EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000013629 (Gene tree)
Gene ID: 108259264
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 24446 bases
Position: chr27:16972324-16996769
Accession: 108259264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000020262	R3H	PF01424.22	8e-13	1	1
ENSIPUP00000020219	R3H	PF01424.22	9.3e-13	1	1
ENSIPUP00000020173	R3H	PF01424.22	9.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000021043	-	5069	XM_017458566	ENSIPUP00000020173	1043 (aa)	XP_017314055	A0A2D0Q8L5
ENSIPUT00000021090	-	4985	XM_017458569	ENSIPUP00000020219	1015 (aa)	XP_017314058	-
ENSIPUT00000021134	-	4808	XM_017458573	ENSIPUP00000020262	956 (aa)	XP_017314062	-

Gene Model

Click here to download ENSIPUG00000013629's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013629's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000013629	r3hdm1	88	65.229	ENSIPUG00000001676	R3HDM1	91	72.100
ENSIPUG00000013629	r3hdm1	51	36.364	ENSIPUG00000020552	arpp21	75	38.208

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013629	r3hdm1	95	69.497	ENSG00000048991	R3HDM1	89	68.615	Homo_sapiens
ENSIPUG00000013629	r3hdm1	86	69.608	ENSAPOG00000020850	r3hdm1	83	70.588	Acanthochromis_polyacanthus
ENSIPUG00000013629	r3hdm1	95	69.375	ENSAMEG00000014886	R3HDM1	85	67.771	Ailuropoda_melanoleuca
ENSIPUG00000013629	r3hdm1	82	69.608	ENSAOCG00000005192	r3hdm1	83	70.588	Amphiprion_ocellaris
ENSIPUG00000013629	r3hdm1	88	61.456	ENSAPEG00000016108	r3hdm1	91	62.264	Amphiprion_percula
ENSIPUG00000013629	r3hdm1	89	49.146	ENSATEG00000000232	r3hdm1	91	62.973	Anabas_testudineus
ENSIPUG00000013629	r3hdm1	95	70.625	ENSAPLG00000015231	R3HDM1	85	68.976	Anas_platyrhynchos
ENSIPUG00000013629	r3hdm1	95	69.688	ENSACAG00000001676	R3HDM1	86	68.072	Anolis_carolinensis
ENSIPUG00000013629	r3hdm1	94	70.288	ENSANAG00000035334	R3HDM1	89	68.615	Aotus_nancymaae
ENSIPUG00000013629	r3hdm1	88	61.622	ENSACLG00000027282	r3hdm1	91	62.432	Astatotilapia_calliptera
ENSIPUG00000013629	r3hdm1	99	79.310	ENSAMXG00000003536	r3hdm1	99	73.973	Astyanax_mexicanus
ENSIPUG00000013629	r3hdm1	94	75.238	ENSAMXG00000012861	R3HDM1	89	75.316	Astyanax_mexicanus
ENSIPUG00000013629	r3hdm1	62	36.323	ENSAMXG00000020587	arpp21	84	55.285	Astyanax_mexicanus
ENSIPUG00000013629	r3hdm1	95	68.125	ENSBTAG00000013302	R3HDM1	86	66.566	Bos_taurus
ENSIPUG00000013629	r3hdm1	100	51.559	ENSCJAG00000011718	R3HDM1	89	68.615	Callithrix_jacchus
ENSIPUG00000013629	r3hdm1	95	69.375	ENSCAFG00000005075	R3HDM1	85	67.771	Canis_familiaris
ENSIPUG00000013629	r3hdm1	95	69.375	ENSCAFG00020016119	R3HDM1	86	67.771	Canis_lupus_dingo
