EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000015524 (Gene tree)
Gene ID: 108275048
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 16874 bases
Position: chr14:25167231-25184104
Accession: 108275048
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000023299	Upf2	PF04050.14	1.7e-32	1	1
ENSIPUP00000023193	Upf2	PF04050.14	1.7e-32	1	1
ENSIPUP00000023219	Upf2	PF04050.14	1.7e-32	1	1
ENSIPUP00000023171	Upf2	PF04050.14	1.7e-32	1	1
ENSIPUP00000023269	Upf2	PF04050.14	1.9e-32	1	1
ENSIPUP00000023193	MIF4G	PF02854.19	5.9e-76	1	2
ENSIPUP00000023193	MIF4G	PF02854.19	5.9e-76	2	2
ENSIPUP00000023219	MIF4G	PF02854.19	5.9e-76	1	2
ENSIPUP00000023219	MIF4G	PF02854.19	5.9e-76	2	2
ENSIPUP00000023171	MIF4G	PF02854.19	5.9e-76	1	2
ENSIPUP00000023171	MIF4G	PF02854.19	5.9e-76	2	2
ENSIPUP00000023269	MIF4G	PF02854.19	6e-76	1	2
ENSIPUP00000023269	MIF4G	PF02854.19	6e-76	2	2
ENSIPUP00000023299	MIF4G	PF02854.19	1.3e-63	1	2
ENSIPUP00000023299	MIF4G	PF02854.19	1.3e-63	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000024217	-	4420	XM_017485602	ENSIPUP00000023219	1278 (aa)	XP_017341091	W5U6S0
ENSIPUT00000024267	-	3864	-	ENSIPUP00000023269	1287 (aa)	-	-
ENSIPUT00000024188	-	4584	-	ENSIPUP00000023193	1278 (aa)	-	W5U6S0
ENSIPUT00000024297	-	3816	-	ENSIPUP00000023299	1271 (aa)	-	-
ENSIPUT00000024164	-	3837	-	ENSIPUP00000023171	1279 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000015524's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000015524's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000015524	UPF2	100	81.747	ENSG00000151461	UPF2	100	81.450	Homo_sapiens
ENSIPUG00000015524	UPF2	99	81.861	ENSAPOG00000015837	UPF2	100	83.659	Acanthochromis_polyacanthus
ENSIPUG00000015524	UPF2	100	82.436	ENSAMEG00000004586	UPF2	100	82.137	Ailuropoda_melanoleuca
ENSIPUG00000015524	UPF2	99	85.859	ENSACIG00000018078	UPF2	100	87.978	Amphilophus_citrinellus
ENSIPUG00000015524	UPF2	100	86.349	ENSAOCG00000016766	UPF2	100	88.300	Amphiprion_ocellaris
ENSIPUG00000015524	UPF2	100	86.427	ENSAPEG00000019084	UPF2	100	88.378	Amphiprion_percula
ENSIPUG00000015524	UPF2	100	88.066	ENSATEG00000021677	UPF2	99	88.231	Anabas_testudineus
ENSIPUG00000015524	UPF2	100	78.237	ENSAPLG00000010287	UPF2	91	83.090	Anas_platyrhynchos
ENSIPUG00000015524	UPF2	100	82.592	ENSACAG00000009259	UPF2	100	82.371	Anolis_carolinensis
ENSIPUG00000015524	UPF2	91	78.767	ENSANAG00000028451	UPF2	93	78.443	Aotus_nancymaae
ENSIPUG00000015524	UPF2	100	85.781	ENSACLG00000012696	UPF2	100	87.822	Astatotilapia_calliptera
ENSIPUG00000015524	UPF2	99	92.796	ENSAMXG00000013700	UPF2	99	92.796	Astyanax_mexicanus
ENSIPUG00000015524	UPF2	100	82.201	ENSBTAG00000000288	UPF2	100	81.825	Bos_taurus
