EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000013748 (Gene tree)
Gene ID: -
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 4442 bases
Position: chr26:8759683-8764124
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000020248	RNA_ligase	PF09414.10	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000021119	-	2730	-	ENSIPUP00000020248	909 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000013748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000013748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000013748	lig4	99	65.313	ENSG00000174405	LIG4	100	65.799	Homo_sapiens
ENSIPUG00000013748	lig4	100	79.208	ENSAPOG00000000866	lig4	100	79.208	Acanthochromis_polyacanthus
ENSIPUG00000013748	lig4	99	64.738	ENSAMEG00000019685	LIG4	99	64.738	Ailuropoda_melanoleuca
ENSIPUG00000013748	lig4	100	79.451	ENSACIG00000018309	lig4	100	79.451	Amphilophus_citrinellus
ENSIPUG00000013748	lig4	100	79.208	ENSAOCG00000011768	lig4	100	79.208	Amphiprion_ocellaris
ENSIPUG00000013748	lig4	100	79.208	ENSAPEG00000017815	lig4	100	79.208	Amphiprion_percula
ENSIPUG00000013748	lig4	100	79.121	ENSATEG00000005583	lig4	100	79.121	Anabas_testudineus
ENSIPUG00000013748	lig4	96	67.617	ENSAPLG00000001673	LIG4	99	67.617	Anas_platyrhynchos
ENSIPUG00000013748	lig4	99	66.777	ENSACAG00000014566	LIG4	99	66.777	Anolis_carolinensis
ENSIPUG00000013748	lig4	99	65.093	ENSANAG00000012446	LIG4	99	65.093	Aotus_nancymaae
ENSIPUG00000013748	lig4	100	78.242	ENSACLG00000027051	lig4	100	78.242	Astatotilapia_calliptera
ENSIPUG00000013748	lig4	99	83.956	ENSAMXG00000008192	lig4	94	83.956	Astyanax_mexicanus
ENSIPUG00000013748	lig4	99	64.874	ENSBTAG00000015868	LIG4	99	64.874	Bos_taurus
ENSIPUG00000013748	lig4	99	64.764	ENSCJAG00000014689	LIG4	99	64.764	Callithrix_jacchus
ENSIPUG00000013748	lig4	99	65.093	ENSCAFG00000006031	LIG4	99	65.093	Canis_familiaris
ENSIPUG00000013748	lig4	99	65.093	ENSCAFG00020021230	LIG4	99	65.093	Canis_lupus_dingo
ENSIPUG00000013748	lig4	99	64.874	ENSCHIG00000001019	LIG4	99	64.874	Capra_hircus
ENSIPUG00000013748	lig4	99	64.823	ENSCAPG00000006284	LIG4	99	64.823	Cavia_aperea
ENSIPUG00000013748	lig4	99	64.615	ENSCPOG00000014266	LIG4	99	64.615	Cavia_porcellus
ENSIPUG00000013748	lig4	99	64.764	ENSCCAG00000019971	LIG4	99	64.764	Cebus_capucinus
ENSIPUG00000013748	lig4	100	64.995	ENSCATG00000021075	LIG4	100	64.995	Cercocebus_atys
ENSIPUG00000013748	lig4	98	65.338	ENSCLAG00000003376	LIG4	99	65.338	Chinchilla_lanigera
ENSIPUG00000013748	lig4	100	64.885	ENSCSAG00000000211	LIG4	100	64.885	Chlorocebus_sabaeus
ENSIPUG00000013748	lig4	99	68.031	ENSCPBG00000023291	LIG4	100	67.760	Chrysemys_picta_bellii
ENSIPUG00000013748	lig4	69	45.669	ENSCING00000009536	-	97	45.669	Ciona_intestinalis
ENSIPUG00000013748	lig4	83	44.737	ENSCSAVG00000010336	-	98	44.737	Ciona_savignyi
ENSIPUG00000013748	lig4	100	64.449	ENSCANG00000005805	LIG4	100	64.449	Colobus_angolensis_palliatus
ENSIPUG00000013748	lig4	98	65.116	ENSCGRG00001012072	Lig4	99	65.116	Cricetulus_griseus_chok1gshd
