EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013652 (Gene tree)
Gene ID: 108259280
Gene Symbol: pop4
Alias: zgc:110597
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 3022 bases
Position: chr27:200533-203554
Accession: 108259280
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000020120	UPF0086	PF01868.16	4.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000020990	-	1746	XM_017458612	ENSIPUP00000020120	220 (aa)	XP_017314101	A0A2D0Q8R2

Gene Model

Click here to download ENSIPUG00000013652's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG
ipu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013652's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013652	pop4	100	60.000	ENSG00000105171	POP4	100	72.917	Homo_sapiens
ENSIPUG00000013652	pop4	99	58.716	ENSAMEG00000018329	-	99	58.716	Ailuropoda_melanoleuca
ENSIPUG00000013652	pop4	95	53.333	ENSAMEG00000003172	-	94	53.333	Ailuropoda_melanoleuca
ENSIPUG00000013652	pop4	99	63.470	ENSACIG00000008358	pop4	99	63.470	Amphilophus_citrinellus
ENSIPUG00000013652	pop4	91	65.196	ENSAOCG00000010116	pop4	98	65.196	Amphiprion_ocellaris
ENSIPUG00000013652	pop4	99	62.162	ENSAPEG00000002829	pop4	93	62.162	Amphiprion_percula
ENSIPUG00000013652	pop4	100	65.766	ENSATEG00000013028	pop4	100	65.766	Anabas_testudineus
ENSIPUG00000013652	pop4	95	55.981	ENSAPLG00000014051	POP4	100	55.981	Anas_platyrhynchos
ENSIPUG00000013652	pop4	100	61.364	ENSANAG00000020295	POP4	100	61.364	Aotus_nancymaae
ENSIPUG00000013652	pop4	99	63.014	ENSACLG00000000526	pop4	99	63.014	Astatotilapia_calliptera
ENSIPUG00000013652	pop4	100	77.273	ENSAMXG00000002899	pop4	100	77.273	Astyanax_mexicanus
ENSIPUG00000013652	pop4	100	61.364	ENSBTAG00000002223	POP4	100	61.364	Bos_taurus
ENSIPUG00000013652	pop4	53	31.624	WBGene00007603	C15C6.4	57	31.624	Caenorhabditis_elegans
ENSIPUG00000013652	pop4	100	60.633	ENSCJAG00000046750	POP4	98	66.667	Callithrix_jacchus
ENSIPUG00000013652	pop4	83	62.088	ENSCAFG00000007630	POP4	100	62.088	Canis_familiaris
ENSIPUG00000013652	pop4	100	60.909	ENSCHIG00000016743	POP4	100	60.909	Capra_hircus
ENSIPUG00000013652	pop4	100	59.545	ENSTSYG00000003488	POP4	100	59.545	Carlito_syrichta
ENSIPUG00000013652	pop4	99	46.083	ENSCAPG00000011105	POP4	100	46.083	Cavia_aperea
ENSIPUG00000013652	pop4	100	61.364	ENSCPOG00000002992	POP4	100	61.364	Cavia_porcellus
ENSIPUG00000013652	pop4	100	51.364	ENSCCAG00000034244	-	100	52.489	Cebus_capucinus
ENSIPUG00000013652	pop4	100	60.909	ENSCCAG00000020285	-	100	60.909	Cebus_capucinus
ENSIPUG00000013652	pop4	100	60.455	ENSCATG00000036022	POP4	100	72.917	Cercocebus_atys
