EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000015733 (Gene tree)
Gene ID: 108272881
Gene Symbol: DDX39B
Alias: bat1|zgc:63773
Full Name: spliceosome RNA helicase DDX39B
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 17756 bases
Position: chr12:21538789-21556544
Accession: 108272881
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000023355	ResIII	PF04851.15	1.1e-07	1	1
ENSIPUP00000023341	ResIII	PF04851.15	1.3e-07	1	1
ENSIPUP00000023355	DEAD	PF00270.29	1.2e-37	1	1
ENSIPUP00000023341	DEAD	PF00270.29	1.5e-37	1	1
ENSIPUP00000023394	DEAD	PF00270.29	1.2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000024355	-	3849	-	ENSIPUP00000023355	419 (aa)	-	-
ENSIPUT00000024395	-	1407	-	ENSIPUP00000023394	468 (aa)	-	-
ENSIPUT00000024339	-	3981	XM_017481686	ENSIPUP00000023341	463 (aa)	XP_017337175	W5UKX3

Gene Model

Click here to download ENSIPUG00000015733's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000015733's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000015733	DDX39B	80	32.718	ENSIPUG00000023912	ddx19	83	32.804
ENSIPUG00000015733	DDX39B	87	89.578	ENSIPUG00000021341	DDX39A	100	86.239
ENSIPUG00000015733	DDX39B	94	86.009	ENSIPUG00000021552	ddx39aa	100	86.009
ENSIPUG00000015733	DDX39B	75	30.214	ENSIPUG00000023024	ddx3xa	52	30.214
ENSIPUG00000015733	DDX39B	80	30.607	ENSIPUG00000005386	ddx49	78	30.607
ENSIPUG00000015733	DDX39B	82	35.789	ENSIPUG00000012823	DDX6	78	35.789
ENSIPUG00000015733	DDX39B	82	36.316	ENSIPUG00000000616	ddx6	80	36.316
ENSIPUG00000015733	DDX39B	81	30.848	ENSIPUG00000008100	Ddx59	60	30.848
ENSIPUG00000015733	DDX39B	79	37.808	ENSIPUG00000021785	eif4a3	90	37.568
ENSIPUG00000015733	DDX39B	84	37.755	ENSIPUG00000009463	EIF4A2	93	37.887
ENSIPUG00000015733	DDX39B	75	35.429	ENSIPUG00000023788	ddx47	74	35.429
ENSIPUG00000015733	DDX39B	86	37.000	ENSIPUG00000005117	if4a1	93	37.696
ENSIPUG00000015733	DDX39B	84	37.245	ENSIPUG00000012038	eif4a2	91	38.338
ENSIPUG00000015733	DDX39B	79	30.952	ENSIPUG00000022795	zgc:193690	78	30.952
ENSIPUG00000015733	DDX39B	82	36.579	ENSIPUG00000008367	-	78	36.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000015733	DDX39B	94	91.743	ENSG00000198563	DDX39B	95	96.629	Homo_sapiens
ENSIPUG00000015733	DDX39B	94	91.762	ENSAMEG00000009508	DDX39B	100	91.304	Ailuropoda_melanoleuca
ENSIPUG00000015733	DDX39B	93	92.343	ENSACIG00000004534	ddx39b	98	92.575	Amphilophus_citrinellus
ENSIPUG00000015733	DDX39B	94	93.349	ENSATEG00000012366	ddx39b	100	92.431	Anabas_testudineus
ENSIPUG00000015733	DDX39B	94	91.533	ENSACAG00000012240	DDX39B	100	90.847	Anolis_carolinensis
ENSIPUG00000015733	DDX39B	94	91.743	ENSANAG00000030372	DDX39B	100	91.284	Aotus_nancymaae
ENSIPUG00000015733	DDX39B	94	91.724	ENSACLG00000018759	ddx39b	99	91.724	Astatotilapia_calliptera
ENSIPUG00000015733	DDX39B	94	96.560	ENSAMXG00000017837	ddx39b	100	96.560	Astyanax_mexicanus
ENSIPUG00000015733	DDX39B	94	91.743	ENSBTAG00000014490	DDX39B	100	91.284	Bos_taurus
