EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000015999 (Gene tree)
Gene ID: 108271507
Gene Symbol: rad54l
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 12785 bases
Position: chr11:14267145-14279929
Accession: 108271507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000023759	ResIII	PF04851.15	6.8e-09	1	1
ENSIPUP00000023785	ResIII	PF04851.15	7.5e-09	1	1
ENSIPUP00000023785	DEAD	PF00270.29	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000024799	-	3190	XM_017479129	ENSIPUP00000023785	743 (aa)	XP_017334618	A0A2D0RVT9
ENSIPUT00000024771	-	3289	-	ENSIPUP00000023759	697 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000015999's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000015999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000015999	rad54l	84	47.659	ENSIPUG00000018531	rad54b	62	47.659

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000015999	rad54l	99	81.116	ENSG00000085999	RAD54L	100	86.667	Homo_sapiens
ENSIPUG00000015999	rad54l	99	84.770	ENSAPOG00000011643	rad54l	99	82.321	Acanthochromis_polyacanthus
ENSIPUG00000015999	rad54l	99	80.830	ENSAMEG00000013902	RAD54L	99	77.570	Ailuropoda_melanoleuca
ENSIPUG00000015999	rad54l	100	85.940	ENSACIG00000001939	rad54l	99	83.356	Amphilophus_citrinellus
ENSIPUG00000015999	rad54l	99	88.506	ENSAOCG00000017576	rad54l	100	85.849	Amphiprion_ocellaris
ENSIPUG00000015999	rad54l	99	88.218	ENSAPEG00000020658	rad54l	98	87.535	Amphiprion_percula
ENSIPUG00000015999	rad54l	100	87.518	ENSATEG00000006767	rad54l	99	87.518	Anabas_testudineus
ENSIPUG00000015999	rad54l	99	83.309	ENSAPLG00000006389	RAD54L	99	83.309	Anas_platyrhynchos
ENSIPUG00000015999	rad54l	99	83.190	ENSACAG00000002312	RAD54L	99	80.321	Anolis_carolinensis
ENSIPUG00000015999	rad54l	99	80.973	ENSANAG00000035439	RAD54L	99	77.733	Aotus_nancymaae
ENSIPUG00000015999	rad54l	100	84.792	ENSACLG00000018711	rad54l	100	81.965	Astatotilapia_calliptera
ENSIPUG00000015999	rad54l	100	92.970	ENSAMXG00000012777	rad54l	100	90.848	Astyanax_mexicanus
ENSIPUG00000015999	rad54l	99	81.545	ENSBTAG00000019901	RAD54L	99	78.562	Bos_taurus
ENSIPUG00000015999	rad54l	99	57.925	WBGene00004298	rad-54	84	57.925	Caenorhabditis_elegans
ENSIPUG00000015999	rad54l	97	81.872	ENSCJAG00000021080	RAD54L	91	79.277	Callithrix_jacchus
ENSIPUG00000015999	rad54l	99	80.687	ENSCAFG00000004272	RAD54L	99	77.467	Canis_familiaris
ENSIPUG00000015999	rad54l	99	80.687	ENSCAFG00020015066	RAD54L	99	77.437	Canis_lupus_dingo
ENSIPUG00000015999	rad54l	99	81.402	ENSCHIG00000020118	RAD54L	99	78.267	Capra_hircus
ENSIPUG00000015999	rad54l	99	80.401	ENSTSYG00000002032	RAD54L	99	77.200	Carlito_syrichta