ENSIPUG00000013748	lig4	98	65.116	ENSCGRG00000013417	Lig4	99	65.116	Cricetulus_griseus_crigri
ENSIPUG00000013748	lig4	97	76.550	ENSCSEG00000013905	lig4	96	76.550	Cynoglossus_semilaevis
ENSIPUG00000013748	lig4	100	78.462	ENSCVAG00000007896	lig4	100	78.462	Cyprinodon_variegatus
ENSIPUG00000013748	lig4	100	80.858	ENSDARG00000060620	lig4	100	80.858	Danio_rerio
ENSIPUG00000013748	lig4	99	64.764	ENSDNOG00000000513	LIG4	99	64.764	Dasypus_novemcinctus
ENSIPUG00000013748	lig4	99	65.093	ENSDORG00000027303	Lig4	99	65.093	Dipodomys_ordii
ENSIPUG00000013748	lig4	91	31.348	FBgn0030506	Lig4	95	31.348	Drosophila_melanogaster
ENSIPUG00000013748	lig4	98	63.234	ENSETEG00000015563	LIG4	100	63.677	Echinops_telfairi
ENSIPUG00000013748	lig4	98	44.597	ENSEBUG00000014243	lig4	98	44.597	Eptatretus_burgeri
ENSIPUG00000013748	lig4	99	65.203	ENSEASG00005022073	LIG4	99	65.203	Equus_asinus_asinus
ENSIPUG00000013748	lig4	99	64.874	ENSECAG00000003257	LIG4	99	64.874	Equus_caballus
ENSIPUG00000013748	lig4	99	78.571	ENSELUG00000006787	lig4	99	78.571	Esox_lucius
ENSIPUG00000013748	lig4	98	64.856	ENSFCAG00000031985	LIG4	99	64.856	Felis_catus
ENSIPUG00000013748	lig4	89	69.183	ENSFALG00000004214	LIG4	98	69.183	Ficedula_albicollis
ENSIPUG00000013748	lig4	99	64.725	ENSFDAG00000008973	LIG4	99	64.725	Fukomys_damarensis
ENSIPUG00000013748	lig4	100	78.375	ENSFHEG00000007398	lig4	91	78.375	Fundulus_heteroclitus
ENSIPUG00000013748	lig4	85	74.031	ENSGMOG00000012843	lig4	99	74.031	Gadus_morhua
ENSIPUG00000013748	lig4	100	66.046	ENSGALG00000016854	LIG4	100	66.046	Gallus_gallus
ENSIPUG00000013748	lig4	98	78.212	ENSGAFG00000019779	lig4	96	77.656	Gambusia_affinis
ENSIPUG00000013748	lig4	99	75.220	ENSGACG00000014135	lig4	99	75.551	Gasterosteus_aculeatus
ENSIPUG00000013748	lig4	99	65.093	ENSGGOG00000027771	LIG4	99	65.093	Gorilla_gorilla
ENSIPUG00000013748	lig4	100	78.022	ENSHBUG00000006245	lig4	100	78.022	Haplochromis_burtoni
ENSIPUG00000013748	lig4	99	64.615	ENSHGLG00000000718	LIG4	99	64.615	Heterocephalus_glaber_female
ENSIPUG00000013748	lig4	99	64.615	ENSHGLG00100003265	LIG4	99	64.615	Heterocephalus_glaber_male
ENSIPUG00000013748	lig4	100	74.781	ENSHCOG00000012010	lig4	100	74.781	Hippocampus_comes
ENSIPUG00000013748	lig4	99	64.301	ENSSTOG00000024303	LIG4	99	64.301	Ictidomys_tridecemlineatus
ENSIPUG00000013748	lig4	99	64.026	ENSJJAG00000006750	Lig4	99	63.816	Jaculus_jaculus
ENSIPUG00000013748	lig4	100	76.348	ENSKMAG00000001149	lig4	100	76.348	Kryptolebias_marmoratus
ENSIPUG00000013748	lig4	91	77.751	ENSLBEG00000014578	lig4	100	77.751	Labrus_bergylta
ENSIPUG00000013748	lig4	100	67.325	ENSLACG00000003282	LIG4	100	67.325	Latimeria_chalumnae
ENSIPUG00000013748	lig4	100	72.946	ENSLOCG00000008901	lig4	99	72.946	Lepisosteus_oculatus
ENSIPUG00000013748	lig4	99	63.636	ENSLAFG00000031152	LIG4	99	63.636	Loxodonta_africana
ENSIPUG00000013748	lig4	100	64.885	ENSMFAG00000037235	LIG4	100	64.885	Macaca_fascicularis
ENSIPUG00000013748	lig4	100	64.776	ENSMMUG00000008874	LIG4	100	64.776	Macaca_mulatta
ENSIPUG00000013748	lig4	100	64.885	ENSMNEG00000023575	LIG4	100	64.885	Macaca_nemestrina