ENSIPUG00000013629	r3hdm1	95	69.132	ENSCHIG00000020851	R3HDM1	85	67.169	Capra_hircus
ENSIPUG00000013629	r3hdm1	95	65.109	ENSCPOG00000012784	R3HDM1	93	60.310	Cavia_porcellus
ENSIPUG00000013629	r3hdm1	94	70.288	ENSCCAG00000027199	R3HDM1	89	68.615	Cebus_capucinus
ENSIPUG00000013629	r3hdm1	95	69.811	ENSCATG00000023642	R3HDM1	89	68.923	Cercocebus_atys
ENSIPUG00000013629	r3hdm1	95	67.913	ENSCLAG00000007962	R3HDM1	91	62.084	Chinchilla_lanigera
ENSIPUG00000013629	r3hdm1	95	69.182	ENSCSAG00000016356	R3HDM1	85	67.372	Chlorocebus_sabaeus
ENSIPUG00000013629	r3hdm1	82	67.883	ENSCHOG00000013638	R3HDM1	81	67.883	Choloepus_hoffmanni
ENSIPUG00000013629	r3hdm1	90	75.191	ENSCPBG00000009645	R3HDM1	93	72.438	Chrysemys_picta_bellii
ENSIPUG00000013629	r3hdm1	95	68.868	ENSCANG00000034748	R3HDM1	85	67.069	Colobus_angolensis_palliatus
ENSIPUG00000013629	r3hdm1	94	68.536	ENSCGRG00001012357	R3hdm1	82	66.967	Cricetulus_griseus_chok1gshd
ENSIPUG00000013629	r3hdm1	95	68.536	ENSCGRG00000012080	R3hdm1	91	61.978	Cricetulus_griseus_crigri
ENSIPUG00000013629	r3hdm1	83	65.714	ENSCSEG00000008944	r3hdm1	86	66.667	Cynoglossus_semilaevis
ENSIPUG00000013629	r3hdm1	81	70.764	ENSCVAG00000007582	r3hdm1	91	63.073	Cyprinodon_variegatus
ENSIPUG00000013629	r3hdm1	67	34.735	ENSDARG00000061081	arpp21	55	47.661	Danio_rerio
ENSIPUG00000013629	r3hdm1	94	64.557	ENSDNOG00000000771	R3HDM1	85	63.110	Dasypus_novemcinctus
ENSIPUG00000013629	r3hdm1	88	67.901	ENSETEG00000013606	R3HDM1	82	55.098	Echinops_telfairi
ENSIPUG00000013629	r3hdm1	57	40.575	ENSEBUG00000014746	arpp21	98	39.780	Eptatretus_burgeri
ENSIPUG00000013629	r3hdm1	95	69.062	ENSEASG00005007392	R3HDM1	93	61.140	Equus_asinus_asinus
ENSIPUG00000013629	r3hdm1	95	70.096	ENSECAG00000019114	R3HDM1	87	67.470	Equus_caballus
ENSIPUG00000013629	r3hdm1	71	57.737	ENSEEUG00000012589	R3HDM1	68	56.710	Erinaceus_europaeus
ENSIPUG00000013629	r3hdm1	89	77.323	ENSELUG00000004909	R3HDM1	89	66.967	Esox_lucius
ENSIPUG00000013629	r3hdm1	88	56.504	ENSELUG00000014413	r3hdm1	83	77.941	Esox_lucius
ENSIPUG00000013629	r3hdm1	95	69.775	ENSFCAG00000027113	R3HDM1	89	68.923	Felis_catus
ENSIPUG00000013629	r3hdm1	65	70.476	ENSFALG00000013731	R3HDM1	81	65.278	Ficedula_albicollis
ENSIPUG00000013629	r3hdm1	95	68.536	ENSFDAG00000016478	R3HDM1	93	61.555	Fukomys_damarensis
ENSIPUG00000013629	r3hdm1	82	68.954	ENSFHEG00000018713	r3hdm1	91	62.903	Fundulus_heteroclitus
ENSIPUG00000013629	r3hdm1	59	80.000	ENSGMOG00000006042	-	82	63.830	Gadus_morhua
ENSIPUG00000013629	r3hdm1	86	71.711	ENSGALG00000012246	R3HDM1	99	71.711	Gallus_gallus