ENSIPUG00000013652	pop4	100	60.000	ENSCLAG00000013162	POP4	100	60.000	Chinchilla_lanigera
ENSIPUG00000013652	pop4	99	60.550	ENSCSAG00000004868	POP4	100	60.550	Chlorocebus_sabaeus
ENSIPUG00000013652	pop4	95	45.673	ENSCHOG00000002071	POP4	96	45.673	Choloepus_hoffmanni
ENSIPUG00000013652	pop4	100	60.909	ENSCPBG00000016132	POP4	100	60.909	Chrysemys_picta_bellii
ENSIPUG00000013652	pop4	84	31.937	ENSCING00000023871	-	94	32.461	Ciona_intestinalis
ENSIPUG00000013652	pop4	88	64.948	ENSCANG00000005924	POP4	96	64.948	Colobus_angolensis_palliatus
ENSIPUG00000013652	pop4	100	57.727	ENSCGRG00001017185	Pop4	100	58.182	Cricetulus_griseus_chok1gshd
ENSIPUG00000013652	pop4	100	57.727	ENSCGRG00000008155	Pop4	100	58.182	Cricetulus_griseus_crigri
ENSIPUG00000013652	pop4	97	55.349	ENSCSEG00000002946	pop4	97	55.814	Cynoglossus_semilaevis
ENSIPUG00000013652	pop4	99	49.550	ENSCVAG00000018602	POP4	95	49.550	Cyprinodon_variegatus
ENSIPUG00000013652	pop4	100	71.818	ENSDARG00000101472	pop4	100	71.818	Danio_rerio
ENSIPUG00000013652	pop4	100	60.455	ENSDNOG00000047663	POP4	88	60.455	Dasypus_novemcinctus
ENSIPUG00000013652	pop4	78	56.395	ENSDORG00000008577	Pop4	100	56.395	Dipodomys_ordii
ENSIPUG00000013652	pop4	86	33.498	FBgn0035831	CG8038	97	33.498	Drosophila_melanogaster
ENSIPUG00000013652	pop4	99	51.152	ENSETEG00000003607	POP4	100	51.152	Echinops_telfairi
ENSIPUG00000013652	pop4	88	46.860	ENSEBUG00000010447	pop4	81	46.860	Eptatretus_burgeri
ENSIPUG00000013652	pop4	95	43.062	ENSEBUG00000008575	pop4	94	43.062	Eptatretus_burgeri
ENSIPUG00000013652	pop4	88	41.546	ENSEBUG00000004305	pop4	90	41.546	Eptatretus_burgeri
ENSIPUG00000013652	pop4	100	67.308	ENSECAG00000020206	POP4	82	67.308	Equus_caballus
ENSIPUG00000013652	pop4	88	46.907	ENSEEUG00000013109	POP4	97	46.907	Erinaceus_europaeus
ENSIPUG00000013652	pop4	100	65.000	ENSELUG00000019812	pop4	100	65.000	Esox_lucius
ENSIPUG00000013652	pop4	100	59.545	ENSFCAG00000001619	POP4	100	59.545	Felis_catus
ENSIPUG00000013652	pop4	97	57.746	ENSFALG00000000206	POP4	95	57.746	Ficedula_albicollis
ENSIPUG00000013652	pop4	100	60.909	ENSFDAG00000017859	POP4	100	60.909	Fukomys_damarensis
ENSIPUG00000013652	pop4	98	54.338	ENSFHEG00000012745	pop4	98	54.338	Fundulus_heteroclitus
ENSIPUG00000013652	pop4	89	64.141	ENSGMOG00000000335	pop4	98	64.141	Gadus_morhua
ENSIPUG00000013652	pop4	100	56.364	ENSGALG00000041972	POP4	92	56.364	Gallus_gallus
ENSIPUG00000013652	pop4	79	55.367	ENSGAFG00000003571	pop4	98	55.367	Gambusia_affinis