ENSIPUG00000015524	UPF2	100	80.718	ENSCJAG00000020685	UPF2	100	81.123	Callithrix_jacchus
ENSIPUG00000015524	UPF2	100	82.514	ENSCAFG00000004839	UPF2	100	82.137	Canis_familiaris
ENSIPUG00000015524	UPF2	95	86.735	ENSCAFG00020005882	UPF2	98	82.891	Canis_lupus_dingo
ENSIPUG00000015524	UPF2	100	82.201	ENSCHIG00000020359	UPF2	100	81.825	Capra_hircus
ENSIPUG00000015524	UPF2	100	82.123	ENSTSYG00000000935	UPF2	97	87.571	Carlito_syrichta
ENSIPUG00000015524	UPF2	91	74.144	ENSCAPG00000016658	UPF2	95	73.356	Cavia_aperea
ENSIPUG00000015524	UPF2	98	79.236	ENSCPOG00000008809	UPF2	92	82.791	Cavia_porcellus
ENSIPUG00000015524	UPF2	100	75.644	ENSCCAG00000035991	UPF2	100	76.443	Cebus_capucinus
ENSIPUG00000015524	UPF2	100	81.825	ENSCATG00000032679	UPF2	100	81.528	Cercocebus_atys
ENSIPUG00000015524	UPF2	100	81.343	ENSCLAG00000011434	UPF2	100	80.811	Chinchilla_lanigera
ENSIPUG00000015524	UPF2	100	81.825	ENSCSAG00000013372	UPF2	100	81.528	Chlorocebus_sabaeus
ENSIPUG00000015524	UPF2	78	89.333	ENSCHOG00000000422	UPF2	81	88.444	Choloepus_hoffmanni
ENSIPUG00000015524	UPF2	99	81.861	ENSCPBG00000027823	UPF2	100	81.719	Chrysemys_picta_bellii
ENSIPUG00000015524	UPF2	78	48.479	ENSCSAVG00000007772	-	99	48.422	Ciona_savignyi
ENSIPUG00000015524	UPF2	99	76.804	ENSCANG00000040396	UPF2	100	77.127	Colobus_angolensis_palliatus
ENSIPUG00000015524	UPF2	100	82.734	ENSCGRG00001019347	Upf2	100	82.436	Cricetulus_griseus_chok1gshd
ENSIPUG00000015524	UPF2	100	82.734	ENSCGRG00000017993	Upf2	100	82.436	Cricetulus_griseus_crigri
ENSIPUG00000015524	UPF2	99	81.128	ENSCSEG00000003520	UPF2	99	78.387	Cynoglossus_semilaevis
ENSIPUG00000015524	UPF2	99	87.018	ENSCVAG00000006167	UPF2	99	87.254	Cyprinodon_variegatus
ENSIPUG00000015524	UPF2	100	82.436	ENSDNOG00000018160	UPF2	100	82.215	Dasypus_novemcinctus
ENSIPUG00000015524	UPF2	100	82.891	ENSDORG00000002478	Upf2	100	82.514	Dipodomys_ordii
ENSIPUG00000015524	UPF2	73	93.431	ENSETEG00000011583	-	62	93.182	Echinops_telfairi
ENSIPUG00000015524	UPF2	64	73.154	ENSEBUG00000012448	-	87	73.154	Eptatretus_burgeri
ENSIPUG00000015524	UPF2	100	81.655	ENSEASG00005019274	UPF2	100	81.123	Equus_asinus_asinus
ENSIPUG00000015524	UPF2	100	81.655	ENSECAG00000017022	UPF2	100	81.123	Equus_caballus
ENSIPUG00000015524	UPF2	82	75.079	ENSEEUG00000007819	UPF2	74	75.157	Erinaceus_europaeus
ENSIPUG00000015524	UPF2	99	86.573	ENSELUG00000012014	UPF2	100	87.150	Esox_lucius
ENSIPUG00000015524	UPF2	100	85.635	ENSFCAG00000005785	UPF2	100	81.981	Felis_catus
ENSIPUG00000015524	UPF2	100	82.527	ENSFALG00000001889	UPF2	98	82.761	Ficedula_albicollis
ENSIPUG00000015524	UPF2	100	81.577	ENSFDAG00000014348	UPF2	100	81.109	Fukomys_damarensis