ENSIPUG00000015999	rad54l	99	81.402	ENSCPOG00000006768	RAD54L	99	78.267	Cavia_porcellus
ENSIPUG00000015999	rad54l	99	81.259	ENSCCAG00000025783	RAD54L	99	78.000	Cebus_capucinus
ENSIPUG00000015999	rad54l	99	81.259	ENSCATG00000030589	RAD54L	99	77.867	Cercocebus_atys
ENSIPUG00000015999	rad54l	99	81.545	ENSCLAG00000004645	RAD54L	99	78.533	Chinchilla_lanigera
ENSIPUG00000015999	rad54l	99	81.116	ENSCSAG00000001229	RAD54L	99	77.733	Chlorocebus_sabaeus
ENSIPUG00000015999	rad54l	99	83.764	ENSCPBG00000005675	RAD54L	99	81.392	Chrysemys_picta_bellii
ENSIPUG00000015999	rad54l	100	65.021	ENSCING00000024456	-	100	62.452	Ciona_intestinalis
ENSIPUG00000015999	rad54l	100	64.078	ENSCSAVG00000010859	-	100	62.321	Ciona_savignyi
ENSIPUG00000015999	rad54l	99	81.259	ENSCANG00000034891	RAD54L	99	77.733	Colobus_angolensis_palliatus
ENSIPUG00000015999	rad54l	99	80.544	ENSCGRG00001014807	Rad54l	99	77.644	Cricetulus_griseus_chok1gshd
ENSIPUG00000015999	rad54l	99	80.544	ENSCGRG00000016038	Rad54l	99	77.644	Cricetulus_griseus_crigri
ENSIPUG00000015999	rad54l	97	89.021	ENSCSEG00000001983	rad54l	93	89.021	Cynoglossus_semilaevis
ENSIPUG00000015999	rad54l	82	86.378	ENSCVAG00000019561	rad54l	100	86.378	Cyprinodon_variegatus
ENSIPUG00000015999	rad54l	100	89.670	ENSDARG00000018623	rad54l	100	87.349	Danio_rerio
ENSIPUG00000015999	rad54l	99	80.401	ENSDNOG00000003395	RAD54L	99	77.333	Dasypus_novemcinctus
ENSIPUG00000015999	rad54l	97	75.439	ENSDORG00000002632	Rad54l	99	70.861	Dipodomys_ordii
ENSIPUG00000015999	rad54l	96	57.988	FBgn0002989	okr	86	57.988	Drosophila_melanogaster
ENSIPUG00000015999	rad54l	76	81.220	ENSETEG00000000550	RAD54L	78	75.758	Echinops_telfairi
ENSIPUG00000015999	rad54l	99	80.401	ENSEASG00005004511	RAD54L	96	81.045	Equus_asinus_asinus
ENSIPUG00000015999	rad54l	99	80.830	ENSECAG00000008760	RAD54L	96	81.361	Equus_caballus
ENSIPUG00000015999	rad54l	97	81.361	ENSEEUG00000008113	RAD54L	90	81.361	Erinaceus_europaeus
ENSIPUG00000015999	rad54l	100	90.272	ENSELUG00000002295	rad54l	100	87.785	Esox_lucius
ENSIPUG00000015999	rad54l	99	80.687	ENSFCAG00000003444	RAD54L	99	77.600	Felis_catus
ENSIPUG00000015999	rad54l	99	83.885	ENSFALG00000009480	RAD54L	99	81.233	Ficedula_albicollis
ENSIPUG00000015999	rad54l	99	81.259	ENSFDAG00000007806	RAD54L	99	77.867	Fukomys_damarensis
ENSIPUG00000015999	rad54l	65	83.111	ENSFHEG00000009824	rad54l	79	82.174	Fundulus_heteroclitus
ENSIPUG00000015999	rad54l	100	87.518	ENSGMOG00000014568	rad54l	100	84.906	Gadus_morhua
ENSIPUG00000015999	rad54l	99	83.597	ENSGALG00000010356	RAD54L	92	80.723	Gallus_gallus
ENSIPUG00000015999	rad54l	91	85.103	ENSGAFG00000011110	rad54l	100	82.006	Gambusia_affinis