ENSIPUG00000013748	lig4	100	64.885	ENSMLEG00000026720	LIG4	100	64.885	Mandrillus_leucophaeus
ENSIPUG00000013748	lig4	100	79.451	ENSMAMG00000008472	lig4	99	79.451	Mastacembelus_armatus
ENSIPUG00000013748	lig4	100	78.242	ENSMZEG00005001855	lig4	100	78.242	Maylandia_zebra
ENSIPUG00000013748	lig4	100	66.375	ENSMGAG00000015532	LIG4	100	66.375	Meleagris_gallopavo
ENSIPUG00000013748	lig4	99	62.898	ENSMOCG00000019000	Lig4	99	62.898	Microtus_ochrogaster
ENSIPUG00000013748	lig4	100	76.923	ENSMMOG00000004390	lig4	100	76.923	Mola_mola
ENSIPUG00000013748	lig4	98	66.113	ENSMODG00000025064	LIG4	99	66.261	Monodelphis_domestica
ENSIPUG00000013748	lig4	100	78.352	ENSMALG00000008555	lig4	100	78.352	Monopterus_albus
ENSIPUG00000013748	lig4	99	65.385	MGP_CAROLIEiJ_G0030809	Lig4	99	65.385	Mus_caroli
ENSIPUG00000013748	lig4	99	64.945	ENSMUSG00000049717	Lig4	99	64.945	Mus_musculus
ENSIPUG00000013748	lig4	99	65.275	MGP_PahariEiJ_G0021270	Lig4	99	65.275	Mus_pahari
ENSIPUG00000013748	lig4	99	65.165	MGP_SPRETEiJ_G0031917	Lig4	99	65.165	Mus_spretus
ENSIPUG00000013748	lig4	99	64.286	ENSMPUG00000018675	LIG4	99	64.286	Mustela_putorius_furo
ENSIPUG00000013748	lig4	99	64.984	ENSMLUG00000001267	LIG4	99	64.984	Myotis_lucifugus
ENSIPUG00000013748	lig4	98	65.078	ENSNGAG00000013258	Lig4	99	65.078	Nannospalax_galili
ENSIPUG00000013748	lig4	100	77.912	ENSNBRG00000021252	lig4	100	77.912	Neolamprologus_brichardi
ENSIPUG00000013748	lig4	99	64.654	ENSNLEG00000007888	LIG4	99	64.654	Nomascus_leucogenys
ENSIPUG00000013748	lig4	99	63.996	ENSOPRG00000005765	LIG4	99	63.996	Ochotona_princeps
ENSIPUG00000013748	lig4	99	64.615	ENSODEG00000019683	LIG4	99	64.615	Octodon_degus
ENSIPUG00000013748	lig4	100	78.791	ENSONIG00000011969	lig4	99	78.791	Oreochromis_niloticus
ENSIPUG00000013748	lig4	99	64.835	ENSOCUG00000015734	LIG4	99	64.835	Oryctolagus_cuniculus
ENSIPUG00000013748	lig4	100	75.904	ENSORLG00000004041	lig4	100	75.904	Oryzias_latipes
ENSIPUG00000013748	lig4	100	76.232	ENSORLG00020019607	lig4	100	76.232	Oryzias_latipes_hni
ENSIPUG00000013748	lig4	100	76.013	ENSORLG00015017754	lig4	100	76.013	Oryzias_latipes_hsok
ENSIPUG00000013748	lig4	75	79.622	ENSOMEG00000003459	lig4	99	79.622	Oryzias_melastigma
ENSIPUG00000013748	lig4	99	64.764	ENSOGAG00000032120	LIG4	99	64.764	Otolemur_garnettii
ENSIPUG00000013748	lig4	82	69.220	ENSOARG00000005590	LIG4	98	69.220	Ovis_aries
ENSIPUG00000013748	lig4	99	64.984	ENSPPAG00000032998	LIG4	99	64.984	Pan_paniscus
ENSIPUG00000013748	lig4	98	65.078	ENSPPRG00000017804	LIG4	99	65.078	Panthera_pardus
ENSIPUG00000013748	lig4	98	64.967	ENSPTIG00000010051	LIG4	99	64.967	Panthera_tigris_altaica
ENSIPUG00000013748	lig4	99	65.093	ENSPTRG00000006025	LIG4	99	65.093	Pan_troglodytes
ENSIPUG00000013748	lig4	100	65.104	ENSPANG00000007562	LIG4	100	65.104	Papio_anubis
ENSIPUG00000013748	lig4	100	77.228	ENSPKIG00000011645	lig4	99	77.228	Paramormyrops_kingsleyae
ENSIPUG00000013748	lig4	100	68.127	ENSPSIG00000001504	LIG4	100	68.127	Pelodiscus_sinensis