ENSIPUG00000015524	UPF2	99	86.614	ENSFHEG00000009826	UPF2	99	86.693	Fundulus_heteroclitus
ENSIPUG00000015524	UPF2	90	87.716	ENSGMOG00000005557	UPF2	100	85.402	Gadus_morhua
ENSIPUG00000015524	UPF2	100	82.215	ENSGALG00000033772	UPF2	100	82.853	Gallus_gallus
ENSIPUG00000015524	UPF2	100	86.573	ENSGAFG00000020867	UPF2	100	86.885	Gambusia_affinis
ENSIPUG00000015524	UPF2	90	87.662	ENSGACG00000001080	UPF2	100	86.661	Gasterosteus_aculeatus
ENSIPUG00000015524	UPF2	100	82.279	ENSGAGG00000002700	UPF2	100	82.215	Gopherus_agassizii
ENSIPUG00000015524	UPF2	100	81.747	ENSGGOG00000001479	UPF2	100	81.450	Gorilla_gorilla
ENSIPUG00000015524	UPF2	100	85.714	ENSHBUG00000004249	UPF2	100	87.881	Haplochromis_burtoni
ENSIPUG00000015524	UPF2	100	80.484	ENSHGLG00000015176	-	100	80.733	Heterocephalus_glaber_female
ENSIPUG00000015524	UPF2	99	72.600	ENSHGLG00000003822	-	99	71.819	Heterocephalus_glaber_female
ENSIPUG00000015524	UPF2	99	78.873	ENSHGLG00100010036	UPF2	94	81.319	Heterocephalus_glaber_male
ENSIPUG00000015524	UPF2	100	85.614	ENSHCOG00000004025	UPF2	99	85.303	Hippocampus_comes
ENSIPUG00000015524	UPF2	100	82.422	ENSSTOG00000013075	UPF2	100	82.201	Ictidomys_tridecemlineatus
ENSIPUG00000015524	UPF2	100	81.655	ENSJJAG00000004913	Upf2	100	81.655	Jaculus_jaculus
ENSIPUG00000015524	UPF2	99	87.579	ENSKMAG00000001071	UPF2	99	87.579	Kryptolebias_marmoratus
ENSIPUG00000015524	UPF2	100	87.295	ENSLBEG00000016394	-	99	87.695	Labrus_bergylta
ENSIPUG00000015524	UPF2	80	85.380	ENSLBEG00000000728	-	94	86.160	Labrus_bergylta
ENSIPUG00000015524	UPF2	99	76.016	ENSLACG00000015945	UPF2	100	76.094	Latimeria_chalumnae
ENSIPUG00000015524	UPF2	99	85.894	ENSLOCG00000015698	UPF2	99	86.288	Lepisosteus_oculatus
ENSIPUG00000015524	UPF2	100	81.825	ENSMFAG00000043865	UPF2	100	81.528	Macaca_fascicularis
ENSIPUG00000015524	UPF2	100	81.825	ENSMMUG00000008241	UPF2	100	81.528	Macaca_mulatta
ENSIPUG00000015524	UPF2	80	82.244	ENSMNEG00000008062	UPF2	99	82.220	Macaca_nemestrina
ENSIPUG00000015524	UPF2	95	81.556	ENSMLEG00000036120	UPF2	100	82.100	Mandrillus_leucophaeus
ENSIPUG00000015524	UPF2	100	85.023	ENSMAMG00000018276	UPF2	100	87.598	Mastacembelus_armatus
ENSIPUG00000015524	UPF2	100	85.781	ENSMZEG00005021595	UPF2	100	87.822	Maylandia_zebra
ENSIPUG00000015524	UPF2	99	81.142	ENSMGAG00000004573	UPF2	99	82.017	Meleagris_gallopavo
ENSIPUG00000015524	UPF2	100	80.703	ENSMAUG00000016512	Upf2	100	80.406	Mesocricetus_auratus
ENSIPUG00000015524	UPF2	95	86.224	ENSMICG00000001716	UPF2	99	87.755	Microcebus_murinus
ENSIPUG00000015524	UPF2	100	82.656	ENSMOCG00000008263	Upf2	100	81.265	Microtus_ochrogaster
ENSIPUG00000015524	UPF2	98	84.885	ENSMMOG00000006528	UPF2	100	84.676	Mola_mola
ENSIPUG00000015524	UPF2	100	81.733	ENSMODG00000016794	UPF2	100	82.059	Monodelphis_domestica
