EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000015215 (Gene tree)
Gene ID: 108259941
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 149353 bases
Position: chr2:20278955-20428307
Accession: 108259941
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000022483	Fox-1_C	PF12414.8	3.5e-43	1	1
ENSIPUP00000022532	Fox-1_C	PF12414.8	3.8e-43	1	1
ENSIPUP00000022451	Fox-1_C	PF12414.8	4e-43	1	1
ENSIPUP00000022504	Fox-1_C	PF12414.8	3.8e-40	1	1
ENSIPUP00000022437	Fox-1_C	PF12414.8	4.3e-40	1	1
ENSIPUP00000022572	Fox-1_C	PF12414.8	5.9e-24	1	2
ENSIPUP00000022572	Fox-1_C	PF12414.8	5.9e-24	2	2
ENSIPUP00000022584	Fox-1_C	PF12414.8	8.5e-18	1	1
ENSIPUP00000022504	RRM_1	PF00076.22	3.6e-18	1	1
ENSIPUP00000022483	RRM_1	PF00076.22	3.6e-18	1	1
ENSIPUP00000022532	RRM_1	PF00076.22	4.1e-18	1	1
ENSIPUP00000022437	RRM_1	PF00076.22	4.1e-18	1	1
ENSIPUP00000022584	RRM_1	PF00076.22	4.3e-18	1	1
ENSIPUP00000022572	RRM_1	PF00076.22	7e-18	1	1
ENSIPUP00000022451	RRM_1	PF00076.22	7.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000023416	-	2561	XM_017459767	ENSIPUP00000022451	377 (aa)	XP_017315256	-
ENSIPUT00000023540	-	1098	-	ENSIPUP00000022572	365 (aa)	-	-
ENSIPUT00000023450	-	2730	XM_017459787	ENSIPUP00000022483	349 (aa)	XP_017315276	A0A2D0QAL7
ENSIPUT00000023471	-	2259	-	ENSIPUP00000022504	348 (aa)	-	-
ENSIPUT00000023399	-	2668	XM_017459796	ENSIPUP00000022437	372 (aa)	XP_017315285	A0A2D0QD35
ENSIPUT00000023499	-	2121	-	ENSIPUP00000022532	365 (aa)	-	-
ENSIPUT00000023554	-	1011	-	ENSIPUP00000022584	336 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000015215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000015215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000015215	rbfox1	96	69.096	ENSIPUG00000012010	rbfox3a	95	73.270
ENSIPUG00000015215	rbfox1	96	54.054	ENSIPUG00000016896	rbfox2	95	57.426
ENSIPUG00000015215	rbfox1	89	60.290	ENSIPUG00000021966	rbfox3b	97	69.380
ENSIPUG00000015215	rbfox1	74	63.910	ENSIPUG00000000065	rbfox1l	64	69.469

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000015215	rbfox1	100	90.857	ENSG00000078328	RBFOX1	95	90.857	Homo_sapiens
ENSIPUG00000015215	rbfox1	100	84.196	ENSAPOG00000003197	rbfox1	95	83.106	Acanthochromis_polyacanthus
ENSIPUG00000015215	rbfox1	64	84.332	ENSAMEG00000008605	RBFOX1	90	83.929	Ailuropoda_melanoleuca
ENSIPUG00000015215	rbfox1	69	73.234	ENSACIG00000005478	rbfox1	63	75.000	Amphilophus_citrinellus
ENSIPUG00000015215	rbfox1	81	77.931	ENSAOCG00000008283	rbfox1	99	76.552	Amphiprion_ocellaris