ENSIPUG00000013652	pop4	99	63.348	ENSGACG00000014510	pop4	94	71.676	Gasterosteus_aculeatus
ENSIPUG00000013652	pop4	100	61.818	ENSGAGG00000024544	POP4	79	61.818	Gopherus_agassizii
ENSIPUG00000013652	pop4	99	60.550	ENSGGOG00000038346	POP4	99	60.550	Gorilla_gorilla
ENSIPUG00000013652	pop4	99	63.014	ENSHBUG00000021821	pop4	99	63.014	Haplochromis_burtoni
ENSIPUG00000013652	pop4	99	59.633	ENSHGLG00000015798	POP4	99	59.633	Heterocephalus_glaber_female
ENSIPUG00000013652	pop4	100	59.545	ENSHGLG00100009737	POP4	100	59.545	Heterocephalus_glaber_male
ENSIPUG00000013652	pop4	99	62.273	ENSHCOG00000020937	pop4	99	62.273	Hippocampus_comes
ENSIPUG00000013652	pop4	100	61.364	ENSSTOG00000011016	POP4	100	61.364	Ictidomys_tridecemlineatus
ENSIPUG00000013652	pop4	100	61.364	ENSJJAG00000013376	Pop4	100	61.364	Jaculus_jaculus
ENSIPUG00000013652	pop4	99	63.348	ENSKMAG00000012250	pop4	99	63.348	Kryptolebias_marmoratus
ENSIPUG00000013652	pop4	99	59.729	ENSLBEG00000014139	pop4	99	60.181	Labrus_bergylta
ENSIPUG00000013652	pop4	99	60.181	ENSLBEG00000018846	-	99	60.633	Labrus_bergylta
ENSIPUG00000013652	pop4	100	55.909	ENSLACG00000008581	POP4	99	55.909	Latimeria_chalumnae
ENSIPUG00000013652	pop4	100	66.818	ENSLOCG00000005597	pop4	100	66.818	Lepisosteus_oculatus
ENSIPUG00000013652	pop4	100	59.091	ENSLAFG00000000084	POP4	100	59.091	Loxodonta_africana
ENSIPUG00000013652	pop4	100	60.455	ENSMFAG00000029606	POP4	100	60.455	Macaca_fascicularis
ENSIPUG00000013652	pop4	100	60.181	ENSMMUG00000017424	POP4	100	60.181	Macaca_mulatta
ENSIPUG00000013652	pop4	100	59.729	ENSMNEG00000031374	POP4	100	59.729	Macaca_nemestrina
ENSIPUG00000013652	pop4	100	59.545	ENSMLEG00000043454	POP4	100	59.545	Mandrillus_leucophaeus
ENSIPUG00000013652	pop4	99	65.315	ENSMAMG00000011716	pop4	99	65.315	Mastacembelus_armatus
ENSIPUG00000013652	pop4	99	63.014	ENSMZEG00005002360	pop4	99	63.014	Maylandia_zebra
ENSIPUG00000013652	pop4	99	57.339	ENSMGAG00000005337	POP4	97	57.339	Meleagris_gallopavo
ENSIPUG00000013652	pop4	100	57.273	ENSMAUG00000020110	Pop4	100	57.273	Mesocricetus_auratus
ENSIPUG00000013652	pop4	99	59.633	ENSMICG00000035730	POP4	98	59.633	Microcebus_murinus
ENSIPUG00000013652	pop4	99	63.014	ENSMMOG00000015321	pop4	99	63.014	Mola_mola
ENSIPUG00000013652	pop4	99	58.904	ENSMODG00000029406	POP4	90	61.538	Monodelphis_domestica
ENSIPUG00000013652	pop4	99	64.384	ENSMALG00000012571	pop4	99	64.384	Monopterus_albus
ENSIPUG00000013652	pop4	100	57.466	MGP_CAROLIEiJ_G0029600	Pop4	100	57.466	Mus_caroli
ENSIPUG00000013652	pop4	100	57.466	ENSMUSG00000030423	Pop4	100	57.466	Mus_musculus