ENSIPUG00000015524	UPF2	99	84.988	ENSMALG00000002663	UPF2	100	86.865	Monopterus_albus
ENSIPUG00000015524	UPF2	100	82.734	MGP_CAROLIEiJ_G0023157	Upf2	99	85.130	Mus_caroli
ENSIPUG00000015524	UPF2	100	82.891	ENSMUSG00000043241	Upf2	100	82.514	Mus_musculus
ENSIPUG00000015524	UPF2	100	82.734	MGP_PahariEiJ_G0019217	Upf2	100	82.987	Mus_pahari
ENSIPUG00000015524	UPF2	100	83.125	MGP_SPRETEiJ_G0024075	Upf2	100	82.987	Mus_spretus
ENSIPUG00000015524	UPF2	100	82.436	ENSMPUG00000001064	UPF2	100	82.137	Mustela_putorius_furo
ENSIPUG00000015524	UPF2	99	81.889	ENSMLUG00000000228	UPF2	100	81.669	Myotis_lucifugus
ENSIPUG00000015524	UPF2	100	85.859	ENSNBRG00000013629	UPF2	100	87.900	Neolamprologus_brichardi
ENSIPUG00000015524	UPF2	100	81.825	ENSNLEG00000012058	UPF2	100	81.528	Nomascus_leucogenys
ENSIPUG00000015524	UPF2	72	90.141	ENSOPRG00000006801	-	73	90.141	Ochotona_princeps
ENSIPUG00000015524	UPF2	100	81.513	ENSODEG00000001290	UPF2	100	80.967	Octodon_degus
ENSIPUG00000015524	UPF2	100	85.781	ENSONIG00000017991	UPF2	100	87.822	Oreochromis_niloticus
ENSIPUG00000015524	UPF2	99	81.182	ENSOCUG00000006230	UPF2	100	81.274	Oryctolagus_cuniculus
ENSIPUG00000015524	UPF2	100	87.072	ENSORLG00000017189	UPF2	100	87.305	Oryzias_latipes
ENSIPUG00000015524	UPF2	100	87.072	ENSORLG00020005969	UPF2	100	87.305	Oryzias_latipes_hni
ENSIPUG00000015524	UPF2	100	87.150	ENSORLG00015005713	UPF2	100	87.383	Oryzias_latipes_hsok
ENSIPUG00000015524	UPF2	100	84.034	ENSOMEG00000023420	UPF2	98	84.231	Oryzias_melastigma
ENSIPUG00000015524	UPF2	100	81.967	ENSOGAG00000005796	UPF2	100	81.357	Otolemur_garnettii
ENSIPUG00000015524	UPF2	100	82.073	ENSOARG00000014587	UPF2	100	81.698	Ovis_aries
ENSIPUG00000015524	UPF2	100	82.279	ENSPPRG00000000690	UPF2	100	81.981	Panthera_pardus
ENSIPUG00000015524	UPF2	100	82.279	ENSPTIG00000008867	UPF2	100	81.981	Panthera_tigris_altaica
ENSIPUG00000015524	UPF2	100	81.747	ENSPTRG00000002291	UPF2	100	81.450	Pan_troglodytes
ENSIPUG00000015524	UPF2	100	81.747	ENSPANG00000023399	UPF2	100	81.450	Papio_anubis
ENSIPUG00000015524	UPF2	100	85.101	ENSPKIG00000025502	UPF2	100	84.633	Paramormyrops_kingsleyae
ENSIPUG00000015524	UPF2	59	81.950	ENSPSIG00000015158	UPF2	95	81.555	Pelodiscus_sinensis
ENSIPUG00000015524	UPF2	99	84.832	ENSPMGG00000005259	UPF2	100	84.910	Periophthalmus_magnuspinnatus
ENSIPUG00000015524	UPF2	93	75.216	ENSPEMG00000015731	Upf2	99	74.352	Peromyscus_maniculatus_bairdii
ENSIPUG00000015524	UPF2	100	81.591	ENSPCIG00000006656	UPF2	100	81.747	Phascolarctos_cinereus
ENSIPUG00000015524	UPF2	100	87.198	ENSPFOG00000017118	UPF2	100	87.510	Poecilia_formosa
ENSIPUG00000015524	UPF2	100	87.198	ENSPLAG00000005094	UPF2	100	87.510	Poecilia_latipinna