ENSIPUG00000015215	rbfox1	100	71.739	ENSAPEG00000010636	rbfox1	100	74.286	Amphiprion_percula
ENSIPUG00000015215	rbfox1	81	75.685	ENSATEG00000007513	rbfox1	100	75.316	Anabas_testudineus
ENSIPUG00000015215	rbfox1	100	84.881	ENSAPLG00000013263	RBFOX1	94	84.881	Anas_platyrhynchos
ENSIPUG00000015215	rbfox1	100	81.053	ENSACAG00000004013	RBFOX1	95	81.053	Anolis_carolinensis
ENSIPUG00000015215	rbfox1	100	90.857	ENSANAG00000029527	RBFOX1	93	90.857	Aotus_nancymaae
ENSIPUG00000015215	rbfox1	65	93.578	ENSAMXG00000002431	rbfox1	73	91.200	Astyanax_mexicanus
ENSIPUG00000015215	rbfox1	100	81.383	ENSBTAG00000007210	RBFOX1	100	81.383	Bos_taurus
ENSIPUG00000015215	rbfox1	100	88.319	ENSCJAG00000017351	RBFOX1	99	79.896	Callithrix_jacchus
ENSIPUG00000015215	rbfox1	100	82.011	ENSCAFG00000019082	RBFOX1	95	78.338	Canis_familiaris
ENSIPUG00000015215	rbfox1	97	68.033	ENSCAFG00020024881	RBFOX1	93	67.714	Canis_lupus_dingo
ENSIPUG00000015215	rbfox1	100	81.915	ENSCHIG00000023549	RBFOX1	100	81.915	Capra_hircus
ENSIPUG00000015215	rbfox1	100	90.000	ENSTSYG00000005334	RBFOX1	97	90.000	Carlito_syrichta
ENSIPUG00000015215	rbfox1	100	83.289	ENSCAPG00000017669	RBFOX1	97	83.289	Cavia_aperea
ENSIPUG00000015215	rbfox1	100	83.289	ENSCPOG00000011314	RBFOX1	96	83.289	Cavia_porcellus
ENSIPUG00000015215	rbfox1	100	90.857	ENSCCAG00000023031	RBFOX1	93	90.857	Cebus_capucinus
ENSIPUG00000015215	rbfox1	100	90.857	ENSCATG00000033816	RBFOX1	93	90.857	Cercocebus_atys
ENSIPUG00000015215	rbfox1	100	83.289	ENSCLAG00000012761	RBFOX1	100	80.585	Chinchilla_lanigera
ENSIPUG00000015215	rbfox1	100	81.649	ENSCSAG00000008739	RBFOX1	100	81.649	Chlorocebus_sabaeus
ENSIPUG00000015215	rbfox1	79	90.769	ENSCHOG00000012843	RBFOX1	64	90.769	Choloepus_hoffmanni
ENSIPUG00000015215	rbfox1	100	91.714	ENSCPBG00000026626	RBFOX1	100	82.181	Chrysemys_picta_bellii
ENSIPUG00000015215	rbfox1	100	90.857	ENSCANG00000033125	RBFOX1	93	90.857	Colobus_angolensis_palliatus
ENSIPUG00000015215	rbfox1	100	82.979	ENSCGRG00001013729	Rbfox1	95	82.979	Cricetulus_griseus_chok1gshd
ENSIPUG00000015215	rbfox1	100	82.979	ENSCGRG00000003272	Rbfox1	95	82.979	Cricetulus_griseus_crigri
ENSIPUG00000015215	rbfox1	100	76.486	ENSCSEG00000008840	rbfox1	100	75.676	Cynoglossus_semilaevis
ENSIPUG00000015215	rbfox1	100	91.168	ENSDARG00000014746	rbfox1	100	97.854	Danio_rerio
ENSIPUG00000015215	rbfox1	100	83.820	ENSDNOG00000043612	RBFOX1	91	83.820	Dasypus_novemcinctus
ENSIPUG00000015215	rbfox1	100	79.683	ENSDORG00000010024	Rbfox1	94	81.003	Dipodomys_ordii
ENSIPUG00000015215	rbfox1	100	69.761	ENSETEG00000003771	RBFOX1	95	66.919	Echinops_telfairi
