EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000014721 (Gene tree)
Gene ID: 108280399
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 99008 bases
Position: chr20:11197192-11296199
Accession: 108280399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000021718	Npa1	PF11707.8	1.2e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000022653	-	11420	XM_017495323	ENSIPUP00000021718	2235 (aa)	XP_017350812	A0A2D0T857

Gene Model

Click here to download ENSIPUG00000014721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000014721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000014721	urb1	99	41.003	ENSG00000142207	URB1	99	40.939	Homo_sapiens
ENSIPUG00000014721	urb1	97	61.413	ENSAPOG00000020308	urb1	99	61.413	Acanthochromis_polyacanthus
ENSIPUG00000014721	urb1	99	40.555	ENSAMEG00000011998	URB1	99	40.731	Ailuropoda_melanoleuca
ENSIPUG00000014721	urb1	95	47.116	ENSACIG00000003248	urb1	97	46.845	Amphilophus_citrinellus
ENSIPUG00000014721	urb1	99	44.969	ENSAOCG00000010364	urb1	99	45.587	Amphiprion_ocellaris
ENSIPUG00000014721	urb1	99	47.238	ENSAPEG00000010758	urb1	99	47.238	Amphiprion_percula
ENSIPUG00000014721	urb1	99	48.557	ENSATEG00000011790	urb1	99	48.384	Anabas_testudineus
ENSIPUG00000014721	urb1	97	42.171	ENSAPLG00000012791	URB1	99	41.805	Anas_platyrhynchos
ENSIPUG00000014721	urb1	99	41.223	ENSACAG00000002817	URB1	98	41.138	Anolis_carolinensis
ENSIPUG00000014721	urb1	99	40.877	ENSANAG00000024617	URB1	99	40.921	Aotus_nancymaae
ENSIPUG00000014721	urb1	99	49.210	ENSACLG00000024865	urb1	99	49.079	Astatotilapia_calliptera
ENSIPUG00000014721	urb1	100	58.824	ENSAMXG00000012306	urb1	99	58.956	Astyanax_mexicanus
ENSIPUG00000014721	urb1	99	39.073	ENSBTAG00000012412	URB1	99	39.256	Bos_taurus
ENSIPUG00000014721	urb1	99	40.736	ENSCJAG00000009118	URB1	99	40.780	Callithrix_jacchus
ENSIPUG00000014721	urb1	99	39.702	ENSCAFG00000008892	URB1	99	39.702	Canis_familiaris
ENSIPUG00000014721	urb1	99	39.121	ENSCAFG00020025994	-	99	39.121	Canis_lupus_dingo
ENSIPUG00000014721	urb1	99	39.692	ENSCAFG00020025987	-	99	39.692	Canis_lupus_dingo
ENSIPUG00000014721	urb1	99	39.121	ENSCHIG00000015645	URB1	99	39.121	Capra_hircus
ENSIPUG00000014721	urb1	99	40.361	ENSTSYG00000013286	URB1	99	40.237	Carlito_syrichta
ENSIPUG00000014721	urb1	98	39.700	ENSCAPG00000015589	URB1	99	39.832	Cavia_aperea
ENSIPUG00000014721	urb1	99	40.682	ENSCPOG00000006748	URB1	99	40.682	Cavia_porcellus
ENSIPUG00000014721	urb1	99	40.491	ENSCCAG00000021299	URB1	99	40.535	Cebus_capucinus
ENSIPUG00000014721	urb1	99	41.184	ENSCATG00000042630	URB1	99	41.140	Cercocebus_atys
ENSIPUG00000014721	urb1	99	40.807	ENSCLAG00000005262	URB1	99	41.127	Chinchilla_lanigera
ENSIPUG00000014721	urb1	99	40.324	ENSCSAG00000009584	URB1	99	40.280	Chlorocebus_sabaeus
ENSIPUG00000014721	urb1	99	42.158	ENSCPBG00000006454	URB1	99	42.190	Chrysemys_picta_bellii
ENSIPUG00000014721	urb1	99	40.905	ENSCANG00000031088	URB1	99	40.869	Colobus_angolensis_palliatus
ENSIPUG00000014721	urb1	99	40.473	ENSCGRG00001010616	Urb1	99	40.330	Cricetulus_griseus_chok1gshd
