EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000014800 (Gene tree)
Gene ID: 108274312
Gene Symbol: lsm12
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 17279 bases
Position: chr13:23784330-23801608
Accession: 108274312
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000021846	AD	PF09793.9	7.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000022784	-	1868	XM_017484410	ENSIPUP00000021846	196 (aa)	XP_017339899	A0A2D0SAZ2

Gene Model

Click here to download ENSIPUG00000014800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000014800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000014800	lsm12	99	82.474	ENSIPUG00000008936	lsm12a	99	82.474

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000014800	lsm12	100	85.204	ENSG00000161654	LSM12	100	85.204	Homo_sapiens
ENSIPUG00000014800	lsm12	100	94.388	ENSAPOG00000007907	lsm12b	100	94.388	Acanthochromis_polyacanthus
ENSIPUG00000014800	lsm12	100	83.417	ENSAMEG00000018321	LSM12	100	83.417	Ailuropoda_melanoleuca
ENSIPUG00000014800	lsm12	100	92.857	ENSACIG00000008538	lsm12b	100	92.857	Amphilophus_citrinellus
ENSIPUG00000014800	lsm12	100	94.898	ENSAOCG00000021847	lsm12b	88	94.898	Amphiprion_ocellaris
ENSIPUG00000014800	lsm12	100	94.898	ENSAPEG00000002252	lsm12b	100	94.898	Amphiprion_percula
ENSIPUG00000014800	lsm12	100	93.367	ENSATEG00000005705	lsm12b	100	93.367	Anabas_testudineus
ENSIPUG00000014800	lsm12	100	84.184	ENSACAG00000004618	LSM12	100	84.184	Anolis_carolinensis
ENSIPUG00000014800	lsm12	100	85.204	ENSANAG00000029011	LSM12	100	85.204	Aotus_nancymaae
ENSIPUG00000014800	lsm12	100	93.367	ENSACLG00000026332	lsm12b	100	93.367	Astatotilapia_calliptera
ENSIPUG00000014800	lsm12	100	83.673	ENSAMXG00000036117	lsm12a	91	83.673	Astyanax_mexicanus
ENSIPUG00000014800	lsm12	100	94.388	ENSAMXG00000032952	lsm12b	100	94.388	Astyanax_mexicanus
ENSIPUG00000014800	lsm12	100	85.204	ENSBTAG00000016252	LSM12	100	85.204	Bos_taurus
ENSIPUG00000014800	lsm12	100	85.204	ENSCJAG00000048480	LSM12	100	85.204	Callithrix_jacchus
ENSIPUG00000014800	lsm12	100	85.204	ENSCAFG00000014379	LSM12	92	85.204	Canis_familiaris
ENSIPUG00000014800	lsm12	100	85.204	ENSCAFG00020012173	LSM12	100	85.204	Canis_lupus_dingo
ENSIPUG00000014800	lsm12	100	85.204	ENSCHIG00000018175	LSM12	100	85.204	Capra_hircus
ENSIPUG00000014800	lsm12	100	85.204	ENSTSYG00000036361	LSM12	100	85.204	Carlito_syrichta
ENSIPUG00000014800	lsm12	83	81.481	ENSCAPG00000009647	LSM12	89	81.481	Cavia_aperea
ENSIPUG00000014800	lsm12	100	84.184	ENSCPOG00000012860	LSM12	100	84.184	Cavia_porcellus
ENSIPUG00000014800	lsm12	100	85.204	ENSCCAG00000032905	LSM12	100	85.204	Cebus_capucinus
ENSIPUG00000014800	lsm12	100	85.204	ENSCATG00000030577	-	100	85.204	Cercocebus_atys
ENSIPUG00000014800	lsm12	100	84.694	ENSCLAG00000015759	LSM12	100	84.694	Chinchilla_lanigera
ENSIPUG00000014800	lsm12	100	85.204	ENSCSAG00000003486	LSM12	100	85.204	Chlorocebus_sabaeus
