EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000015229 (Gene tree)
Gene ID: 108280294
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 20524 bases
Position: chr20:21953095-21973618
Accession: 108280294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000022548	XRN_N	PF03159.18	4.9e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000023515	-	4998	XM_017495142	ENSIPUP00000022548	1665 (aa)	XP_017350631	-

Gene Model

Click here to download ENSIPUG00000015229's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000015229's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000015229	xrn1	99	62.486	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSIPUG00000015229	xrn1	97	79.183	ENSAPOG00000000622	xrn1	98	80.703	Acanthochromis_polyacanthus
ENSIPUG00000015229	xrn1	99	61.033	ENSAMEG00000012538	XRN1	99	61.011	Ailuropoda_melanoleuca
ENSIPUG00000015229	xrn1	95	78.676	ENSACIG00000001057	xrn1	98	78.741	Amphilophus_citrinellus
ENSIPUG00000015229	xrn1	100	69.964	ENSAOCG00000014097	xrn1	100	69.816	Amphiprion_ocellaris
ENSIPUG00000015229	xrn1	100	69.828	ENSAPEG00000006620	xrn1	98	72.418	Amphiprion_percula
ENSIPUG00000015229	xrn1	96	76.090	ENSATEG00000009752	xrn1	99	76.168	Anabas_testudineus
ENSIPUG00000015229	xrn1	98	61.614	ENSAPLG00000004905	XRN1	100	60.980	Anas_platyrhynchos
ENSIPUG00000015229	xrn1	99	60.589	ENSACAG00000004985	XRN1	97	70.144	Anolis_carolinensis
ENSIPUG00000015229	xrn1	96	63.827	ENSANAG00000029013	XRN1	99	74.846	Aotus_nancymaae
ENSIPUG00000015229	xrn1	100	68.754	ENSACLG00000004806	xrn1	99	68.500	Astatotilapia_calliptera
ENSIPUG00000015229	xrn1	100	77.187	ENSAMXG00000019370	xrn1	95	99.029	Astyanax_mexicanus
ENSIPUG00000015229	xrn1	99	62.178	ENSBTAG00000011524	XRN1	99	62.156	Bos_taurus
ENSIPUG00000015229	xrn1	72	37.823	WBGene00012730	xrn-1	80	37.892	Caenorhabditis_elegans
ENSIPUG00000015229	xrn1	97	63.329	ENSCJAG00000001872	XRN1	99	63.420	Callithrix_jacchus
ENSIPUG00000015229	xrn1	96	63.914	ENSCAFG00000007783	XRN1	99	62.164	Canis_familiaris
ENSIPUG00000015229	xrn1	96	63.406	ENSCAFG00020009120	XRN1	99	76.619	Canis_lupus_dingo
ENSIPUG00000015229	xrn1	99	61.740	ENSCHIG00000019192	XRN1	99	61.718	Capra_hircus
ENSIPUG00000015229	xrn1	99	62.063	ENSTSYG00000002705	XRN1	99	61.927	Carlito_syrichta
ENSIPUG00000015229	xrn1	99	62.328	ENSCCAG00000034800	XRN1	99	79.206	Cebus_capucinus
ENSIPUG00000015229	xrn1	96	64.766	ENSCATG00000041794	XRN1	99	62.723	Cercocebus_atys
ENSIPUG00000015229	xrn1	99	62.860	ENSCLAG00000001451	XRN1	99	79.683	Chinchilla_lanigera
ENSIPUG00000015229	xrn1	96	64.286	ENSCSAG00000011265	XRN1	99	62.279	Chlorocebus_sabaeus
ENSIPUG00000015229	xrn1	53	93.506	ENSCHOG00000013961	-	55	93.506	Choloepus_hoffmanni
ENSIPUG00000015229	xrn1	71	50.250	ENSCSAVG00000008584	-	93	50.250	Ciona_savignyi
ENSIPUG00000015229	xrn1	96	64.505	ENSCANG00000037495	XRN1	99	79.048	Colobus_angolensis_palliatus
ENSIPUG00000015229	xrn1	96	63.859	ENSCGRG00001019411	Xrn1	99	79.213	Cricetulus_griseus_chok1gshd