ENSIPUG00000013652	pop4	100	57.273	MGP_SPRETEiJ_G0030699	Pop4	100	57.273	Mus_spretus
ENSIPUG00000013652	pop4	100	49.774	ENSMPUG00000008063	-	100	49.774	Mustela_putorius_furo
ENSIPUG00000013652	pop4	100	58.636	ENSMPUG00000008041	-	100	58.636	Mustela_putorius_furo
ENSIPUG00000013652	pop4	99	49.315	ENSMLUG00000010774	POP4	99	49.315	Myotis_lucifugus
ENSIPUG00000013652	pop4	57	71.200	ENSMEUG00000003636	-	100	71.200	Notamacropus_eugenii
ENSIPUG00000013652	pop4	88	63.918	ENSOPRG00000004736	POP4	97	63.918	Ochotona_princeps
ENSIPUG00000013652	pop4	99	60.369	ENSODEG00000013025	POP4	98	62.500	Octodon_degus
ENSIPUG00000013652	pop4	99	63.470	ENSONIG00000003458	pop4	97	63.470	Oreochromis_niloticus
ENSIPUG00000013652	pop4	100	59.091	ENSOCUG00000015974	POP4	100	59.091	Oryctolagus_cuniculus
ENSIPUG00000013652	pop4	99	61.538	ENSORLG00000020317	pop4	99	61.538	Oryzias_latipes
ENSIPUG00000013652	pop4	99	61.086	ENSORLG00015011624	pop4	99	61.086	Oryzias_latipes_hsok
ENSIPUG00000013652	pop4	99	61.086	ENSOMEG00000002538	pop4	99	61.086	Oryzias_melastigma
ENSIPUG00000013652	pop4	99	60.550	ENSOGAG00000011168	POP4	99	60.550	Otolemur_garnettii
ENSIPUG00000013652	pop4	100	61.712	ENSOARG00000004041	POP4	100	61.712	Ovis_aries
ENSIPUG00000013652	pop4	100	60.455	ENSPPAG00000040372	POP4	100	60.455	Pan_paniscus
ENSIPUG00000013652	pop4	100	59.545	ENSPPRG00000010502	POP4	100	59.545	Panthera_pardus
ENSIPUG00000013652	pop4	100	59.545	ENSPTIG00000016598	POP4	100	59.545	Panthera_tigris_altaica
ENSIPUG00000013652	pop4	100	60.455	ENSPTRG00000010779	POP4	100	60.455	Pan_troglodytes
ENSIPUG00000013652	pop4	100	60.455	ENSPANG00000008546	POP4	100	60.455	Papio_anubis
ENSIPUG00000013652	pop4	91	65.025	ENSPKIG00000004468	pop4	89	66.667	Paramormyrops_kingsleyae
ENSIPUG00000013652	pop4	100	60.909	ENSPSIG00000015690	POP4	100	61.881	Pelodiscus_sinensis
ENSIPUG00000013652	pop4	90	56.863	ENSPMGG00000008608	pop4	98	57.353	Periophthalmus_magnuspinnatus
ENSIPUG00000013652	pop4	100	57.273	ENSPEMG00000014034	-	100	58.796	Peromyscus_maniculatus_bairdii
ENSIPUG00000013652	pop4	99	49.309	ENSPEMG00000019982	-	99	49.309	Peromyscus_maniculatus_bairdii
ENSIPUG00000013652	pop4	66	61.379	ENSPMAG00000006265	pop4	100	50.000	Petromyzon_marinus
ENSIPUG00000013652	pop4	100	58.636	ENSPCIG00000024738	POP4	95	58.636	Phascolarctos_cinereus
ENSIPUG00000013652	pop4	99	59.545	ENSPFOG00000000925	pop4	99	59.545	Poecilia_formosa
ENSIPUG00000013652	pop4	99	60.000	ENSPLAG00000003161	pop4	99	60.000	Poecilia_latipinna
ENSIPUG00000013652	pop4	99	59.545	ENSPMEG00000002475	pop4	99	59.545	Poecilia_mexicana