ENSIPUG00000014800	lsm12	56	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSIPUG00000014800	lsm12	100	84.184	ENSCPBG00000027105	LSM12	100	84.184	Chrysemys_picta_bellii
ENSIPUG00000014800	lsm12	100	85.204	ENSCANG00000043328	LSM12	100	85.204	Colobus_angolensis_palliatus
ENSIPUG00000014800	lsm12	100	85.204	ENSCGRG00001002094	Lsm12	100	85.204	Cricetulus_griseus_chok1gshd
ENSIPUG00000014800	lsm12	89	77.586	ENSCGRG00000004316	Lsm12	98	77.586	Cricetulus_griseus_crigri
ENSIPUG00000014800	lsm12	100	93.367	ENSCSEG00000008434	lsm12b	100	93.367	Cynoglossus_semilaevis
ENSIPUG00000014800	lsm12	100	92.857	ENSCVAG00000008755	lsm12b	100	92.857	Cyprinodon_variegatus
ENSIPUG00000014800	lsm12	100	94.388	ENSDARG00000109510	lsm12b	100	94.388	Danio_rerio
ENSIPUG00000014800	lsm12	100	83.673	ENSDARG00000028848	lsm12a	100	83.673	Danio_rerio
ENSIPUG00000014800	lsm12	100	85.204	ENSDNOG00000002418	LSM12	91	85.204	Dasypus_novemcinctus
ENSIPUG00000014800	lsm12	100	85.204	ENSDORG00000016381	Lsm12	100	85.204	Dipodomys_ordii
ENSIPUG00000014800	lsm12	83	36.145	FBgn0030364	Lsm12	76	36.145	Drosophila_melanogaster
ENSIPUG00000014800	lsm12	73	32.278	FBgn0036057	CG14164	83	32.278	Drosophila_melanogaster
ENSIPUG00000014800	lsm12	88	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSIPUG00000014800	lsm12	100	84.694	ENSETEG00000008374	LSM12	100	84.694	Echinops_telfairi
ENSIPUG00000014800	lsm12	85	67.066	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSIPUG00000014800	lsm12	100	85.204	ENSEASG00005010155	LSM12	100	85.204	Equus_asinus_asinus
ENSIPUG00000014800	lsm12	100	85.204	ENSECAG00000009071	LSM12	100	85.204	Equus_caballus
ENSIPUG00000014800	lsm12	78	85.621	ENSEEUG00000002419	-	100	85.621	Erinaceus_europaeus
ENSIPUG00000014800	lsm12	100	89.286	ENSELUG00000000256	-	100	89.286	Esox_lucius
ENSIPUG00000014800	lsm12	100	90.816	ENSELUG00000015538	lsm12b	100	86.224	Esox_lucius
ENSIPUG00000014800	lsm12	100	85.204	ENSFCAG00000037021	LSM12	100	85.204	Felis_catus
ENSIPUG00000014800	lsm12	80	82.051	ENSFDAG00000008954	LSM12	91	82.051	Fukomys_damarensis
ENSIPUG00000014800	lsm12	100	92.857	ENSFHEG00000019913	lsm12b	100	92.857	Fundulus_heteroclitus
ENSIPUG00000014800	lsm12	81	93.038	ENSGMOG00000015449	lsm12b	100	93.038	Gadus_morhua
ENSIPUG00000014800	lsm12	78	86.275	ENSGALG00000039803	LSM12	100	86.275	Gallus_gallus
ENSIPUG00000014800	lsm12	100	92.857	ENSGAFG00000011829	lsm12b	100	92.857	Gambusia_affinis
ENSIPUG00000014800	lsm12	81	93.671	ENSGACG00000003428	lsm12b	100	93.671	Gasterosteus_aculeatus
ENSIPUG00000014800	lsm12	100	84.694	ENSGAGG00000021965	LSM12	100	84.694	Gopherus_agassizii
ENSIPUG00000014800	lsm12	100	85.204	ENSGGOG00000010589	-	100	85.204	Gorilla_gorilla
ENSIPUG00000014800	lsm12	85	94.012	ENSHBUG00000007667	lsm12b	74	94.012	Haplochromis_burtoni
ENSIPUG00000014800	lsm12	100	85.204	ENSHGLG00000011411	LSM12	100	85.204	Heterocephalus_glaber_female
ENSIPUG00000014800	lsm12	79	85.065	ENSHGLG00100000241	LSM12	82	85.065	Heterocephalus_glaber_male