ENSIPUG00000015229	xrn1	96	63.859	ENSCGRG00000012464	Xrn1	99	79.213	Cricetulus_griseus_crigri
ENSIPUG00000015229	xrn1	100	63.879	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSIPUG00000015229	xrn1	68	75.972	ENSCVAG00000013089	xrn1	99	78.269	Cyprinodon_variegatus
ENSIPUG00000015229	xrn1	100	76.044	ENSDARG00000091652	xrn1	98	87.104	Danio_rerio
ENSIPUG00000015229	xrn1	99	62.298	ENSDORG00000013833	Xrn1	99	62.717	Dipodomys_ordii
ENSIPUG00000015229	xrn1	72	40.701	FBgn0020261	pcm	72	40.765	Drosophila_melanogaster
ENSIPUG00000015229	xrn1	85	71.171	ENSETEG00000003978	XRN1	88	71.901	Echinops_telfairi
ENSIPUG00000015229	xrn1	97	71.506	ENSEASG00005002687	XRN1	99	79.206	Equus_asinus_asinus
ENSIPUG00000015229	xrn1	96	63.691	ENSECAG00000008301	XRN1	99	62.134	Equus_caballus
ENSIPUG00000015229	xrn1	86	73.234	ENSEEUG00000011323	XRN1	86	73.234	Erinaceus_europaeus
ENSIPUG00000015229	xrn1	100	71.674	ENSELUG00000000169	xrn1	100	71.617	Esox_lucius
ENSIPUG00000015229	xrn1	99	59.057	ENSFCAG00000027589	XRN1	99	81.182	Felis_catus
ENSIPUG00000015229	xrn1	99	71.919	ENSFALG00000007021	XRN1	95	71.685	Ficedula_albicollis
ENSIPUG00000015229	xrn1	96	63.215	ENSFDAG00000020494	XRN1	99	79.206	Fukomys_damarensis
ENSIPUG00000015229	xrn1	88	74.245	ENSGMOG00000006396	xrn1	87	74.161	Gadus_morhua
ENSIPUG00000015229	xrn1	99	61.608	ENSGALG00000002706	XRN1	100	61.202	Gallus_gallus
ENSIPUG00000015229	xrn1	100	67.260	ENSGACG00000014328	xrn1	100	65.509	Gasterosteus_aculeatus
ENSIPUG00000015229	xrn1	95	64.187	ENSGAGG00000017535	XRN1	99	63.767	Gopherus_agassizii
ENSIPUG00000015229	xrn1	99	62.600	ENSGGOG00000008047	XRN1	99	62.407	Gorilla_gorilla
ENSIPUG00000015229	xrn1	100	68.433	ENSHBUG00000005908	xrn1	95	74.262	Haplochromis_burtoni
ENSIPUG00000015229	xrn1	99	61.327	ENSHGLG00000014476	XRN1	99	79.048	Heterocephalus_glaber_female
ENSIPUG00000015229	xrn1	99	61.327	ENSHGLG00100015130	XRN1	99	79.048	Heterocephalus_glaber_male
ENSIPUG00000015229	xrn1	95	76.233	ENSHCOG00000014062	xrn1	99	76.175	Hippocampus_comes
ENSIPUG00000015229	xrn1	97	63.294	ENSSTOG00000013552	XRN1	99	78.730	Ictidomys_tridecemlineatus
ENSIPUG00000015229	xrn1	98	61.552	ENSJJAG00000010863	Xrn1	99	77.368	Jaculus_jaculus
ENSIPUG00000015229	xrn1	99	68.109	ENSKMAG00000021356	xrn1	95	79.707	Kryptolebias_marmoratus
ENSIPUG00000015229	xrn1	100	68.862	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSIPUG00000015229	xrn1	99	62.092	ENSLACG00000009020	XRN1	99	61.867	Latimeria_chalumnae
ENSIPUG00000015229	xrn1	100	69.011	ENSLOCG00000007944	xrn1	100	68.771	Lepisosteus_oculatus
ENSIPUG00000015229	xrn1	63	73.888	ENSLAFG00000015426	XRN1	99	73.946	Loxodonta_africana
ENSIPUG00000015229	xrn1	96	64.766	ENSMFAG00000032599	XRN1	99	62.723	Macaca_fascicularis
ENSIPUG00000015229	xrn1	96	64.766	ENSMMUG00000014038	XRN1	99	62.723	Macaca_mulatta
ENSIPUG00000015229	xrn1	96	64.745	ENSMNEG00000034217	XRN1	99	62.701	Macaca_nemestrina
ENSIPUG00000015229	xrn1	96	77.389	ENSMAMG00000013219	xrn1	99	77.933	Mastacembelus_armatus