ENSIPUG00000015999	rad54l	100	87.106	ENSGACG00000003111	rad54l	98	84.853	Gasterosteus_aculeatus
ENSIPUG00000015999	rad54l	99	83.477	ENSGAGG00000014089	RAD54L	96	81.099	Gopherus_agassizii
ENSIPUG00000015999	rad54l	99	80.830	ENSGGOG00000010602	RAD54L	99	77.600	Gorilla_gorilla
ENSIPUG00000015999	rad54l	100	84.935	ENSHBUG00000007793	rad54l	100	82.100	Haplochromis_burtoni
ENSIPUG00000015999	rad54l	99	80.973	ENSHGLG00000000753	RAD54L	99	77.867	Heterocephalus_glaber_female
ENSIPUG00000015999	rad54l	99	80.973	ENSHGLG00100016987	RAD54L	99	77.867	Heterocephalus_glaber_male
ENSIPUG00000015999	rad54l	99	80.973	ENSSTOG00000029125	RAD54L	99	77.867	Ictidomys_tridecemlineatus
ENSIPUG00000015999	rad54l	100	67.571	ENSJJAG00000000235	-	99	65.067	Jaculus_jaculus
ENSIPUG00000015999	rad54l	100	86.370	ENSKMAG00000009944	rad54l	100	83.602	Kryptolebias_marmoratus
ENSIPUG00000015999	rad54l	99	88.040	ENSLBEG00000014617	rad54l	99	88.012	Labrus_bergylta
ENSIPUG00000015999	rad54l	100	88.809	ENSLOCG00000004144	rad54l	100	88.053	Lepisosteus_oculatus
ENSIPUG00000015999	rad54l	99	80.830	ENSLAFG00000007583	RAD54L	99	77.971	Loxodonta_africana
ENSIPUG00000015999	rad54l	99	81.259	ENSMFAG00000031241	RAD54L	99	77.867	Macaca_fascicularis
ENSIPUG00000015999	rad54l	99	81.259	ENSMMUG00000011568	RAD54L	99	77.867	Macaca_mulatta
ENSIPUG00000015999	rad54l	99	81.116	ENSMNEG00000038562	RAD54L	99	77.733	Macaca_nemestrina
ENSIPUG00000015999	rad54l	99	81.259	ENSMLEG00000038145	RAD54L	99	77.867	Mandrillus_leucophaeus
ENSIPUG00000015999	rad54l	99	86.167	ENSMAMG00000022180	rad54l	99	86.854	Mastacembelus_armatus
ENSIPUG00000015999	rad54l	100	84.648	ENSMZEG00005018081	rad54l	100	81.830	Maylandia_zebra
ENSIPUG00000015999	rad54l	99	83.453	ENSMGAG00000010634	RAD54L	99	80.563	Meleagris_gallopavo
ENSIPUG00000015999	rad54l	99	81.116	ENSMAUG00000020076	Rad54l	99	78.313	Mesocricetus_auratus
ENSIPUG00000015999	rad54l	99	81.688	ENSMICG00000003266	RAD54L	99	78.533	Microcebus_murinus
ENSIPUG00000015999	rad54l	99	81.259	ENSMOCG00000001778	Rad54l	99	78.313	Microtus_ochrogaster
ENSIPUG00000015999	rad54l	100	83.931	ENSMALG00000021148	rad54l	99	80.831	Monopterus_albus
ENSIPUG00000015999	rad54l	99	76.528	MGP_CAROLIEiJ_G0026325	Rad54l	99	73.930	Mus_caroli
ENSIPUG00000015999	rad54l	99	80.687	ENSMUSG00000028702	Rad54l	99	77.600	Mus_musculus
ENSIPUG00000015999	rad54l	99	80.973	MGP_PahariEiJ_G0028657	Rad54l	99	78.104	Mus_pahari
ENSIPUG00000015999	rad54l	99	80.830	MGP_SPRETEiJ_G0027297	Rad54l	99	77.733	Mus_spretus
ENSIPUG00000015999	rad54l	99	80.714	ENSMPUG00000012883	RAD54L	99	77.467	Mustela_putorius_furo