ENSIPUG00000014721	urb1	98	40.407	ENSCGRG00000015840	Urb1	99	40.408	Cricetulus_griseus_crigri
ENSIPUG00000014721	urb1	97	56.284	ENSCSEG00000012616	urb1	99	56.284	Cynoglossus_semilaevis
ENSIPUG00000014721	urb1	93	51.868	ENSCVAG00000009076	urb1	99	54.535	Cyprinodon_variegatus
ENSIPUG00000014721	urb1	99	54.742	ENSDARG00000060308	urb1	99	54.830	Danio_rerio
ENSIPUG00000014721	urb1	85	43.799	ENSDNOG00000015586	URB1	99	43.481	Dasypus_novemcinctus
ENSIPUG00000014721	urb1	99	39.938	ENSDORG00000006735	Urb1	99	39.833	Dipodomys_ordii
ENSIPUG00000014721	urb1	91	51.326	ENSETEG00000009080	URB1	91	51.326	Echinops_telfairi
ENSIPUG00000014721	urb1	99	39.303	ENSEASG00005007711	URB1	99	39.127	Equus_asinus_asinus
ENSIPUG00000014721	urb1	94	48.506	ENSECAG00000013206	URB1	97	48.506	Equus_caballus
ENSIPUG00000014721	urb1	97	60.000	ENSELUG00000020516	urb1	99	60.000	Esox_lucius
ENSIPUG00000014721	urb1	99	40.617	ENSFCAG00000002177	URB1	99	40.606	Felis_catus
ENSIPUG00000014721	urb1	98	38.238	ENSFALG00000004636	URB1	99	38.384	Ficedula_albicollis
ENSIPUG00000014721	urb1	99	40.703	ENSFDAG00000007288	URB1	94	40.419	Fukomys_damarensis
ENSIPUG00000014721	urb1	98	46.961	ENSFHEG00000000202	urb1	99	46.961	Fundulus_heteroclitus
ENSIPUG00000014721	urb1	93	46.831	ENSGMOG00000001838	urb1	94	46.919	Gadus_morhua
ENSIPUG00000014721	urb1	99	41.253	ENSGALG00000015887	URB1	99	41.384	Gallus_gallus
ENSIPUG00000014721	urb1	99	47.661	ENSGAFG00000020694	urb1	99	47.594	Gambusia_affinis
ENSIPUG00000014721	urb1	99	48.944	ENSGACG00000011703	urb1	99	48.855	Gasterosteus_aculeatus
ENSIPUG00000014721	urb1	99	41.892	ENSGAGG00000022544	URB1	99	41.935	Gopherus_agassizii
ENSIPUG00000014721	urb1	99	41.200	ENSGGOG00000000285	URB1	99	41.112	Gorilla_gorilla
ENSIPUG00000014721	urb1	99	49.233	ENSHBUG00000001904	urb1	99	49.146	Haplochromis_burtoni
ENSIPUG00000014721	urb1	99	39.974	ENSHGLG00000004907	URB1	99	39.870	Heterocephalus_glaber_female
ENSIPUG00000014721	urb1	99	40.289	ENSHGLG00100010749	URB1	99	40.184	Heterocephalus_glaber_male
ENSIPUG00000014721	urb1	73	50.977	ENSHCOG00000018683	urb1	98	51.367	Hippocampus_comes
ENSIPUG00000014721	urb1	99	40.335	ENSSTOG00000004539	URB1	99	40.281	Ictidomys_tridecemlineatus
ENSIPUG00000014721	urb1	99	44.788	ENSKMAG00000006001	urb1	99	48.322	Kryptolebias_marmoratus
ENSIPUG00000014721	urb1	97	45.487	ENSLBEG00000027208	urb1	99	45.217	Labrus_bergylta
ENSIPUG00000014721	urb1	99	40.557	ENSLACG00000017059	URB1	100	40.317	Latimeria_chalumnae
ENSIPUG00000014721	urb1	99	46.355	ENSLOCG00000009190	urb1	99	46.355	Lepisosteus_oculatus
ENSIPUG00000014721	urb1	99	41.097	ENSLAFG00000010407	URB1	99	40.923	Loxodonta_africana
ENSIPUG00000014721	urb1	99	40.895	ENSMFAG00000034391	URB1	96	40.807	Macaca_fascicularis
ENSIPUG00000014721	urb1	99	40.939	ENSMMUG00000010295	URB1	99	40.851	Macaca_mulatta
ENSIPUG00000014721	urb1	99	40.412	ENSMNEG00000032981	URB1	99	40.325	Macaca_nemestrina
ENSIPUG00000014721	urb1	99	41.027	ENSMLEG00000041435	URB1	99	40.983	Mandrillus_leucophaeus