ENSIPUG00000015524	UPF2	100	87.119	ENSPMEG00000017009	UPF2	100	87.432	Poecilia_mexicana
ENSIPUG00000015524	UPF2	99	86.474	ENSPREG00000021880	UPF2	100	86.787	Poecilia_reticulata
ENSIPUG00000015524	UPF2	66	84.679	ENSPPYG00000002089	-	100	84.223	Pongo_abelii
ENSIPUG00000015524	UPF2	100	70.203	ENSPCAG00000000684	UPF2	100	69.657	Procavia_capensis
ENSIPUG00000015524	UPF2	100	75.351	ENSPVAG00000017286	UPF2	100	74.903	Pteropus_vampyrus
ENSIPUG00000015524	UPF2	99	83.255	ENSPNYG00000017096	UPF2	100	85.301	Pundamilia_nyererei
ENSIPUG00000015524	UPF2	100	93.041	ENSPNAG00000009357	UPF2	100	93.041	Pygocentrus_nattereri
ENSIPUG00000015524	UPF2	99	78.477	ENSRNOG00000023593	Upf2	100	95.556	Rattus_norvegicus
ENSIPUG00000015524	UPF2	99	80.908	ENSRBIG00000037780	UPF2	100	80.923	Rhinopithecus_bieti
ENSIPUG00000015524	UPF2	100	81.889	ENSRROG00000043547	UPF2	100	81.903	Rhinopithecus_roxellana
ENSIPUG00000015524	UPF2	100	81.562	ENSSBOG00000020012	UPF2	100	81.577	Saimiri_boliviensis_boliviensis
ENSIPUG00000015524	UPF2	100	84.321	ENSSFOG00015023788	upf2	100	86.349	Scleropages_formosus
ENSIPUG00000015524	UPF2	90	88.215	ENSSMAG00000007637	UPF2	100	84.317	Scophthalmus_maximus
ENSIPUG00000015524	UPF2	100	86.339	ENSSDUG00000017244	UPF2	99	88.056	Seriola_dumerili
ENSIPUG00000015524	UPF2	99	84.363	ENSSLDG00000016866	UPF2	100	86.150	Seriola_lalandi_dorsalis
ENSIPUG00000015524	UPF2	100	81.343	ENSSARG00000008615	UPF2	100	80.733	Sorex_araneus
ENSIPUG00000015524	UPF2	99	80.796	ENSSPUG00000014544	UPF2	99	80.328	Sphenodon_punctatus
ENSIPUG00000015524	UPF2	68	84.651	ENSSSCG00000011117	-	99	84.554	Sus_scrofa
ENSIPUG00000015524	UPF2	99	82.473	ENSTGUG00000002163	-	100	82.408	Taeniopygia_guttata
ENSIPUG00000015524	UPF2	100	86.427	ENSTRUG00000007519	UPF2	99	86.984	Takifugu_rubripes
ENSIPUG00000015524	UPF2	100	83.502	ENSTNIG00000004453	UPF2	100	82.335	Tetraodon_nigroviridis
ENSIPUG00000015524	UPF2	93	74.516	ENSTBEG00000012679	UPF2	93	74.454	Tupaia_belangeri
ENSIPUG00000015524	UPF2	100	81.109	ENSTTRG00000016388	UPF2	100	80.811	Tursiops_truncatus
ENSIPUG00000015524	UPF2	87	95.506	ENSUAMG00000023560	UPF2	98	95.506	Ursus_americanus
ENSIPUG00000015524	UPF2	100	82.436	ENSUMAG00000012953	UPF2	95	82.137	Ursus_maritimus
ENSIPUG00000015524	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSIPUG00000015524	UPF2	100	82.514	ENSVVUG00000006166	UPF2	100	82.137	Vulpes_vulpes
ENSIPUG00000015524	UPF2	100	77.743	ENSXETG00000033103	UPF2	91	82.759	Xenopus_tropicalis
ENSIPUG00000015524	UPF2	99	86.787	ENSXCOG00000011604	UPF2	100	87.099	Xiphophorus_couchianus
ENSIPUG00000015524	UPF2	100	86.963	ENSXMAG00000017209	UPF2	100	87.276	Xiphophorus_maculatus