EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000014942 (Gene tree)
Gene ID: 108280403
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 24190 bases
Position: chr20:11438946-11463135
Accession: 108280403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000022037	PRP38	PF03371.15	6.4e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000022983	-	1623	XM_017495341	ENSIPUP00000022037	464 (aa)	XP_017350830	A0A2D0T865

Gene Model

Click here to download ENSIPUG00000014942's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000014942's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000014942	prpf38b	58	81.655	ENSAPOG00000012791	-	93	65.086	Acanthochromis_polyacanthus
ENSIPUG00000014942	prpf38b	58	81.655	ENSAPOG00000005297	prpf38b	93	65.086	Acanthochromis_polyacanthus
ENSIPUG00000014942	prpf38b	58	82.014	ENSAOCG00000012675	prpf38b	85	65.302	Amphiprion_ocellaris
ENSIPUG00000014942	prpf38b	58	81.655	ENSAPEG00000010974	prpf38b	88	95.455	Amphiprion_percula
ENSIPUG00000014942	prpf38b	95	63.656	ENSACLG00000001712	prpf38b	96	67.865	Astatotilapia_calliptera
ENSIPUG00000014942	prpf38b	99	70.935	ENSDARG00000053101	prpf38b	95	90.244	Danio_rerio
ENSIPUG00000014942	prpf38b	96	65.714	ENSFHEG00000002861	prpf38b	95	67.325	Fundulus_heteroclitus
ENSIPUG00000014942	prpf38b	94	63.966	ENSGACG00000015154	prpf38b	94	66.738	Gasterosteus_aculeatus
ENSIPUG00000014942	prpf38b	95	64.317	ENSHBUG00000022496	prpf38b	96	68.790	Haplochromis_burtoni
ENSIPUG00000014942	prpf38b	98	62.128	ENSLBEG00000024500	prpf38b	88	91.925	Labrus_bergylta
ENSIPUG00000014942	prpf38b	97	62.419	ENSMAMG00000010641	prpf38b	81	96.104	Mastacembelus_armatus
ENSIPUG00000014942	prpf38b	95	63.656	ENSMZEG00005025536	prpf38b	96	67.865	Maylandia_zebra
ENSIPUG00000014942	prpf38b	95	64.317	ENSPNYG00000007625	prpf38b	96	68.790	Pundamilia_nyererei
ENSIPUG00000014942	prpf38b	58	81.655	ENSSPAG00000023160	-	93	64.871	Stegastes_partitus