ENSIPUG00000015733	DDX39B	94	91.743	ENSCJAG00000003152	DDX39B	100	91.284	Callithrix_jacchus
ENSIPUG00000015733	DDX39B	94	92.202	ENSCAFG00000000509	DDX39B	100	95.484	Canis_familiaris
ENSIPUG00000015733	DDX39B	94	92.202	ENSCAFG00020020530	DDX39B	100	91.514	Canis_lupus_dingo
ENSIPUG00000015733	DDX39B	94	91.743	ENSCHIG00000004579	DDX39B	100	91.284	Capra_hircus
ENSIPUG00000015733	DDX39B	94	91.743	ENSTSYG00000010226	-	100	91.284	Carlito_syrichta
ENSIPUG00000015733	DDX39B	95	78.864	ENSTSYG00000029741	-	88	82.073	Carlito_syrichta
ENSIPUG00000015733	DDX39B	94	91.514	ENSCAPG00000010066	DDX39B	100	91.055	Cavia_aperea
ENSIPUG00000015733	DDX39B	94	91.514	ENSCPOG00000002335	DDX39B	100	91.055	Cavia_porcellus
ENSIPUG00000015733	DDX39B	94	91.743	ENSCCAG00000027897	DDX39B	100	91.284	Cebus_capucinus
ENSIPUG00000015733	DDX39B	94	82.448	ENSCATG00000043709	DDX39B	99	81.986	Cercocebus_atys
ENSIPUG00000015733	DDX39B	94	91.514	ENSCLAG00000014555	DDX39B	100	91.055	Chinchilla_lanigera
ENSIPUG00000015733	DDX39B	94	91.455	ENSCSAG00000008517	DDX39B	100	90.993	Chlorocebus_sabaeus
ENSIPUG00000015733	DDX39B	59	95.604	ENSCPBG00000014671	-	100	95.604	Chrysemys_picta_bellii
ENSIPUG00000015733	DDX39B	94	91.743	ENSCANG00000041217	DDX39B	100	91.284	Colobus_angolensis_palliatus
ENSIPUG00000015733	DDX39B	61	87.795	ENSCGRG00001017315	-	95	85.047	Cricetulus_griseus_chok1gshd
ENSIPUG00000015733	DDX39B	77	80.726	ENSCGRG00001021916	-	89	80.726	Cricetulus_griseus_chok1gshd
ENSIPUG00000015733	DDX39B	61	87.795	ENSCGRG00000012479	-	81	83.643	Cricetulus_griseus_crigri
ENSIPUG00000015733	DDX39B	51	84.977	ENSCGRG00000000078	-	90	84.507	Cricetulus_griseus_crigri
ENSIPUG00000015733	DDX39B	94	94.954	ENSDARG00000036069	ddx39b	100	94.725	Danio_rerio
ENSIPUG00000015733	DDX39B	94	91.743	ENSDNOG00000010215	DDX39B	100	91.284	Dasypus_novemcinctus
ENSIPUG00000015733	DDX39B	83	91.885	ENSDORG00000004985	Ddx39b	100	91.361	Dipodomys_ordii
ENSIPUG00000015733	DDX39B	83	78.796	ENSETEG00000009649	DDX39B	87	78.534	Echinops_telfairi
ENSIPUG00000015733	DDX39B	94	91.743	ENSEASG00005017156	DDX39B	100	91.284	Equus_asinus_asinus
ENSIPUG00000015733	DDX39B	94	91.743	ENSECAG00000007750	DDX39B	100	91.284	Equus_caballus
ENSIPUG00000015733	DDX39B	94	92.431	ENSELUG00000017904	ddx39b	100	91.743	Esox_lucius
ENSIPUG00000015733	DDX39B	94	91.972	ENSFCAG00000004497	DDX39B	100	91.514	Felis_catus
ENSIPUG00000015733	DDX39B	94	91.514	ENSFDAG00000011074	DDX39B	100	91.055	Fukomys_damarensis
ENSIPUG00000015733	DDX39B	68	95.570	ENSGAGG00000001300	-	80	95.570	Gopherus_agassizii
ENSIPUG00000015733	DDX39B	94	91.743	ENSGGOG00000005989	DDX39B	100	91.284	Gorilla_gorilla
ENSIPUG00000015733	DDX39B	51	86.854	ENSHBUG00000022054	-	77	87.324	Haplochromis_burtoni
ENSIPUG00000015733	DDX39B	94	91.284	ENSHGLG00000019248	DDX39B	100	91.055	Heterocephalus_glaber_female
ENSIPUG00000015733	DDX39B	94	91.284	ENSHGLG00100011850	DDX39B	100	91.055	Heterocephalus_glaber_male