ENSIPUG00000014721	urb1	99	47.103	ENSMAMG00000011238	urb1	99	46.992	Mastacembelus_armatus
ENSIPUG00000014721	urb1	97	61.413	ENSMZEG00005011862	urb1	99	61.413	Maylandia_zebra
ENSIPUG00000014721	urb1	98	41.630	ENSMGAG00000014512	URB1	99	41.268	Meleagris_gallopavo
ENSIPUG00000014721	urb1	92	46.834	ENSMAUG00000010516	Urb1	99	47.605	Mesocricetus_auratus
ENSIPUG00000014721	urb1	99	40.897	ENSMICG00000016424	URB1	99	40.679	Microcebus_murinus
ENSIPUG00000014721	urb1	99	39.390	ENSMOCG00000012613	Urb1	99	39.440	Microtus_ochrogaster
ENSIPUG00000014721	urb1	98	40.853	ENSMODG00000021076	URB1	98	40.764	Monodelphis_domestica
ENSIPUG00000014721	urb1	96	55.713	ENSMALG00000017411	urb1	99	55.713	Monopterus_albus
ENSIPUG00000014721	urb1	99	40.000	MGP_CAROLIEiJ_G0020948	Urb1	99	40.000	Mus_caroli
ENSIPUG00000014721	urb1	99	39.601	ENSMUSG00000039929	Urb1	99	39.643	Mus_musculus
ENSIPUG00000014721	urb1	99	39.965	MGP_PahariEiJ_G0016653	Urb1	99	39.965	Mus_pahari
ENSIPUG00000014721	urb1	99	39.505	MGP_SPRETEiJ_G0021854	Urb1	99	39.547	Mus_spretus
ENSIPUG00000014721	urb1	99	40.229	ENSMPUG00000001123	URB1	99	40.229	Mustela_putorius_furo
ENSIPUG00000014721	urb1	99	39.671	ENSNGAG00000001905	Urb1	99	39.636	Nannospalax_galili
ENSIPUG00000014721	urb1	82	46.892	ENSNBRG00000001049	urb1	99	46.617	Neolamprologus_brichardi
ENSIPUG00000014721	urb1	99	40.035	ENSNLEG00000026872	URB1	99	40.026	Nomascus_leucogenys
ENSIPUG00000014721	urb1	92	47.327	ENSMEUG00000010828	URB1	94	38.817	Notamacropus_eugenii
ENSIPUG00000014721	urb1	99	38.729	ENSOPRG00000013482	URB1	99	38.455	Ochotona_princeps
ENSIPUG00000014721	urb1	99	40.404	ENSODEG00000002587	URB1	99	40.588	Octodon_degus
ENSIPUG00000014721	urb1	99	49.388	ENSONIG00000005599	urb1	99	49.213	Oreochromis_niloticus
ENSIPUG00000014721	urb1	99	40.611	ENSOCUG00000009381	URB1	99	40.804	Oryctolagus_cuniculus
ENSIPUG00000014721	urb1	99	47.299	ENSORLG00000003429	urb1	99	47.299	Oryzias_latipes
ENSIPUG00000014721	urb1	99	47.149	ENSORLG00020013785	urb1	99	47.018	Oryzias_latipes_hni
ENSIPUG00000014721	urb1	98	59.444	ENSORLG00015019421	urb1	99	59.444	Oryzias_latipes_hsok
ENSIPUG00000014721	urb1	78	50.415	ENSOMEG00000002094	urb1	99	50.415	Oryzias_melastigma
ENSIPUG00000014721	urb1	99	41.143	ENSOGAG00000017140	URB1	99	41.056	Otolemur_garnettii
ENSIPUG00000014721	urb1	95	43.071	ENSOARG00000013679	URB1	98	42.620	Ovis_aries
ENSIPUG00000014721	urb1	99	41.017	ENSPPAG00000003423	URB1	99	40.929	Pan_paniscus
ENSIPUG00000014721	urb1	99	40.606	ENSPPRG00000023131	URB1	99	40.711	Panthera_pardus
ENSIPUG00000014721	urb1	87	41.494	ENSPTIG00000016125	URB1	92	41.393	Panthera_tigris_altaica
ENSIPUG00000014721	urb1	99	40.929	ENSPTRG00000013852	URB1	99	40.841	Pan_troglodytes
ENSIPUG00000014721	urb1	99	40.939	ENSPANG00000021964	URB1	99	40.895	Papio_anubis
ENSIPUG00000014721	urb1	99	48.884	ENSPKIG00000003683	urb1	99	48.884	Paramormyrops_kingsleyae
ENSIPUG00000014721	urb1	99	39.791	ENSPEMG00000021205	Urb1	98	39.834	Peromyscus_maniculatus_bairdii
ENSIPUG00000014721	urb1	80	31.847	ENSPMAG00000009733	URB1	100	32.251	Petromyzon_marinus
