013279	snd1	100	83.042	ENSFCAG00000008289	SND1	100	83.042	Felis_catus
ENSIPUG00000013279	snd1	98	83.630	ENSFDAG00000015881	SND1	100	82.604	Fukomys_damarensis
ENSIPUG00000013279	snd1	99	86.896	ENSFHEG00000004093	snd1	99	88.571	Fundulus_heteroclitus
ENSIPUG00000013279	snd1	74	79.096	ENSGMOG00000018932	snd1	65	79.096	Gadus_morhua
ENSIPUG00000013279	snd1	99	88.694	ENSGAFG00000008421	snd1	99	89.651	Gambusia_affinis
ENSIPUG00000013279	snd1	99	56.833	ENSGACG00000019793	snd1	99	56.786	Gasterosteus_aculeatus
ENSIPUG00000013279	snd1	98	83.630	ENSGGOG00000009614	SND1	99	83.671	Gorilla_gorilla
ENSIPUG00000013279	snd1	99	88.584	ENSHBUG00000019135	snd1	99	88.584	Haplochromis_burtoni
ENSIPUG00000013279	snd1	98	83.204	ENSHGLG00000003618	SND1	98	84.783	Heterocephalus_glaber_female
ENSIPUG00000013279	snd1	98	83.204	ENSHGLG00100012449	SND1	99	83.204	Heterocephalus_glaber_male
ENSIPUG00000013279	snd1	99	87.706	ENSHCOG00000005266	snd1	99	87.706	Hippocampus_comes
ENSIPUG00000013279	snd1	98	83.630	ENSSTOG00000002140	SND1	100	82.604	Ictidomys_tridecemlineatus
ENSIPUG00000013279	snd1	98	83.630	ENSJJAG00000009561	Snd1	100	82.604	Jaculus_jaculus
ENSIPUG00000013279	snd1	99	89.023	ENSKMAG00000016997	snd1	99	89.023	Kryptolebias_marmoratus
ENSIPUG00000013279	snd1	99	90.000	ENSLBEG00000013563	snd1	99	87.925	Labrus_bergylta
ENSIPUG00000013279	snd1	98	88.914	ENSLOCG00000015537	snd1	100	87.826	Lepisosteus_oculatus
ENSIPUG00000013279	snd1	100	82.932	ENSLAFG00000009696	SND1	100	82.932	Loxodonta_africana
ENSIPUG00000013279	snd1	98	83.742	ENSMFAG00000038114	SND1	99	83.784	Macaca_fascicularis
ENSIPUG00000013279	snd1	98	83.742	ENSMMUG00000015432	SND1	100	82.713	Macaca_mulatta
ENSIPUG00000013279	snd1	98	83.742	ENSMNEG00000039808	SND1	97	87.346	Macaca_nemestrina
ENSIPUG00000013279	snd1	98	83.630	ENSMLEG00000029040	SND1	97	87.346	Mandrillus_leucophaeus
ENSIPUG00000013279	snd1	99	89.133	ENSMAMG00000011739	snd1	99	89.133	Mastacembelus_armatus
ENSIPUG00000013279	snd1	99	88.584	ENSMZEG00005005681	snd1	99	88.584	Maylandia_zebra
ENSIPUG00000013279	snd1	98	83.630	ENSMICG00000000097	SND1	100	82.604	Microcebus_murinus
ENSIPUG00000013279	snd1	98	83.760	ENSMOCG00000005040	Snd1	100	82.823	Microtus_ochrogaster
ENSIPUG00000013279	snd1	99	89.133	ENSMMOG00000001795	snd1	99	89.133	Mola_mola
ENSIPUG00000013279	snd1	98	83.073	ENSMODG00000015182	SND1	100	82.057	Monodelphis_domestica
ENSIPUG00000013279	snd1	99	88.913	ENSMALG00000012071	snd1	99	88.913	Monopterus_albus
ENSIPUG00000013279	snd1	98	83.408	MGP_CAROLIEiJ_G0028159	Snd1	99	84.925	Mus_caroli
ENSIPUG00000013279	snd1	98	83.185	ENSMUSG00000001424	Snd1	99	83.279	Mus_musculus
ENSIPUG00000013279	snd1	98	83.408	MGP_PahariEiJ_G0021917	Snd1	100	84.925	Mus_pahari