ENSIPUG00000013629	r3hdm1	88	61.892	ENSGAFG00000006203	r3hdm1	91	62.703	Gambusia_affinis
ENSIPUG00000013629	r3hdm1	86	68.506	ENSGACG00000014925	r3hdm1	96	47.676	Gasterosteus_aculeatus
ENSIPUG00000013629	r3hdm1	95	69.062	ENSGAGG00000007840	R3HDM1	87	65.896	Gopherus_agassizii
ENSIPUG00000013629	r3hdm1	94	70.288	ENSGGOG00000008156	R3HDM1	89	68.615	Gorilla_gorilla
ENSIPUG00000013629	r3hdm1	95	68.536	ENSHGLG00000015718	R3HDM1	91	62.084	Heterocephalus_glaber_female
ENSIPUG00000013629	r3hdm1	95	68.536	ENSHGLG00100003184	-	91	62.084	Heterocephalus_glaber_male
ENSIPUG00000013629	r3hdm1	91	53.025	ENSHGLG00100015374	-	94	44.217	Heterocephalus_glaber_male
ENSIPUG00000013629	r3hdm1	86	60.641	ENSHCOG00000013366	r3hdm1	88	62.275	Hippocampus_comes
ENSIPUG00000013629	r3hdm1	95	68.536	ENSSTOG00000007572	R3HDM1	91	62.637	Ictidomys_tridecemlineatus
ENSIPUG00000013629	r3hdm1	94	69.775	ENSLACG00000005334	R3HDM1	90	66.176	Latimeria_chalumnae
ENSIPUG00000013629	r3hdm1	94	71.028	ENSLOCG00000001641	r3hdm1	85	68.286	Lepisosteus_oculatus
ENSIPUG00000013629	r3hdm1	95	68.536	ENSLAFG00000009065	R3HDM1	86	66.967	Loxodonta_africana
ENSIPUG00000013629	r3hdm1	100	51.165	ENSMFAG00000030331	R3HDM1	89	68.615	Macaca_fascicularis
ENSIPUG00000013629	r3hdm1	100	51.068	ENSMMUG00000009844	R3HDM1	89	68.615	Macaca_mulatta
ENSIPUG00000013629	r3hdm1	95	69.497	ENSMNEG00000027793	R3HDM1	89	68.615	Macaca_nemestrina
ENSIPUG00000013629	r3hdm1	100	51.165	ENSMLEG00000043189	R3HDM1	89	68.615	Mandrillus_leucophaeus
ENSIPUG00000013629	r3hdm1	82	68.371	ENSMAMG00000004532	r3hdm1	84	69.329	Mastacembelus_armatus
ENSIPUG00000013629	r3hdm1	82	68.954	ENSMZEG00005003157	r3hdm1	91	62.432	Maylandia_zebra
ENSIPUG00000013629	r3hdm1	95	69.937	ENSMGAG00000012461	R3HDM1	85	68.373	Meleagris_gallopavo
ENSIPUG00000013629	r3hdm1	95	68.847	ENSMAUG00000010315	R3hdm1	91	61.978	Mesocricetus_auratus
ENSIPUG00000013629	r3hdm1	94	70.288	ENSMICG00000005900	-	89	68.615	Microcebus_murinus
ENSIPUG00000013629	r3hdm1	96	50.765	ENSMICG00000042655	-	98	52.242	Microcebus_murinus
ENSIPUG00000013629	r3hdm1	84	68.421	ENSMODG00000000923	R3HDM1	81	67.066	Monodelphis_domestica
ENSIPUG00000013629	r3hdm1	99	59.500	ENSMALG00000009000	r3hdm1	91	60.250	Monopterus_albus
ENSIPUG00000013629	r3hdm1	95	69.159	MGP_CAROLIEiJ_G0014543	R3hdm1	100	63.600	Mus_caroli
ENSIPUG00000013629	r3hdm1	95	69.159	ENSMUSG00000056211	R3hdm1	100	63.600	Mus_musculus
ENSIPUG00000013629	r3hdm1	95	69.159	MGP_PahariEiJ_G0027779	R3hdm1	100	63.600	Mus_pahari
ENSIPUG00000013629	r3hdm1	95	69.159	MGP_SPRETEiJ_G0015350	R3hdm1	100	63.600	Mus_spretus
ENSIPUG00000013629	r3hdm1	95	69.375	ENSMPUG00000002412	R3HDM1	85	67.771	Mustela_putorius_furo