ENSIPUG00000015229	xrn1	100	68.754	ENSMZEG00005015099	xrn1	99	68.500	Maylandia_zebra
ENSIPUG00000015229	xrn1	98	60.721	ENSMGAG00000006333	XRN1	99	60.604	Meleagris_gallopavo
ENSIPUG00000015229	xrn1	97	63.912	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSIPUG00000015229	xrn1	58	79.048	ENSMOCG00000008665	Xrn1	99	79.048	Microtus_ochrogaster
ENSIPUG00000015229	xrn1	99	61.499	ENSMODG00000021236	XRN1	99	61.820	Monodelphis_domestica
ENSIPUG00000015229	xrn1	100	66.025	ENSMALG00000004098	xrn1	100	65.676	Monopterus_albus
ENSIPUG00000015229	xrn1	95	79.266	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSIPUG00000015229	xrn1	99	62.514	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSIPUG00000015229	xrn1	99	63.064	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSIPUG00000015229	xrn1	99	62.378	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSIPUG00000015229	xrn1	96	63.490	ENSMPUG00000012040	XRN1	99	62.379	Mustela_putorius_furo
ENSIPUG00000015229	xrn1	99	61.924	ENSMLUG00000016885	XRN1	99	60.716	Myotis_lucifugus
ENSIPUG00000015229	xrn1	57	75.238	ENSNGAG00000023964	Xrn1	99	75.397	Nannospalax_galili
ENSIPUG00000015229	xrn1	96	64.384	ENSNLEG00000004726	XRN1	99	62.486	Nomascus_leucogenys
ENSIPUG00000015229	xrn1	65	95.876	ENSMEUG00000014473	-	64	96.117	Notamacropus_eugenii
ENSIPUG00000015229	xrn1	73	72.263	ENSOPRG00000007337	-	73	71.533	Ochotona_princeps
ENSIPUG00000015229	xrn1	100	67.829	ENSONIG00000016673	xrn1	99	72.284	Oreochromis_niloticus
ENSIPUG00000015229	xrn1	90	69.171	ENSOANG00000006735	XRN1	94	68.826	Ornithorhynchus_anatinus
ENSIPUG00000015229	xrn1	99	61.242	ENSOCUG00000001861	XRN1	99	61.242	Oryctolagus_cuniculus
ENSIPUG00000015229	xrn1	100	69.150	ENSORLG00000013005	xrn1	98	69.441	Oryzias_latipes
ENSIPUG00000015229	xrn1	100	69.100	ENSORLG00020005559	xrn1	100	69.370	Oryzias_latipes_hni
ENSIPUG00000015229	xrn1	100	68.801	ENSORLG00015022523	xrn1	100	70.458	Oryzias_latipes_hsok
ENSIPUG00000015229	xrn1	92	79.268	ENSOMEG00000015397	xrn1	99	79.248	Oryzias_melastigma
ENSIPUG00000015229	xrn1	99	60.592	ENSOGAG00000000170	XRN1	99	60.023	Otolemur_garnettii
ENSIPUG00000015229	xrn1	99	62.357	ENSOARG00000006343	XRN1	99	62.213	Ovis_aries
ENSIPUG00000015229	xrn1	99	62.772	ENSPPAG00000010180	XRN1	99	62.579	Pan_paniscus
ENSIPUG00000015229	xrn1	99	62.680	ENSPPRG00000007125	XRN1	99	62.680	Panthera_pardus
ENSIPUG00000015229	xrn1	99	62.680	ENSPTIG00000021081	XRN1	99	62.680	Panthera_tigris_altaica
ENSIPUG00000015229	xrn1	99	62.715	ENSPTRG00000015482	XRN1	99	62.521	Pan_troglodytes
ENSIPUG00000015229	xrn1	96	64.766	ENSPANG00000010638	XRN1	99	62.665	Papio_anubis
ENSIPUG00000015229	xrn1	100	61.329	ENSPSIG00000018050	XRN1	100	60.963	Pelodiscus_sinensis
ENSIPUG00000015229	xrn1	58	81.081	ENSPMGG00000002648	xrn1	99	81.081	Periophthalmus_magnuspinnatus
ENSIPUG00000015229	xrn1	58	79.524	ENSPEMG00000020610	Xrn1	99	79.524	Peromyscus_maniculatus_bairdii