ENSIPUG00000015215	rbfox1	100	83.554	ENSEASG00005011599	RBFOX1	95	81.481	Equus_asinus_asinus
ENSIPUG00000015215	rbfox1	100	82.500	ENSECAG00000012667	RBFOX1	100	81.383	Equus_caballus
ENSIPUG00000015215	rbfox1	79	81.726	ENSELUG00000013096	rbfox1	99	82.234	Esox_lucius
ENSIPUG00000015215	rbfox1	100	90.571	ENSFCAG00000025322	RBFOX1	100	81.383	Felis_catus
ENSIPUG00000015215	rbfox1	85	82.663	ENSFALG00000004027	RBFOX1	97	82.972	Ficedula_albicollis
ENSIPUG00000015215	rbfox1	100	83.289	ENSFDAG00000007388	RBFOX1	95	83.289	Fukomys_damarensis
ENSIPUG00000015215	rbfox1	100	88.472	ENSGALG00000034325	RBFOX1	96	88.472	Gallus_gallus
ENSIPUG00000015215	rbfox1	100	89.174	ENSGAGG00000023681	RBFOX1	100	84.615	Gopherus_agassizii
ENSIPUG00000015215	rbfox1	100	90.857	ENSGGOG00000016871	-	93	90.857	Gorilla_gorilla
ENSIPUG00000015215	rbfox1	100	83.289	ENSHGLG00000016944	RBFOX1	100	80.585	Heterocephalus_glaber_female
ENSIPUG00000015215	rbfox1	100	83.289	ENSHGLG00100003272	RBFOX1	100	80.585	Heterocephalus_glaber_male
ENSIPUG00000015215	rbfox1	89	76.875	ENSHCOG00000016419	rbfox1	93	75.610	Hippocampus_comes
ENSIPUG00000015215	rbfox1	100	83.024	ENSSTOG00000000322	RBFOX1	100	80.053	Ictidomys_tridecemlineatus
ENSIPUG00000015215	rbfox1	100	82.713	ENSJJAG00000002575	Rbfox1	95	82.713	Jaculus_jaculus
ENSIPUG00000015215	rbfox1	97	79.437	ENSLBEG00000014659	rbfox1	98	77.454	Labrus_bergylta
ENSIPUG00000015215	rbfox1	100	84.737	ENSLOCG00000006675	rbfox1	95	84.737	Lepisosteus_oculatus
ENSIPUG00000015215	rbfox1	80	85.065	ENSLAFG00000011480	RBFOX1	100	85.065	Loxodonta_africana
ENSIPUG00000015215	rbfox1	100	90.571	ENSMFAG00000036447	RBFOX1	93	90.571	Macaca_fascicularis
ENSIPUG00000015215	rbfox1	100	90.571	ENSMMUG00000003458	RBFOX1	93	90.571	Macaca_mulatta
ENSIPUG00000015215	rbfox1	100	87.966	ENSMNEG00000032034	RBFOX1	88	87.966	Macaca_nemestrina
ENSIPUG00000015215	rbfox1	100	90.857	ENSMLEG00000015382	RBFOX1	93	90.857	Mandrillus_leucophaeus
ENSIPUG00000015215	rbfox1	100	80.274	ENSMAMG00000003142	rbfox1	100	79.726	Mastacembelus_armatus
ENSIPUG00000015215	rbfox1	78	80.069	ENSMGAG00000008606	RBFOX1	98	79.720	Meleagris_gallopavo
ENSIPUG00000015215	rbfox1	100	48.626	ENSMAUG00000020570	Rbfox1	95	50.448	Mesocricetus_auratus
ENSIPUG00000015215	rbfox1	100	90.857	ENSMICG00000034286	RBFOX1	93	90.857	Microcebus_murinus
ENSIPUG00000015215	rbfox1	100	83.511	ENSMOCG00000020932	Rbfox1	98	83.511	Microtus_ochrogaster
ENSIPUG00000015215	rbfox1	89	79.487	ENSMMOG00000009716	rbfox1	86	83.390	Mola_mola
