EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000013740 (Gene tree)
Gene ID: 108260590
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 15707 bases
Position: chr2:18929957-18945663
Accession: 108260590
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000020284	zf-C2H2	PF00096.26	1.4e-16	1	4
ENSIPUP00000020284	zf-C2H2	PF00096.26	1.4e-16	2	4
ENSIPUP00000020284	zf-C2H2	PF00096.26	1.4e-16	3	4
ENSIPUP00000020284	zf-C2H2	PF00096.26	1.4e-16	4	4
ENSIPUP00000020265	zf-C2H2	PF00096.26	3.3e-16	1	4
ENSIPUP00000020265	zf-C2H2	PF00096.26	3.3e-16	2	4
ENSIPUP00000020265	zf-C2H2	PF00096.26	3.3e-16	3	4
ENSIPUP00000020265	zf-C2H2	PF00096.26	3.3e-16	4	4
ENSIPUP00000020310	zf-C2H2	PF00096.26	5.6e-16	1	4
ENSIPUP00000020310	zf-C2H2	PF00096.26	5.6e-16	2	4
ENSIPUP00000020310	zf-C2H2	PF00096.26	5.6e-16	3	4
ENSIPUP00000020310	zf-C2H2	PF00096.26	5.6e-16	4	4
ENSIPUP00000020284	zf-met	PF12874.7	0.00027	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000021137	-	5267	XM_017460980	ENSIPUP00000020265	685 (aa)	XP_017316469	A0A2D0QDU1
ENSIPUT00000021184	-	2217	-	ENSIPUP00000020310	738 (aa)	-	-
ENSIPUT00000021157	-	4894	XM_017460989	ENSIPUP00000020284	597 (aa)	XP_017316478	A0A2D0QCR6

Gene Model

Click here to download ENSIPUG00000013740's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013740's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000013740	prdm1b	51	43.939	ENSIPUG00000006916	-	97	43.939