ENSIPUG00000015733	DDX39B	94	91.284	ENSSTOG00000012838	DDX39B	100	90.826	Ictidomys_tridecemlineatus
ENSIPUG00000015733	DDX39B	94	91.055	ENSJJAG00000005660	-	100	90.596	Jaculus_jaculus
ENSIPUG00000015733	DDX39B	61	80.427	ENSLBEG00000017177	-	81	80.427	Labrus_bergylta
ENSIPUG00000015733	DDX39B	93	77.726	ENSLBEG00000012254	ddx39b	99	78.190	Labrus_bergylta
ENSIPUG00000015733	DDX39B	94	83.484	ENSLACG00000002110	DDX39B	100	83.484	Latimeria_chalumnae
ENSIPUG00000015733	DDX39B	94	91.514	ENSLAFG00000014202	DDX39B	100	91.055	Loxodonta_africana
ENSIPUG00000015733	DDX39B	94	91.743	ENSMFAG00000034233	DDX39B	100	91.284	Macaca_fascicularis
ENSIPUG00000015733	DDX39B	94	91.743	ENSMMUG00000008839	DDX39B	100	91.284	Macaca_mulatta
ENSIPUG00000015733	DDX39B	94	91.743	ENSMNEG00000041059	DDX39B	100	91.284	Macaca_nemestrina
ENSIPUG00000015733	DDX39B	94	91.743	ENSMLEG00000043791	DDX39B	100	91.284	Mandrillus_leucophaeus
ENSIPUG00000015733	DDX39B	94	91.954	ENSMZEG00005017654	ddx39b	99	91.954	Maylandia_zebra
ENSIPUG00000015733	DDX39B	94	91.514	ENSMAUG00000008059	Ddx39b	100	91.284	Mesocricetus_auratus
ENSIPUG00000015733	DDX39B	94	91.743	ENSMICG00000017349	DDX39B	100	91.284	Microcebus_murinus
ENSIPUG00000015733	DDX39B	94	91.514	ENSMOCG00000011169	Ddx39b	100	91.284	Microtus_ochrogaster
ENSIPUG00000015733	DDX39B	83	91.406	ENSMODG00000015791	DDX39B	88	90.885	Monodelphis_domestica
ENSIPUG00000015733	DDX39B	94	91.514	ENSMUSG00000019432	Ddx39b	100	94.595	Mus_musculus
ENSIPUG00000015733	DDX39B	94	91.514	MGP_PahariEiJ_G0020513	Ddx39b	100	94.595	Mus_pahari
ENSIPUG00000015733	DDX39B	94	91.514	MGP_SPRETEiJ_G0022424	Ddx39b	100	91.514	Mus_spretus
ENSIPUG00000015733	DDX39B	94	91.972	ENSMPUG00000011407	DDX39B	100	91.514	Mustela_putorius_furo
ENSIPUG00000015733	DDX39B	67	95.498	ENSMLUG00000001681	DDX39B	100	95.498	Myotis_lucifugus
ENSIPUG00000015733	DDX39B	94	91.743	ENSNGAG00000022948	Ddx39b	100	91.284	Nannospalax_galili
ENSIPUG00000015733	DDX39B	79	95.088	ENSNLEG00000006094	DDX39B	100	95.088	Nomascus_leucogenys
ENSIPUG00000015733	DDX39B	81	97.297	ENSMEUG00000008264	DDX39B	86	97.297	Notamacropus_eugenii
ENSIPUG00000015733	DDX39B	94	91.972	ENSOPRG00000011923	DDX39B	100	91.514	Ochotona_princeps
ENSIPUG00000015733	DDX39B	94	91.514	ENSODEG00000018083	DDX39B	100	90.826	Octodon_degus
ENSIPUG00000015733	DDX39B	94	92.661	ENSONIG00000004740	ddx39b	100	92.890	Oreochromis_niloticus
ENSIPUG00000015733	DDX39B	58	86.939	ENSOANG00000008361	DDX39B	95	86.122	Ornithorhynchus_anatinus
ENSIPUG00000015733	DDX39B	94	88.692	ENSOCUG00000024126	DDX39B	100	88.248	Oryctolagus_cuniculus
ENSIPUG00000015733	DDX39B	77	87.968	ENSOGAG00000009067	-	100	94.136	Otolemur_garnettii
ENSIPUG00000015733	DDX39B	94	90.847	ENSOGAG00000028850	-	100	90.389	Otolemur_garnettii
ENSIPUG00000015733	DDX39B	94	91.533	ENSOARG00000008787	DDX39B	98	91.076	Ovis_aries