ENSIPUG00000013652	pop4	99	60.455	ENSPREG00000022403	pop4	93	60.455	Poecilia_reticulata
ENSIPUG00000013652	pop4	100	60.455	ENSPPYG00000009805	POP4	100	60.455	Pongo_abelii
ENSIPUG00000013652	pop4	88	65.464	ENSPCAG00000007737	POP4	88	65.464	Procavia_capensis
ENSIPUG00000013652	pop4	100	61.364	ENSPCOG00000018055	POP4	100	61.364	Propithecus_coquereli
ENSIPUG00000013652	pop4	100	60.000	ENSPVAG00000006069	POP4	100	60.000	Pteropus_vampyrus
ENSIPUG00000013652	pop4	99	63.470	ENSPNYG00000020038	pop4	99	63.470	Pundamilia_nyererei
ENSIPUG00000013652	pop4	100	76.818	ENSPNAG00000005591	pop4	100	76.818	Pygocentrus_nattereri
ENSIPUG00000013652	pop4	100	59.276	ENSRNOG00000027646	Pop4	100	59.276	Rattus_norvegicus
ENSIPUG00000013652	pop4	80	56.000	ENSRBIG00000044769	POP4	90	61.151	Rhinopithecus_bieti
ENSIPUG00000013652	pop4	100	60.455	ENSRROG00000028903	POP4	100	60.455	Rhinopithecus_roxellana
ENSIPUG00000013652	pop4	100	60.909	ENSSBOG00000032445	POP4	100	60.909	Saimiri_boliviensis_boliviensis
ENSIPUG00000013652	pop4	95	61.058	ENSSHAG00000016888	POP4	95	61.058	Sarcophilus_harrisii
ENSIPUG00000013652	pop4	99	66.210	ENSSFOG00015014556	pop4	98	66.210	Scleropages_formosus
ENSIPUG00000013652	pop4	99	66.063	ENSSMAG00000016611	pop4	99	66.063	Scophthalmus_maximus
ENSIPUG00000013652	pop4	99	63.514	ENSSDUG00000019865	pop4	89	63.514	Seriola_dumerili
ENSIPUG00000013652	pop4	99	63.964	ENSSLDG00000001763	pop4	99	63.964	Seriola_lalandi_dorsalis
ENSIPUG00000013652	pop4	95	60.577	ENSSARG00000004748	POP4	96	60.577	Sorex_araneus
ENSIPUG00000013652	pop4	99	64.414	ENSSPAG00000014364	pop4	99	64.414	Stegastes_partitus
ENSIPUG00000013652	pop4	100	60.000	ENSSSCG00000002854	POP4	100	60.000	Sus_scrofa
ENSIPUG00000013652	pop4	90	58.291	ENSTGUG00000008953	POP4	99	58.291	Taeniopygia_guttata
ENSIPUG00000013652	pop4	92	66.502	ENSTNIG00000006401	pop4	100	66.502	Tetraodon_nigroviridis
ENSIPUG00000013652	pop4	100	62.896	ENSTBEG00000002194	POP4	100	62.896	Tupaia_belangeri
ENSIPUG00000013652	pop4	100	59.545	ENSTTRG00000005882	POP4	100	59.545	Tursiops_truncatus
ENSIPUG00000013652	pop4	100	58.182	ENSUAMG00000003049	-	100	58.182	Ursus_americanus
ENSIPUG00000013652	pop4	100	58.182	ENSUMAG00000007522	-	100	58.182	Ursus_maritimus
ENSIPUG00000013652	pop4	94	59.903	ENSVVUG00000016876	-	72	59.903	Vulpes_vulpes
ENSIPUG00000013652	pop4	98	58.333	ENSXETG00000017598	pop4	98	58.333	Xenopus_tropicalis
ENSIPUG00000013652	pop4	99	60.090	ENSXCOG00000017695	pop4	93	60.090	Xiphophorus_couchianus
ENSIPUG00000013652	pop4	99	60.090	ENSXMAG00000013862	pop4	93	60.090	Xiphophorus_maculatus