ENSIPUG00000014721	urb1	99	41.027	ENSPCIG00000016350	URB1	99	41.190	Phascolarctos_cinereus
ENSIPUG00000014721	urb1	97	47.667	ENSPLAG00000004371	urb1	99	47.667	Poecilia_latipinna
ENSIPUG00000014721	urb1	99	48.070	ENSPMEG00000006634	urb1	99	48.070	Poecilia_mexicana
ENSIPUG00000014721	urb1	99	48.444	ENSPREG00000013453	urb1	99	48.444	Poecilia_reticulata
ENSIPUG00000014721	urb1	99	40.967	ENSPPYG00000011359	URB1	99	40.815	Pongo_abelii
ENSIPUG00000014721	urb1	99	36.989	ENSPCAG00000007430	URB1	96	46.111	Procavia_capensis
ENSIPUG00000014721	urb1	99	40.350	ENSPCOG00000022695	URB1	99	40.613	Propithecus_coquereli
ENSIPUG00000014721	urb1	99	39.188	ENSPVAG00000000889	URB1	99	39.038	Pteropus_vampyrus
ENSIPUG00000014721	urb1	99	48.032	ENSPNYG00000010589	urb1	99	47.924	Pundamilia_nyererei
ENSIPUG00000014721	urb1	100	63.825	ENSPNAG00000019324	urb1	99	63.825	Pygocentrus_nattereri
ENSIPUG00000014721	urb1	99	39.869	ENSRNOG00000002080	Urb1	99	39.781	Rattus_norvegicus
ENSIPUG00000014721	urb1	99	40.849	ENSRBIG00000033122	URB1	99	40.806	Rhinopithecus_bieti
ENSIPUG00000014721	urb1	99	40.903	ENSRROG00000040237	URB1	99	40.859	Rhinopithecus_roxellana
ENSIPUG00000014721	urb1	99	40.201	ENSSBOG00000027672	URB1	99	40.456	Saimiri_boliviensis_boliviensis
ENSIPUG00000014721	urb1	99	40.585	ENSSHAG00000005140	URB1	99	40.542	Sarcophilus_harrisii
ENSIPUG00000014721	urb1	93	50.802	ENSSFOG00015000339	urb1	99	50.685	Scleropages_formosus
ENSIPUG00000014721	urb1	99	48.798	ENSSMAG00000003782	urb1	99	48.972	Scophthalmus_maximus
ENSIPUG00000014721	urb1	99	49.343	ENSSDUG00000012313	urb1	99	49.343	Seriola_dumerili
ENSIPUG00000014721	urb1	99	49.302	ENSSLDG00000023179	urb1	99	49.280	Seriola_lalandi_dorsalis
ENSIPUG00000014721	urb1	99	41.182	ENSSPUG00000012447	URB1	99	41.104	Sphenodon_punctatus
ENSIPUG00000014721	urb1	99	49.079	ENSSPAG00000006325	urb1	99	49.079	Stegastes_partitus
ENSIPUG00000014721	urb1	99	39.248	ENSSSCG00000032024	URB1	99	39.100	Sus_scrofa
ENSIPUG00000014721	urb1	74	43.776	ENSTGUG00000013442	URB1	100	43.538	Taeniopygia_guttata
ENSIPUG00000014721	urb1	99	48.683	ENSTRUG00000009372	urb1	99	48.374	Takifugu_rubripes
ENSIPUG00000014721	urb1	99	47.768	ENSTNIG00000016277	urb1	99	47.413	Tetraodon_nigroviridis
ENSIPUG00000014721	urb1	77	45.087	ENSTBEG00000010044	URB1	73	45.087	Tupaia_belangeri
ENSIPUG00000014721	urb1	88	45.865	ENSTTRG00000007712	URB1	90	45.356	Tursiops_truncatus
ENSIPUG00000014721	urb1	99	40.413	ENSUAMG00000012231	URB1	99	40.589	Ursus_americanus
ENSIPUG00000014721	urb1	82	49.704	ENSUMAG00000017419	URB1	91	49.704	Ursus_maritimus
ENSIPUG00000014721	urb1	63	56.061	ENSVPAG00000001164	URB1	62	56.061	Vicugna_pacos
ENSIPUG00000014721	urb1	99	39.938	ENSVVUG00000000551	URB1	99	39.938	Vulpes_vulpes
ENSIPUG00000014721	urb1	98	41.515	ENSXETG00000009895	urb1	99	41.126	Xenopus_tropicalis
ENSIPUG00000014721	urb1	98	58.696	ENSXCOG00000005500	urb1	99	58.696	Xiphophorus_couchianus
ENSIPUG00000014721	urb1	98	59.783	ENSXMAG00000007253	urb1	99	59.783	Xiphophorus_maculatus