ENSIPUG00000015215	rbfox1	94	83.898	ENSMODG00000005826	RBFOX1	100	83.898	Monodelphis_domestica
ENSIPUG00000015215	rbfox1	100	83.380	ENSMALG00000003337	rbfox1	94	81.667	Monopterus_albus
ENSIPUG00000015215	rbfox1	100	83.245	MGP_CAROLIEiJ_G0020427	Rbfox1	95	83.245	Mus_caroli
ENSIPUG00000015215	rbfox1	100	84.358	ENSMUSG00000008658	Rbfox1	99	87.121	Mus_musculus
ENSIPUG00000015215	rbfox1	100	83.245	MGP_PahariEiJ_G0016135	Rbfox1	95	83.245	Mus_pahari
ENSIPUG00000015215	rbfox1	100	82.713	MGP_SPRETEiJ_G0021321	Rbfox1	95	82.713	Mus_spretus
ENSIPUG00000015215	rbfox1	97	81.694	ENSMPUG00000014822	RBFOX1	94	81.402	Mustela_putorius_furo
ENSIPUG00000015215	rbfox1	80	85.342	ENSMLUG00000015896	RBFOX1	100	85.342	Myotis_lucifugus
ENSIPUG00000015215	rbfox1	100	83.554	ENSNGAG00000023276	Rbfox1	97	83.554	Nannospalax_galili
ENSIPUG00000015215	rbfox1	100	62.532	ENSNBRG00000011084	rbfox1	93	61.111	Neolamprologus_brichardi
ENSIPUG00000015215	rbfox1	100	90.571	ENSNLEG00000010017	-	93	90.571	Nomascus_leucogenys
ENSIPUG00000015215	rbfox1	83	93.846	ENSMEUG00000012525	RBFOX1	69	93.846	Notamacropus_eugenii
ENSIPUG00000015215	rbfox1	87	87.317	ENSOPRG00000006199	-	63	97.500	Ochotona_princeps
ENSIPUG00000015215	rbfox1	100	82.759	ENSODEG00000013166	RBFOX1	95	82.759	Octodon_degus
ENSIPUG00000015215	rbfox1	100	82.447	ENSOANG00000002379	RBFOX1	100	82.447	Ornithorhynchus_anatinus
ENSIPUG00000015215	rbfox1	64	85.253	ENSOCUG00000001205	-	96	85.253	Oryctolagus_cuniculus
ENSIPUG00000015215	rbfox1	100	83.820	ENSOGAG00000025535	RBFOX1	95	83.820	Otolemur_garnettii
ENSIPUG00000015215	rbfox1	64	74.537	ENSOARG00000005135	RBFOX1	87	79.803	Ovis_aries
ENSIPUG00000015215	rbfox1	100	90.857	ENSPPAG00000036238	-	97	90.857	Pan_paniscus
ENSIPUG00000015215	rbfox1	100	90.571	ENSPPRG00000006546	RBFOX1	93	90.571	Panthera_pardus
ENSIPUG00000015215	rbfox1	100	77.095	ENSPTIG00000021154	RBFOX1	96	76.685	Panthera_tigris_altaica
ENSIPUG00000015215	rbfox1	100	90.857	ENSPTRG00000007744	RBFOX1	93	90.857	Pan_troglodytes
ENSIPUG00000015215	rbfox1	100	90.857	ENSPANG00000026500	RBFOX1	93	90.857	Papio_anubis
ENSIPUG00000015215	rbfox1	100	89.205	ENSPKIG00000009667	-	99	88.081	Paramormyrops_kingsleyae
ENSIPUG00000015215	rbfox1	81	88.603	ENSPKIG00000019353	rbfox1	88	88.686	Paramormyrops_kingsleyae
ENSIPUG00000015215	rbfox1	100	84.881	ENSPSIG00000006523	RBFOX1	94	84.881	Pelodiscus_sinensis
ENSIPUG00000015215	rbfox1	100	83.245	ENSPEMG00000017607	Rbfox1	95	83.245	Peromyscus_maniculatus_bairdii
ENSIPUG00000015215	rbfox1	75	81.724	ENSPCIG00000026887	RBFOX1	99	82.857	Phascolarctos_cinereus