ENSIPUG00000013629	r3hdm1	95	68.438	ENSMLUG00000013824	R3HDM1	85	66.867	Myotis_lucifugus
ENSIPUG00000013629	r3hdm1	94	70.288	ENSNLEG00000008622	R3HDM1	89	68.615	Nomascus_leucogenys
ENSIPUG00000013629	r3hdm1	80	51.538	ENSMEUG00000011784	R3HDM1	84	50.965	Notamacropus_eugenii
ENSIPUG00000013629	r3hdm1	95	68.224	ENSODEG00000008607	R3HDM1	91	62.306	Octodon_degus
ENSIPUG00000013629	r3hdm1	94	47.529	ENSONIG00000012017	r3hdm1	86	65.325	Oreochromis_niloticus
ENSIPUG00000013629	r3hdm1	95	69.688	ENSOANG00000007987	R3HDM1	83	68.072	Ornithorhynchus_anatinus
ENSIPUG00000013629	r3hdm1	84	67.601	ENSOCUG00000017366	R3HDM1	82	66.066	Oryctolagus_cuniculus
ENSIPUG00000013629	r3hdm1	81	69.103	ENSORLG00000004297	r3hdm1	83	70.100	Oryzias_latipes
ENSIPUG00000013629	r3hdm1	81	69.435	ENSORLG00015017355	r3hdm1	83	70.432	Oryzias_latipes_hsok
ENSIPUG00000013629	r3hdm1	95	52.220	ENSOGAG00000003136	R3HDM1	85	66.967	Otolemur_garnettii
ENSIPUG00000013629	r3hdm1	95	68.750	ENSOARG00000010788	R3HDM1	85	67.169	Ovis_aries
ENSIPUG00000013629	r3hdm1	94	70.288	ENSPPAG00000027858	R3HDM1	85	67.674	Pan_paniscus
ENSIPUG00000013629	r3hdm1	94	70.288	ENSPPRG00000002626	R3HDM1	89	68.615	Panthera_pardus
ENSIPUG00000013629	r3hdm1	94	70.607	ENSPTIG00000016581	R3HDM1	89	68.923	Panthera_tigris_altaica
ENSIPUG00000013629	r3hdm1	95	69.497	ENSPTRG00000012494	R3HDM1	85	67.674	Pan_troglodytes
ENSIPUG00000013629	r3hdm1	100	51.165	ENSPANG00000026448	R3HDM1	89	68.615	Papio_anubis
ENSIPUG00000013629	r3hdm1	95	72.785	ENSPKIG00000004328	r3hdm1	93	70.783	Paramormyrops_kingsleyae
ENSIPUG00000013629	r3hdm1	95	69.375	ENSPSIG00000012915	R3HDM1	85	67.771	Pelodiscus_sinensis
ENSIPUG00000013629	r3hdm1	95	68.536	ENSPEMG00000015187	R3hdm1	91	62.198	Peromyscus_maniculatus_bairdii
ENSIPUG00000013629	r3hdm1	71	59.077	ENSPMAG00000003369	-	88	58.929	Petromyzon_marinus
ENSIPUG00000013629	r3hdm1	94	70.701	ENSPCIG00000002491	R3HDM1	93	62.274	Phascolarctos_cinereus
ENSIPUG00000013629	r3hdm1	88	56.750	ENSPFOG00000015036	r3hdm1	91	57.500	Poecilia_formosa
ENSIPUG00000013629	r3hdm1	89	48.473	ENSPLAG00000018042	r3hdm1	91	61.789	Poecilia_latipinna
ENSIPUG00000013629	r3hdm1	88	60.976	ENSPMEG00000023947	r3hdm1	91	61.789	Poecilia_mexicana
ENSIPUG00000013629	r3hdm1	81	68.647	ENSPREG00000007902	r3hdm1	95	59.913	Poecilia_reticulata
ENSIPUG00000013629	r3hdm1	95	52.611	ENSPPYG00000012815	R3HDM1	91	53.713	Pongo_abelii
ENSIPUG00000013629	r3hdm1	83	72.881	ENSPCAG00000006208	R3HDM1	80	72.881	Procavia_capensis
ENSIPUG00000013629	r3hdm1	90	73.529	ENSPCOG00000012698	R3HDM1	87	71.479	Propithecus_coquereli