ENSIPUG00000015733	DDX39B	94	91.743	ENSPPAG00000043072	DDX39B	100	91.284	Pan_paniscus
ENSIPUG00000015733	DDX39B	94	91.972	ENSPPRG00000001913	DDX39B	100	91.514	Panthera_pardus
ENSIPUG00000015733	DDX39B	94	91.514	ENSPTIG00000017669	DDX39B	100	91.284	Panthera_tigris_altaica
ENSIPUG00000015733	DDX39B	94	91.743	ENSPTRG00000032509	DDX39B	100	91.284	Pan_troglodytes
ENSIPUG00000015733	DDX39B	94	91.743	ENSPANG00000018609	DDX39B	100	91.284	Papio_anubis
ENSIPUG00000015733	DDX39B	94	95.423	ENSPKIG00000011324	ddx39b	100	95.423	Paramormyrops_kingsleyae
ENSIPUG00000015733	DDX39B	94	91.284	ENSPEMG00000016905	Ddx39b	100	91.284	Peromyscus_maniculatus_bairdii
ENSIPUG00000015733	DDX39B	94	91.743	ENSPCIG00000017572	DDX39B	100	91.284	Phascolarctos_cinereus
ENSIPUG00000015733	DDX39B	94	91.743	ENSPPYG00000016433	DDX39B	100	91.284	Pongo_abelii
ENSIPUG00000015733	DDX39B	61	95.070	ENSPCAG00000003484	DDX39B	100	95.070	Procavia_capensis
ENSIPUG00000015733	DDX39B	94	91.743	ENSPCOG00000018656	DDX39B	100	91.284	Propithecus_coquereli
ENSIPUG00000015733	DDX39B	94	92.202	ENSPVAG00000004653	DDX39B	100	91.514	Pteropus_vampyrus
ENSIPUG00000015733	DDX39B	92	83.178	ENSPNYG00000010382	ddx39b	98	83.527	Pundamilia_nyererei
ENSIPUG00000015733	DDX39B	94	96.560	ENSPNAG00000026926	ddx39b	100	96.560	Pygocentrus_nattereri
ENSIPUG00000015733	DDX39B	94	91.514	ENSRNOG00000000841	Ddx39b	100	91.514	Rattus_norvegicus
ENSIPUG00000015733	DDX39B	94	90.816	ENSRBIG00000031309	DDX39B	100	90.306	Rhinopithecus_bieti
ENSIPUG00000015733	DDX39B	94	91.743	ENSRROG00000039517	DDX39B	100	91.284	Rhinopithecus_roxellana
ENSIPUG00000015733	DDX39B	94	90.816	ENSSBOG00000035513	-	100	90.306	Saimiri_boliviensis_boliviensis
ENSIPUG00000015733	DDX39B	94	91.743	ENSSHAG00000003209	DDX39B	100	91.284	Sarcophilus_harrisii
ENSIPUG00000015733	DDX39B	94	95.652	ENSSFOG00015016107	ddx39b	100	95.652	Scleropages_formosus
ENSIPUG00000015733	DDX39B	94	92.890	ENSSDUG00000011557	ddx39b	100	92.890	Seriola_dumerili
ENSIPUG00000015733	DDX39B	94	92.661	ENSSLDG00000015763	ddx39b	100	92.661	Seriola_lalandi_dorsalis
ENSIPUG00000015733	DDX39B	83	80.366	ENSSARG00000005245	DDX39B	100	80.105	Sorex_araneus
ENSIPUG00000015733	DDX39B	94	91.743	ENSSPUG00000012805	DDX39B	100	90.826	Sphenodon_punctatus
ENSIPUG00000015733	DDX39B	94	91.533	ENSSSCG00000001400	DDX39B	100	95.954	Sus_scrofa
ENSIPUG00000015733	DDX39B	84	95.683	ENSTBEG00000003721	DDX39B	81	95.683	Tupaia_belangeri
ENSIPUG00000015733	DDX39B	94	84.580	ENSTTRG00000014074	DDX39B	100	84.580	Tursiops_truncatus
ENSIPUG00000015733	DDX39B	94	80.137	ENSUAMG00000027335	DDX39B	100	79.680	Ursus_americanus
ENSIPUG00000015733	DDX39B	94	83.257	ENSUMAG00000015124	DDX39B	100	82.798	Ursus_maritimus
ENSIPUG00000015733	DDX39B	59	81.818	ENSVPAG00000009167	-	74	80.165	Vicugna_pacos
ENSIPUG00000015733	DDX39B	95	92.009	ENSVVUG00000019518	DDX39B	99	91.304	Vulpes_vulpes
ENSIPUG00000015733	DDX39B	94	81.507	ENSXETG00000002498	ddx39b	99	81.050	Xenopus_tropicalis