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013740	prdm1b	58	56.267	ENSAPOG00000022084	prdm1b	82	56.995	Acanthochromis_polyacanthus
ENSIPUG00000013740	prdm1b	60	54.118	ENSACIG00000009747	-	52	54.118	Amphilophus_citrinellus
ENSIPUG00000013740	prdm1b	91	52.921	ENSACIG00000014426	prdm1b	90	52.921	Amphilophus_citrinellus
ENSIPUG00000013740	prdm1b	92	52.522	ENSAOCG00000002230	prdm1b	89	73.750	Amphiprion_ocellaris
ENSIPUG00000013740	prdm1b	79	72.000	ENSAPEG00000019826	prdm1b	94	73.750	Amphiprion_percula
ENSIPUG00000013740	prdm1b	92	54.146	ENSATEG00000006924	prdm1b	86	72.727	Anabas_testudineus
ENSIPUG00000013740	prdm1b	64	56.463	ENSATEG00000021017	prdm1a	60	56.757	Anabas_testudineus
ENSIPUG00000013740	prdm1b	92	54.623	ENSACLG00000005487	prdm1b	86	72.222	Astatotilapia_calliptera
ENSIPUG00000013740	prdm1b	63	56.098	ENSCSEG00000009707	prdm1a	57	59.375	Cynoglossus_semilaevis
ENSIPUG00000013740	prdm1b	78	74.850	ENSCVAG00000016746	prdm1b	87	74.405	Cyprinodon_variegatus
ENSIPUG00000013740	prdm1b	63	55.172	ENSCVAG00000019081	prdm1a	59	54.483	Cyprinodon_variegatus
ENSIPUG00000013740	prdm1b	92	54.701	ENSFHEG00000019848	prdm1b	86	77.922	Fundulus_heteroclitus
ENSIPUG00000013740	prdm1b	93	54.720	ENSGAFG00000016191	prdm1b	89	54.110	Gambusia_affinis
ENSIPUG00000013740	prdm1b	94	52.192	ENSGACG00000002716	prdm1b	98	52.684	Gasterosteus_aculeatus
ENSIPUG00000013740	prdm1b	72	75.581	ENSHBUG00000001475	prdm1b	91	75.581	Haplochromis_burtoni
ENSIPUG00000013740	prdm1b	73	76.316	ENSHCOG00000003617	prdm1b	93	76.316	Hippocampus_comes
ENSIPUG00000013740	prdm1b	92	51.130	ENSKMAG00000011218	prdm1b	82	75.000	Kryptolebias_marmoratus
ENSIPUG00000013740	prdm1b	63	56.548	ENSKMAG00000017597	prdm1a	93	41.949	Kryptolebias_marmoratus
ENSIPUG00000013740	prdm1b	94	56.452	ENSLBEG00000020955	prdm1b	90	56.452	Labrus_bergylta
ENSIPUG00000013740	prdm1b	82	67.857	ENSLOCG00000004978	prdm1b	97	47.526	Lepisosteus_oculatus
ENSIPUG00000013740	prdm1b	90	54.720	ENSMZEG00005026361	prdm1b	84	72.222	Maylandia_zebra
ENSIPUG00000013740	prdm1b	91	54.422	ENSMMOG00000013458	prdm1b	91	54.252	Mola_mola
ENSIPUG00000013740	prdm1b	91	53.333	ENSMALG00000011410	prdm1b	90	68.539	Monopterus_albus
ENSIPUG00000013740	prdm1b	60	56.641	ENSMALG00000000462	-	53	56.202	Monopterus_albus
ENSIPUG00000013740	prdm1b	53	61.429	ENSONIG00000014709	-	52	63.000	Oreochromis_niloticus
ENSIPUG00000013740	prdm1b	93	54.495	ENSONIG00000013583	prdm1b	98	54.369	Oreochromis_niloticus
ENSIPUG00000013740	prdm1b	98	48.065	ENSORLG00000010025	prdm1b	99	48.095	Oryzias_latipes
ENSIPUG00000013740	prdm1b	91	50.260	ENSORLG00015009022	prdm1b	90	50.087	Oryzias_latipes_hsok
ENSIPUG00000013740	prdm1b	76	72.222	ENSPKIG00000022335	prdm1b	85	72.222	Paramormyrops_kingsleyae
ENSIPUG00000013740	prdm1b	74	73.810	ENSPFOG00000003103	prdm1b	83	73.810	Poecilia_formosa
ENSIPUG00000013740	prdm1b	91	55.308	ENSPLAG00000018491	prdm1b	88	55.385	Poecilia_latipinna
ENSIPUG00000013740	prdm1b	92	55.366	ENSPMEG00000007869	prdm1b	87	65.217	Poecilia_mexicana
ENSIPUG00000013740	prdm1b	94	55.233	ENSPREG00000011327	prdm1b	88	55.897	Poecilia_reticulata
ENSIPUG00000013740	prdm1b	94	41.319	ENSPVAG00000011732	PRDM1	92	40.242	Pteropus_vampyrus
ENSIPUG00000013740	prdm1b	98	35.046	ENSPNAG00000028442	prdm1a	70	51.765	Pygocentrus_nattereri
ENSIPUG00000013740	prdm1b	94	54.766	ENSSFOG00015021896	prdm1b	85	68.235	Scleropages_formosus
ENSIPUG00000013740	prdm1b	94	56.745	ENSSMAG00000020467	prdm1b	87	70.930	Scophthalmus_maximus
ENSIPUG00000013740	prdm1b	92	54.530	ENSSDUG00000020610	prdm1b	85	72.727	Seriola_dumerili
ENSIPUG00000013740	prdm1b	93	39.439	ENSSDUG00000000524	-	88	39.439	Seriola_dumerili
ENSIPUG00000013740	prdm1b	80	55.263	ENSSLDG00000001957	-	88	39.060	Seriola_lalandi_dorsalis
ENSIPUG00000013740	prdm1b	82	72.674	ENSSLDG00000021973	prdm1b	87	72.674	Seriola_lalandi_dorsalis
ENSIPUG00000013740	prdm1b	79	53.416	ENSSPAG00000009830	-	65	53.416	Stegastes_partitus
ENSIPUG00000013740	prdm1b	70	77.922	ENSSPAG00000000803	prdm1b	88	77.922	Stegastes_partitus
ENSIPUG00000013740	prdm1b	94	56.891	ENSXCOG00000018920	prdm1b	92	64.677	Xiphophorus_couchianus
ENSIPUG00000013740	prdm1b	93	56.000	ENSXMAG00000016765	prdm1b	90	57.143	Xiphophorus_maculatus