ENSIPUG00000013748	lig4	98	74.020	ENSPMGG00000013486	lig4	99	73.562	Periophthalmus_magnuspinnatus
ENSIPUG00000013748	lig4	98	64.673	ENSPEMG00000000076	Lig4	99	64.673	Peromyscus_maniculatus_bairdii
ENSIPUG00000013748	lig4	99	65.498	ENSPCIG00000021882	LIG4	99	65.498	Phascolarctos_cinereus
ENSIPUG00000013748	lig4	98	79.083	ENSPFOG00000000797	lig4	100	78.509	Poecilia_formosa
ENSIPUG00000013748	lig4	98	78.971	ENSPLAG00000001196	lig4	100	78.399	Poecilia_latipinna
ENSIPUG00000013748	lig4	98	79.083	ENSPMEG00000021353	lig4	100	78.618	Poecilia_mexicana
ENSIPUG00000013748	lig4	98	78.523	ENSPREG00000007323	lig4	100	78.070	Poecilia_reticulata
ENSIPUG00000013748	lig4	99	65.093	ENSPPYG00000005540	LIG4	99	65.093	Pongo_abelii
ENSIPUG00000013748	lig4	100	64.558	ENSPVAG00000016403	LIG4	100	64.558	Pteropus_vampyrus
ENSIPUG00000013748	lig4	100	78.132	ENSPNYG00000009660	lig4	100	78.132	Pundamilia_nyererei
ENSIPUG00000013748	lig4	99	87.068	ENSPNAG00000028069	LIG4	99	87.068	Pygocentrus_nattereri
ENSIPUG00000013748	lig4	99	87.068	ENSPNAG00000028056	lig4	99	87.068	Pygocentrus_nattereri
ENSIPUG00000013748	lig4	99	65.165	ENSRNOG00000014605	Lig4	99	65.165	Rattus_norvegicus
ENSIPUG00000013748	lig4	100	63.686	ENSRBIG00000039962	LIG4	100	63.686	Rhinopithecus_bieti
ENSIPUG00000013748	lig4	100	64.558	ENSRROG00000006040	LIG4	100	64.558	Rhinopithecus_roxellana
ENSIPUG00000013748	lig4	99	64.435	ENSSBOG00000019029	LIG4	99	64.435	Saimiri_boliviensis_boliviensis
ENSIPUG00000013748	lig4	99	62.939	ENSSHAG00000009525	LIG4	99	63.089	Sarcophilus_harrisii
ENSIPUG00000013748	lig4	100	77.668	ENSSFOG00015012835	lig4	100	77.668	Scleropages_formosus
ENSIPUG00000013748	lig4	100	74.367	ENSSMAG00000011267	lig4	100	74.367	Scophthalmus_maximus
ENSIPUG00000013748	lig4	100	78.228	ENSSDUG00000010343	lig4	100	78.228	Seriola_dumerili
ENSIPUG00000013748	lig4	100	76.696	ENSSLDG00000003239	lig4	100	76.696	Seriola_lalandi_dorsalis
ENSIPUG00000013748	lig4	100	64.348	ENSSARG00000006573	LIG4	100	64.348	Sorex_araneus
ENSIPUG00000013748	lig4	92	68.452	ENSSPUG00000002444	LIG4	100	68.452	Sphenodon_punctatus
ENSIPUG00000013748	lig4	100	78.022	ENSSPAG00000001609	lig4	100	78.022	Stegastes_partitus
ENSIPUG00000013748	lig4	99	64.906	ENSSSCG00000009540	LIG4	99	65.055	Sus_scrofa
ENSIPUG00000013748	lig4	99	66.925	ENSTGUG00000010795	LIG4	99	66.925	Taeniopygia_guttata
ENSIPUG00000013748	lig4	100	78.242	ENSTRUG00000009984	lig4	100	78.242	Takifugu_rubripes
ENSIPUG00000013748	lig4	100	76.348	ENSTNIG00000010348	lig4	100	76.568	Tetraodon_nigroviridis
ENSIPUG00000013748	lig4	99	64.945	ENSTBEG00000017741	LIG4	99	64.945	Tupaia_belangeri
ENSIPUG00000013748	lig4	99	64.984	ENSTTRG00000012660	LIG4	99	64.984	Tursiops_truncatus
ENSIPUG00000013748	lig4	99	64.874	ENSUAMG00000003773	LIG4	99	64.874	Ursus_americanus
ENSIPUG00000013748	lig4	100	66.265	ENSXETG00000002654	lig4	100	66.265	Xenopus_tropicalis
ENSIPUG00000013748	lig4	98	78.412	ENSXCOG00000017401	lig4	99	78.184	Xiphophorus_couchianus
ENSIPUG00000013748	lig4	98	78.747	ENSXMAG00000015142	lig4	99	78.516	Xiphophorus_maculatus