ENSIPUG00000013279	snd1	98	83.408	MGP_SPRETEiJ_G0029159	Snd1	99	83.607	Mus_spretus
ENSIPUG00000013279	snd1	100	82.604	ENSMPUG00000006545	SND1	100	82.604	Mustela_putorius_furo
ENSIPUG00000013279	snd1	97	82.759	ENSMLUG00000017130	SND1	99	82.759	Myotis_lucifugus
ENSIPUG00000013279	snd1	98	83.853	ENSNGAG00000011186	Snd1	100	82.823	Nannospalax_galili
ENSIPUG00000013279	snd1	99	88.584	ENSNBRG00000006681	snd1	99	88.584	Neolamprologus_brichardi
ENSIPUG00000013279	snd1	100	82.495	ENSNLEG00000012263	SND1	99	85.427	Nomascus_leucogenys
ENSIPUG00000013279	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSIPUG00000013279	snd1	98	83.853	ENSODEG00000011502	SND1	100	82.913	Octodon_degus
ENSIPUG00000013279	snd1	99	89.023	ENSONIG00000011481	snd1	97	89.023	Oreochromis_niloticus
ENSIPUG00000013279	snd1	98	82.848	ENSOANG00000000817	SND1	98	82.314	Ornithorhynchus_anatinus
ENSIPUG00000013279	snd1	100	82.604	ENSOCUG00000001620	SND1	100	82.604	Oryctolagus_cuniculus
ENSIPUG00000013279	snd1	98	88.616	ENSORLG00000015201	snd1	99	87.816	Oryzias_latipes
ENSIPUG00000013279	snd1	98	88.839	ENSORLG00020013991	snd1	99	88.035	Oryzias_latipes_hni
ENSIPUG00000013279	snd1	98	88.839	ENSORLG00015012436	snd1	99	88.035	Oryzias_latipes_hsok
ENSIPUG00000013279	snd1	99	88.804	ENSOMEG00000006406	snd1	99	88.804	Oryzias_melastigma
ENSIPUG00000013279	snd1	98	83.222	ENSOGAG00000013356	SND1	94	82.205	Otolemur_garnettii
ENSIPUG00000013279	snd1	97	81.327	ENSOARG00000002149	SND1	100	81.327	Ovis_aries
ENSIPUG00000013279	snd1	99	82.743	ENSPPAG00000042947	SND1	100	82.495	Pan_paniscus
ENSIPUG00000013279	snd1	100	83.042	ENSPPRG00000004494	SND1	100	83.042	Panthera_pardus
ENSIPUG00000013279	snd1	100	82.932	ENSPTIG00000014214	SND1	100	82.932	Panthera_tigris_altaica
ENSIPUG00000013279	snd1	99	82.743	ENSPTRG00000023911	SND1	99	83.559	Pan_troglodytes
ENSIPUG00000013279	snd1	97	83.784	ENSPANG00000011997	SND1	99	83.784	Papio_anubis
ENSIPUG00000013279	snd1	98	87.791	ENSPKIG00000023494	snd1	100	86.834	Paramormyrops_kingsleyae
ENSIPUG00000013279	snd1	92	88.663	ENSPMGG00000003629	snd1	100	88.663	Periophthalmus_magnuspinnatus
ENSIPUG00000013279	snd1	98	83.537	ENSPEMG00000010240	Snd1	100	82.604	Peromyscus_maniculatus_bairdii
ENSIPUG00000013279	snd1	97	73.536	ENSPMAG00000007915	-	99	73.536	Petromyzon_marinus
ENSIPUG00000013279	snd1	98	83.630	ENSPCIG00000011561	SND1	100	82.604	Phascolarctos_cinereus
ENSIPUG00000013279	snd1	99	88.255	ENSPFOG00000001557	snd1	99	88.255	Poecilia_formosa
ENSIPUG00000013279	snd1	99	88.364	ENSPLAG00000018459	snd1	97	88.364	Poecilia_latipinna
ENSIPUG00000013279	snd1	99	88.474	ENSPMEG00000006803	snd1	99	88.474	Poecilia_mexicana
ENSIPUG00000013279	snd1	99	88.255	ENSPREG00000002189	snd1	99	88.255	Poecilia_reticulata