ENSIPUG00000014800	lsm12	100	91.837	ENSHCOG00000002094	lsm12b	100	91.837	Hippocampus_comes
ENSIPUG00000014800	lsm12	100	85.204	ENSSTOG00000007403	LSM12	100	85.204	Ictidomys_tridecemlineatus
ENSIPUG00000014800	lsm12	100	84.184	ENSJJAG00000004364	-	100	84.545	Jaculus_jaculus
ENSIPUG00000014800	lsm12	96	75.263	ENSJJAG00000011793	-	100	75.263	Jaculus_jaculus
ENSIPUG00000014800	lsm12	80	72.956	ENSJJAG00000014652	-	95	72.956	Jaculus_jaculus
ENSIPUG00000014800	lsm12	85	94.611	ENSKMAG00000007704	lsm12b	56	94.611	Kryptolebias_marmoratus
ENSIPUG00000014800	lsm12	100	95.408	ENSLBEG00000027999	lsm12b	100	95.408	Labrus_bergylta
ENSIPUG00000014800	lsm12	100	87.755	ENSLACG00000015981	LSM12	100	87.755	Latimeria_chalumnae
ENSIPUG00000014800	lsm12	100	90.306	ENSLOCG00000013079	lsm12b	99	90.306	Lepisosteus_oculatus
ENSIPUG00000014800	lsm12	100	85.204	ENSLAFG00000005202	LSM12	100	85.204	Loxodonta_africana
ENSIPUG00000014800	lsm12	100	85.204	ENSMFAG00000031376	LSM12	100	85.204	Macaca_fascicularis
ENSIPUG00000014800	lsm12	65	73.563	ENSMMUG00000042106	-	100	73.563	Macaca_mulatta
ENSIPUG00000014800	lsm12	100	85.204	ENSMMUG00000006804	LSM12	100	85.204	Macaca_mulatta
ENSIPUG00000014800	lsm12	100	85.204	ENSMNEG00000030594	-	100	85.204	Macaca_nemestrina
ENSIPUG00000014800	lsm12	100	85.204	ENSMLEG00000039934	LSM12	100	85.204	Mandrillus_leucophaeus
ENSIPUG00000014800	lsm12	100	94.388	ENSMAMG00000004279	lsm12b	100	94.388	Mastacembelus_armatus
ENSIPUG00000014800	lsm12	100	93.367	ENSMZEG00005005754	lsm12b	100	93.367	Maylandia_zebra
ENSIPUG00000014800	lsm12	100	85.204	ENSMICG00000037219	LSM12	100	85.204	Microcebus_murinus
ENSIPUG00000014800	lsm12	100	72.959	ENSMOCG00000017015	-	86	72.959	Microtus_ochrogaster
ENSIPUG00000014800	lsm12	100	85.204	ENSMOCG00000019878	-	100	85.204	Microtus_ochrogaster
ENSIPUG00000014800	lsm12	100	94.388	ENSMMOG00000020848	lsm12b	100	94.388	Mola_mola
ENSIPUG00000014800	lsm12	100	94.388	ENSMALG00000007578	lsm12b	100	94.388	Monopterus_albus
ENSIPUG00000014800	lsm12	100	84.694	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.694	Mus_caroli
ENSIPUG00000014800	lsm12	100	85.204	ENSMUSG00000020922	Lsm12	100	85.204	Mus_musculus
ENSIPUG00000014800	lsm12	100	78.404	MGP_PahariEiJ_G0018371	Lsm12	100	78.404	Mus_pahari
ENSIPUG00000014800	lsm12	100	84.694	MGP_SPRETEiJ_G0018084	Lsm12	99	86.111	Mus_spretus
ENSIPUG00000014800	lsm12	100	85.714	ENSMLUG00000006391	LSM12	100	85.714	Myotis_lucifugus
ENSIPUG00000014800	lsm12	100	85.204	ENSNGAG00000001870	Lsm12	100	85.204	Nannospalax_galili
ENSIPUG00000014800	lsm12	100	59.113	ENSNGAG00000015429	-	100	59.113	Nannospalax_galili
ENSIPUG00000014800	lsm12	100	93.367	ENSNBRG00000006266	lsm12b	100	93.367	Neolamprologus_brichardi
ENSIPUG00000014800	lsm12	100	85.204	ENSNLEG00000005580	-	100	85.204	Nomascus_leucogenys
ENSIPUG00000014800	lsm12	85	84.940	ENSMEUG00000007501	-	100	84.940	Notamacropus_eugenii