ENSIPUG00000015229	xrn1	66	52.192	ENSPMAG00000002975	xrn1	99	50.970	Petromyzon_marinus
ENSIPUG00000015229	xrn1	90	74.623	ENSPCIG00000028735	XRN1	99	79.014	Phascolarctos_cinereus
ENSIPUG00000015229	xrn1	91	71.722	ENSPFOG00000013932	xrn1	99	72.062	Poecilia_formosa
ENSIPUG00000015229	xrn1	91	72.101	ENSPLAG00000021653	xrn1	99	72.229	Poecilia_latipinna
ENSIPUG00000015229	xrn1	89	72.470	ENSPMEG00000003076	xrn1	95	72.668	Poecilia_mexicana
ENSIPUG00000015229	xrn1	100	69.039	ENSPREG00000021147	xrn1	100	69.076	Poecilia_reticulata
ENSIPUG00000015229	xrn1	99	62.707	ENSPPYG00000014172	XRN1	99	62.400	Pongo_abelii
ENSIPUG00000015229	xrn1	88	62.316	ENSPCAG00000005638	XRN1	96	61.261	Procavia_capensis
ENSIPUG00000015229	xrn1	99	62.464	ENSPCOG00000013089	XRN1	99	78.889	Propithecus_coquereli
ENSIPUG00000015229	xrn1	87	71.886	ENSPVAG00000016265	XRN1	91	71.886	Pteropus_vampyrus
ENSIPUG00000015229	xrn1	100	68.750	ENSPNYG00000010570	xrn1	99	68.728	Pundamilia_nyererei
ENSIPUG00000015229	xrn1	100	77.205	ENSPNAG00000023531	xrn1	100	77.133	Pygocentrus_nattereri
ENSIPUG00000015229	xrn1	99	62.350	ENSRNOG00000042951	Xrn1	99	62.385	Rattus_norvegicus
ENSIPUG00000015229	xrn1	96	64.183	ENSRBIG00000041227	XRN1	99	62.162	Rhinopithecus_bieti
ENSIPUG00000015229	xrn1	71	33.616	YGL173C	XRN1	73	53.261	Saccharomyces_cerevisiae
ENSIPUG00000015229	xrn1	96	63.593	ENSSBOG00000029561	XRN1	99	62.033	Saimiri_boliviensis_boliviensis
ENSIPUG00000015229	xrn1	98	67.010	ENSSHAG00000016207	XRN1	99	67.036	Sarcophilus_harrisii
ENSIPUG00000015229	xrn1	100	70.707	ENSSFOG00015024211	xrn1	100	70.714	Scleropages_formosus
ENSIPUG00000015229	xrn1	100	69.329	ENSSMAG00000016534	xrn1	100	69.195	Scophthalmus_maximus
ENSIPUG00000015229	xrn1	90	80.131	ENSSDUG00000010306	xrn1	97	80.115	Seriola_dumerili
ENSIPUG00000015229	xrn1	100	69.376	ENSSLDG00000021543	xrn1	100	68.805	Seriola_lalandi_dorsalis
ENSIPUG00000015229	xrn1	62	68.421	ENSSARG00000007741	-	75	68.421	Sorex_araneus
ENSIPUG00000015229	xrn1	100	62.272	ENSTGUG00000008498	XRN1	100	62.182	Taeniopygia_guttata
ENSIPUG00000015229	xrn1	100	65.629	ENSTRUG00000004895	xrn1	96	78.678	Takifugu_rubripes
ENSIPUG00000015229	xrn1	100	64.199	ENSTNIG00000017615	xrn1	100	64.812	Tetraodon_nigroviridis
ENSIPUG00000015229	xrn1	76	87.097	ENSTBEG00000003256	XRN1	88	73.163	Tupaia_belangeri
ENSIPUG00000015229	xrn1	99	58.405	ENSTTRG00000012914	XRN1	96	63.431	Tursiops_truncatus
ENSIPUG00000015229	xrn1	96	61.831	ENSUAMG00000001608	XRN1	99	74.921	Ursus_americanus
ENSIPUG00000015229	xrn1	96	63.317	ENSUMAG00000013625	XRN1	99	61.731	Ursus_maritimus
ENSIPUG00000015229	xrn1	97	60.461	ENSVPAG00000004690	XRN1	99	59.529	Vicugna_pacos
ENSIPUG00000015229	xrn1	96	63.831	ENSVVUG00000024461	XRN1	99	79.362	Vulpes_vulpes
ENSIPUG00000015229	xrn1	100	60.803	ENSXETG00000000619	xrn1	97	87.634	Xenopus_tropicalis
ENSIPUG00000015229	xrn1	100	68.019	ENSXCOG00000007917	xrn1	100	67.292	Xiphophorus_couchianus
ENSIPUG00000015229	xrn1	93	77.357	ENSXMAG00000018320	xrn1	99	76.954	Xiphophorus_maculatus