ENSIPUG00000013629	r3hdm1	83	54.183	ENSPVAG00000006098	R3HDM1	85	59.760	Pteropus_vampyrus
ENSIPUG00000013629	r3hdm1	87	74.110	ENSPNAG00000005436	R3HDM1	98	59.291	Pygocentrus_nattereri
ENSIPUG00000013629	r3hdm1	99	79.045	ENSPNAG00000013952	r3hdm1	99	74.472	Pygocentrus_nattereri
ENSIPUG00000013629	r3hdm1	95	68.536	ENSRNOG00000004099	R3hdm1	92	52.007	Rattus_norvegicus
ENSIPUG00000013629	r3hdm1	90	73.432	ENSRBIG00000033317	R3HDM1	99	54.601	Rhinopithecus_bieti
ENSIPUG00000013629	r3hdm1	95	69.182	ENSRROG00000034534	R3HDM1	93	60.622	Rhinopithecus_roxellana
ENSIPUG00000013629	r3hdm1	94	70.288	ENSSBOG00000020389	R3HDM1	85	67.267	Saimiri_boliviensis_boliviensis
ENSIPUG00000013629	r3hdm1	94	70.032	ENSSHAG00000016999	R3HDM1	93	62.274	Sarcophilus_harrisii
ENSIPUG00000013629	r3hdm1	94	77.199	ENSSFOG00015014134	r3hdm1	95	60.405	Scleropages_formosus
ENSIPUG00000013629	r3hdm1	95	56.958	ENSSFOG00015019851	-	99	58.425	Scleropages_formosus
ENSIPUG00000013629	r3hdm1	93	69.536	ENSSMAG00000001669	r3hdm1	70	70.297	Scophthalmus_maximus
ENSIPUG00000013629	r3hdm1	82	69.935	ENSSDUG00000010749	r3hdm1	100	48.067	Seriola_dumerili
ENSIPUG00000013629	r3hdm1	93	70.261	ENSSLDG00000004499	r3hdm1	68	71.242	Seriola_lalandi_dorsalis
ENSIPUG00000013629	r3hdm1	63	62.963	ENSSARG00000000352	-	55	62.963	Sorex_araneus
ENSIPUG00000013629	r3hdm1	95	69.062	ENSSPUG00000004167	R3HDM1	85	67.470	Sphenodon_punctatus
ENSIPUG00000013629	r3hdm1	82	69.935	ENSSPAG00000004648	r3hdm1	100	46.819	Stegastes_partitus
ENSIPUG00000013629	r3hdm1	95	69.132	ENSSSCG00000015692	R3HDM1	89	68.308	Sus_scrofa
ENSIPUG00000013629	r3hdm1	95	70.159	ENSTGUG00000011750	R3HDM1	87	65.000	Taeniopygia_guttata
ENSIPUG00000013629	r3hdm1	81	67.763	ENSTRUG00000011654	r3hdm1	91	59.631	Takifugu_rubripes
ENSIPUG00000013629	r3hdm1	82	66.019	ENSTNIG00000010362	r3hdm1	83	65.517	Tetraodon_nigroviridis
ENSIPUG00000013629	r3hdm1	90	54.707	ENSTTRG00000003935	R3HDM1	79	68.827	Tursiops_truncatus
ENSIPUG00000013629	r3hdm1	61	69.375	ENSUAMG00000024806	R3HDM1	98	53.898	Ursus_americanus
ENSIPUG00000013629	r3hdm1	100	62.567	ENSUMAG00000005552	R3HDM1	93	61.399	Ursus_maritimus
ENSIPUG00000013629	r3hdm1	90	69.231	ENSVPAG00000007333	R3HDM1	81	67.368	Vicugna_pacos
ENSIPUG00000013629	r3hdm1	95	69.375	ENSVVUG00000006457	R3HDM1	93	61.399	Vulpes_vulpes
ENSIPUG00000013629	r3hdm1	83	68.269	ENSXETG00000019330	r3hdm1	82	66.462	Xenopus_tropicalis
ENSIPUG00000013629	r3hdm1	63	68.852	ENSXCOG00000017448	r3hdm1	81	68.254	Xiphophorus_couchianus
ENSIPUG00000013629	r3hdm1	89	62.162	ENSXMAG00000007885	r3hdm1	89	62.973	Xiphophorus_maculatus