ENSIPUG00000014800	lsm12	100	85.204	ENSOPRG00000008552	LSM12	100	85.204	Ochotona_princeps
ENSIPUG00000014800	lsm12	99	84.536	ENSODEG00000017998	-	99	84.536	Octodon_degus
ENSIPUG00000014800	lsm12	100	77.041	ENSODEG00000007886	-	74	77.041	Octodon_degus
ENSIPUG00000014800	lsm12	100	93.367	ENSONIG00000007933	lsm12b	100	93.367	Oreochromis_niloticus
ENSIPUG00000014800	lsm12	100	83.417	ENSOCUG00000008566	-	100	83.417	Oryctolagus_cuniculus
ENSIPUG00000014800	lsm12	99	79.487	ENSOCUG00000027889	-	100	79.487	Oryctolagus_cuniculus
ENSIPUG00000014800	lsm12	99	80.000	ENSOCUG00000021254	-	100	80.000	Oryctolagus_cuniculus
ENSIPUG00000014800	lsm12	99	78.974	ENSOCUG00000024823	-	100	78.974	Oryctolagus_cuniculus
ENSIPUG00000014800	lsm12	100	93.367	ENSORLG00000011310	lsm12b	100	93.367	Oryzias_latipes
ENSIPUG00000014800	lsm12	100	93.367	ENSORLG00020002060	lsm12b	92	93.367	Oryzias_latipes_hni
ENSIPUG00000014800	lsm12	100	93.367	ENSORLG00015001647	lsm12b	92	93.367	Oryzias_latipes_hsok
ENSIPUG00000014800	lsm12	100	94.388	ENSOMEG00000006184	lsm12b	92	94.388	Oryzias_melastigma
ENSIPUG00000014800	lsm12	100	85.204	ENSOGAG00000010489	LSM12	100	85.204	Otolemur_garnettii
ENSIPUG00000014800	lsm12	100	82.178	ENSOARG00000006589	LSM12	100	82.178	Ovis_aries
ENSIPUG00000014800	lsm12	100	76.020	ENSPPAG00000034974	-	100	76.020	Pan_paniscus
ENSIPUG00000014800	lsm12	100	85.204	ENSPPRG00000023420	LSM12	100	85.204	Panthera_pardus
ENSIPUG00000014800	lsm12	78	85.621	ENSPTIG00000012704	-	82	85.621	Panthera_tigris_altaica
ENSIPUG00000014800	lsm12	72	84.545	ENSPTIG00000014850	-	100	84.545	Panthera_tigris_altaica
ENSIPUG00000014800	lsm12	100	85.204	ENSPTRG00000009261	LSM12	100	85.204	Pan_troglodytes
ENSIPUG00000014800	lsm12	100	85.204	ENSPANG00000021315	-	100	85.204	Papio_anubis
ENSIPUG00000014800	lsm12	100	81.633	ENSPKIG00000017932	-	100	81.633	Paramormyrops_kingsleyae
ENSIPUG00000014800	lsm12	100	91.327	ENSPKIG00000021058	lsm12b	100	91.327	Paramormyrops_kingsleyae
ENSIPUG00000014800	lsm12	100	93.878	ENSPMGG00000021344	lsm12b	100	93.878	Periophthalmus_magnuspinnatus
ENSIPUG00000014800	lsm12	100	85.204	ENSPEMG00000012199	Lsm12	100	85.204	Peromyscus_maniculatus_bairdii
ENSIPUG00000014800	lsm12	89	65.143	ENSPMAG00000005461	lsm12a	99	65.143	Petromyzon_marinus
ENSIPUG00000014800	lsm12	100	85.204	ENSPCIG00000020244	LSM12	100	85.204	Phascolarctos_cinereus
ENSIPUG00000014800	lsm12	100	91.837	ENSPFOG00000015930	lsm12b	100	91.837	Poecilia_formosa
ENSIPUG00000014800	lsm12	100	91.837	ENSPLAG00000021089	lsm12b	100	91.837	Poecilia_latipinna
ENSIPUG00000014800	lsm12	100	91.837	ENSPMEG00000012961	lsm12b	100	91.837	Poecilia_mexicana
ENSIPUG00000014800	lsm12	87	92.398	ENSPREG00000010236	lsm12b	95	92.398	Poecilia_reticulata
ENSIPUG00000014800	lsm12	100	85.204	ENSPPYG00000008344	LSM12	100	85.204	Pongo_abelii
ENSIPUG00000014800	lsm12	81	85.535	ENSPCAG00000008790	LSM12	100	85.535	Procavia_capensis