ENSIPUG00000015215	rbfox1	97	81.694	ENSPPYG00000007079	-	93	81.793	Pongo_abelii
ENSIPUG00000015215	rbfox1	89	72.485	ENSPCAG00000002630	RBFOX1	94	68.908	Procavia_capensis
ENSIPUG00000015215	rbfox1	100	90.857	ENSPCOG00000025687	RBFOX1	93	90.857	Propithecus_coquereli
ENSIPUG00000015215	rbfox1	100	77.249	ENSPVAG00000013467	RBFOX1	95	74.307	Pteropus_vampyrus
ENSIPUG00000015215	rbfox1	100	91.599	ENSPNAG00000023109	rbfox1	100	91.599	Pygocentrus_nattereri
ENSIPUG00000015215	rbfox1	100	82.979	ENSRNOG00000002827	Rbfox1	100	77.660	Rattus_norvegicus
ENSIPUG00000015215	rbfox1	100	90.857	ENSRBIG00000044478	RBFOX1	97	90.857	Rhinopithecus_bieti
ENSIPUG00000015215	rbfox1	100	90.857	ENSRROG00000044411	RBFOX1	93	90.857	Rhinopithecus_roxellana
ENSIPUG00000015215	rbfox1	100	90.286	ENSSBOG00000033726	RBFOX1	93	90.286	Saimiri_boliviensis_boliviensis
ENSIPUG00000015215	rbfox1	100	85.146	ENSSHAG00000009257	RBFOX1	100	88.720	Sarcophilus_harrisii
ENSIPUG00000015215	rbfox1	100	76.301	ENSSFOG00015023675	rbfox1	100	76.301	Scleropages_formosus
ENSIPUG00000015215	rbfox1	89	77.287	ENSSFOG00015009955	-	83	76.453	Scleropages_formosus
ENSIPUG00000015215	rbfox1	100	83.333	ENSSMAG00000015505	rbfox1	100	76.513	Scophthalmus_maximus
ENSIPUG00000015215	rbfox1	100	80.737	ENSSDUG00000016413	rbfox1	99	84.195	Seriola_dumerili
ENSIPUG00000015215	rbfox1	89	78.275	ENSSLDG00000009353	rbfox1	98	76.418	Seriola_lalandi_dorsalis
ENSIPUG00000015215	rbfox1	89	85.304	ENSSPUG00000009732	RBFOX1	87	85.437	Sphenodon_punctatus
ENSIPUG00000015215	rbfox1	100	83.106	ENSSPAG00000009723	rbfox1	98	85.924	Stegastes_partitus
ENSIPUG00000015215	rbfox1	96	82.967	ENSSSCG00000007917	RBFOX1	100	82.486	Sus_scrofa
ENSIPUG00000015215	rbfox1	100	85.411	ENSTGUG00000004562	RBFOX1	97	85.411	Taeniopygia_guttata
ENSIPUG00000015215	rbfox1	100	83.288	ENSTRUG00000020940	rbfox1	96	83.014	Takifugu_rubripes
ENSIPUG00000015215	rbfox1	61	92.000	ENSTNIG00000002567	rbfox1	100	66.202	Tetraodon_nigroviridis
ENSIPUG00000015215	rbfox1	67	94.074	ENSTBEG00000009169	-	56	94.074	Tupaia_belangeri
ENSIPUG00000015215	rbfox1	100	81.746	ENSTTRG00000005700	RBFOX1	95	78.086	Tursiops_truncatus
ENSIPUG00000015215	rbfox1	100	79.387	ENSUAMG00000024633	RBFOX1	100	84.211	Ursus_americanus
ENSIPUG00000015215	rbfox1	100	74.444	ENSUMAG00000003579	RBFOX1	97	74.860	Ursus_maritimus
ENSIPUG00000015215	rbfox1	80	82.468	ENSVPAG00000001284	RBFOX1	74	82.468	Vicugna_pacos
ENSIPUG00000015215	rbfox1	100	90.857	ENSVVUG00000017311	RBFOX1	100	81.383	Vulpes_vulpes