ENSIPUG00000013279	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSIPUG00000013279	snd1	100	72.757	ENSPCAG00000011305	SND1	100	72.757	Procavia_capensis
ENSIPUG00000013279	snd1	98	83.315	ENSPCOG00000026791	SND1	100	83.465	Propithecus_coquereli
ENSIPUG00000013279	snd1	98	81.869	ENSPVAG00000013945	SND1	100	80.963	Pteropus_vampyrus
ENSIPUG00000013279	snd1	99	88.584	ENSPNYG00000000932	snd1	99	88.584	Pundamilia_nyererei
ENSIPUG00000013279	snd1	100	94.189	ENSPNAG00000001206	snd1	100	94.189	Pygocentrus_nattereri
ENSIPUG00000013279	snd1	98	83.426	ENSRNOG00000031173	Snd1	100	82.677	Rattus_norvegicus
ENSIPUG00000013279	snd1	71	87.547	ENSRBIG00000027782	-	93	87.547	Rhinopithecus_bieti
ENSIPUG00000013279	snd1	98	83.742	ENSRROG00000033020	SND1	100	82.713	Rhinopithecus_roxellana
ENSIPUG00000013279	snd1	98	83.742	ENSSBOG00000032461	SND1	99	83.784	Saimiri_boliviensis_boliviensis
ENSIPUG00000013279	snd1	98	80.246	ENSSHAG00000015359	SND1	100	80.246	Sarcophilus_harrisii
ENSIPUG00000013279	snd1	100	88.466	ENSSFOG00015001103	snd1	100	88.466	Scleropages_formosus
ENSIPUG00000013279	snd1	99	88.145	ENSSMAG00000001932	snd1	94	88.145	Scophthalmus_maximus
ENSIPUG00000013279	snd1	99	89.133	ENSSDUG00000002699	snd1	93	89.133	Seriola_dumerili
ENSIPUG00000013279	snd1	99	81.559	ENSSLDG00000001950	snd1	99	81.559	Seriola_lalandi_dorsalis
ENSIPUG00000013279	snd1	86	79.148	ENSSARG00000004877	SND1	92	79.148	Sorex_araneus
ENSIPUG00000013279	snd1	72	79.965	ENSSPUG00000017586	SND1	96	79.965	Sphenodon_punctatus
ENSIPUG00000013279	snd1	74	89.679	ENSSPAG00000021398	snd1	98	89.679	Stegastes_partitus
ENSIPUG00000013279	snd1	98	83.742	ENSSSCG00000016590	SND1	100	82.713	Sus_scrofa
ENSIPUG00000013279	snd1	99	88.035	ENSTRUG00000014067	snd1	99	88.035	Takifugu_rubripes
ENSIPUG00000013279	snd1	99	87.816	ENSTNIG00000011019	snd1	98	90.101	Tetraodon_nigroviridis
ENSIPUG00000013279	snd1	93	78.052	ENSTBEG00000003999	SND1	100	78.052	Tupaia_belangeri
ENSIPUG00000013279	snd1	98	79.733	ENSTTRG00000006059	SND1	100	78.775	Tursiops_truncatus
ENSIPUG00000013279	snd1	70	75.718	ENSUAMG00000002820	-	89	75.718	Ursus_americanus
ENSIPUG00000013279	snd1	87	82.955	ENSUAMG00000005604	-	93	82.955	Ursus_americanus
ENSIPUG00000013279	snd1	100	82.932	ENSUMAG00000005960	SND1	100	82.932	Ursus_maritimus
ENSIPUG00000013279	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSIPUG00000013279	snd1	100	82.713	ENSVVUG00000007226	SND1	100	82.713	Vulpes_vulpes
ENSIPUG00000013279	snd1	97	79.190	ENSXETG00000023043	snd1	100	80.000	Xenopus_tropicalis
ENSIPUG00000013279	snd1	92	86.256	ENSXCOG00000013629	snd1	99	86.256	Xiphophorus_couchianus
ENSIPUG00000013279	snd1	99	88.913	ENSXMAG00000011469	snd1	99	88.913	Xiphophorus_maculatus