ENSIPUG00000014800	lsm12	100	85.204	ENSPCOG00000027951	LSM12	100	85.204	Propithecus_coquereli
ENSIPUG00000014800	lsm12	100	85.714	ENSPVAG00000013706	LSM12	100	85.714	Pteropus_vampyrus
ENSIPUG00000014800	lsm12	100	93.367	ENSPNYG00000003386	lsm12b	100	93.367	Pundamilia_nyererei
ENSIPUG00000014800	lsm12	100	94.898	ENSPNAG00000004186	lsm12b	100	94.898	Pygocentrus_nattereri
ENSIPUG00000014800	lsm12	100	83.163	ENSPNAG00000018435	lsm12a	100	83.163	Pygocentrus_nattereri
ENSIPUG00000014800	lsm12	100	85.204	ENSRNOG00000020894	Lsm12	100	85.204	Rattus_norvegicus
ENSIPUG00000014800	lsm12	100	85.204	ENSRBIG00000027910	LSM12	100	85.204	Rhinopithecus_bieti
ENSIPUG00000014800	lsm12	99	53.093	ENSRROG00000000537	-	99	53.093	Rhinopithecus_roxellana
ENSIPUG00000014800	lsm12	100	85.204	ENSRROG00000045530	-	100	85.204	Rhinopithecus_roxellana
ENSIPUG00000014800	lsm12	100	85.204	ENSSBOG00000025310	LSM12	100	85.204	Saimiri_boliviensis_boliviensis
ENSIPUG00000014800	lsm12	81	84.177	ENSSHAG00000014914	LSM12	100	84.177	Sarcophilus_harrisii
ENSIPUG00000014800	lsm12	100	92.347	ENSSFOG00015009612	lsm12	100	92.347	Scleropages_formosus
ENSIPUG00000014800	lsm12	100	90.816	ENSSFOG00015020392	lsm12a	100	90.816	Scleropages_formosus
ENSIPUG00000014800	lsm12	100	94.388	ENSSMAG00000008089	lsm12b	100	94.388	Scophthalmus_maximus
ENSIPUG00000014800	lsm12	100	94.898	ENSSDUG00000012711	lsm12b	100	94.898	Seriola_dumerili
ENSIPUG00000014800	lsm12	100	94.898	ENSSLDG00000007404	lsm12b	100	94.898	Seriola_lalandi_dorsalis
ENSIPUG00000014800	lsm12	78	84.967	ENSSARG00000005537	LSM12	100	84.967	Sorex_araneus
ENSIPUG00000014800	lsm12	100	85.204	ENSSPUG00000011984	LSM12	100	85.204	Sphenodon_punctatus
ENSIPUG00000014800	lsm12	100	94.898	ENSSPAG00000017058	lsm12b	100	94.898	Stegastes_partitus
ENSIPUG00000014800	lsm12	100	85.204	ENSSSCG00000032394	LSM12	100	85.204	Sus_scrofa
ENSIPUG00000014800	lsm12	100	93.367	ENSTRUG00000007121	lsm12b	100	93.367	Takifugu_rubripes
ENSIPUG00000014800	lsm12	100	92.347	ENSTNIG00000014436	lsm12b	100	92.347	Tetraodon_nigroviridis
ENSIPUG00000014800	lsm12	100	84.694	ENSTBEG00000012523	-	100	84.694	Tupaia_belangeri
ENSIPUG00000014800	lsm12	100	83.163	ENSTBEG00000012392	-	100	83.163	Tupaia_belangeri
ENSIPUG00000014800	lsm12	100	85.204	ENSTTRG00000010433	LSM12	100	85.204	Tursiops_truncatus
ENSIPUG00000014800	lsm12	100	85.204	ENSUAMG00000006313	LSM12	100	85.204	Ursus_americanus
ENSIPUG00000014800	lsm12	81	82.911	ENSUMAG00000012987	LSM12	90	82.911	Ursus_maritimus
ENSIPUG00000014800	lsm12	100	80.102	ENSVPAG00000011145	LSM12	100	80.102	Vicugna_pacos
ENSIPUG00000014800	lsm12	100	85.204	ENSVVUG00000017581	LSM12	100	85.204	Vulpes_vulpes
ENSIPUG00000014800	lsm12	82	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSIPUG00000014800	lsm12	100	92.857	ENSXCOG00000003994	lsm12b	100	92.857	Xiphophorus_couchianus
ENSIPUG00000014800	lsm12	100	92.857	ENSXMAG00000020950	lsm12b	100	92.857	Xiphophorus_maculatus