ENSIPUG00000015999	rad54l	99	80.687	ENSMLUG00000003763	RAD54L	99	78.104	Myotis_lucifugus
ENSIPUG00000015999	rad54l	99	80.687	ENSNGAG00000024213	Rad54l	99	77.852	Nannospalax_galili
ENSIPUG00000015999	rad54l	99	80.830	ENSNLEG00000016548	RAD54L	99	77.600	Nomascus_leucogenys
ENSIPUG00000015999	rad54l	97	79.228	ENSMEUG00000006793	RAD54L	100	79.228	Notamacropus_eugenii
ENSIPUG00000015999	rad54l	90	80.352	ENSOPRG00000016016	RAD54L	90	80.139	Ochotona_princeps
ENSIPUG00000015999	rad54l	99	81.688	ENSODEG00000008519	RAD54L	99	79.333	Octodon_degus
ENSIPUG00000015999	rad54l	100	84.648	ENSONIG00000007659	rad54l	100	81.830	Oreochromis_niloticus
ENSIPUG00000015999	rad54l	99	80.544	ENSOCUG00000005229	RAD54L	99	77.600	Oryctolagus_cuniculus
ENSIPUG00000015999	rad54l	99	85.942	ENSORLG00000002958	rad54l	100	82.369	Oryzias_latipes
ENSIPUG00000015999	rad54l	99	86.167	ENSORLG00020006554	rad54l	99	86.490	Oryzias_latipes_hni
ENSIPUG00000015999	rad54l	99	86.087	ENSORLG00015002907	rad54l	100	82.574	Oryzias_latipes_hsok
ENSIPUG00000015999	rad54l	99	86.561	ENSOMEG00000007770	rad54l	99	83.288	Oryzias_melastigma
ENSIPUG00000015999	rad54l	99	81.429	ENSOARG00000002264	RAD54L	99	78.324	Ovis_aries
ENSIPUG00000015999	rad54l	99	80.830	ENSPPAG00000031222	RAD54L	99	77.600	Pan_paniscus
ENSIPUG00000015999	rad54l	99	80.687	ENSPPRG00000010317	RAD54L	99	77.600	Panthera_pardus
ENSIPUG00000015999	rad54l	99	80.687	ENSPTIG00000012200	RAD54L	99	77.600	Panthera_tigris_altaica
ENSIPUG00000015999	rad54l	99	80.830	ENSPTRG00000000689	RAD54L	99	77.600	Pan_troglodytes
ENSIPUG00000015999	rad54l	99	81.259	ENSPANG00000016295	RAD54L	99	77.867	Papio_anubis
ENSIPUG00000015999	rad54l	99	81.124	ENSPKIG00000016172	rad54l	99	79.139	Paramormyrops_kingsleyae
ENSIPUG00000015999	rad54l	99	83.885	ENSPSIG00000003258	RAD54L	97	82.378	Pelodiscus_sinensis
ENSIPUG00000015999	rad54l	99	81.609	ENSPMGG00000016335	rad54l	99	78.437	Periophthalmus_magnuspinnatus
ENSIPUG00000015999	rad54l	99	80.973	ENSPEMG00000011422	Rad54l	99	78.046	Peromyscus_maniculatus_bairdii
ENSIPUG00000015999	rad54l	99	72.872	ENSPMAG00000007719	rad54l	99	70.596	Petromyzon_marinus
ENSIPUG00000015999	rad54l	100	82.353	ENSPCIG00000029032	RAD54L	100	79.412	Phascolarctos_cinereus
ENSIPUG00000015999	rad54l	91	85.420	ENSPFOG00000013732	rad54l	99	85.420	Poecilia_formosa
ENSIPUG00000015999	rad54l	87	83.766	ENSPLAG00000023416	rad54l	99	83.766	Poecilia_latipinna
ENSIPUG00000015999	rad54l	91	85.578	ENSPMEG00000008299	rad54l	100	82.327	Poecilia_mexicana
ENSIPUG00000015999	rad54l	100	83.357	ENSPREG00000019955	rad54l	100	80.780	Poecilia_reticulata
ENSIPUG00000015999	rad54l	99	68.429	ENSPPYG00000001398	RAD54L	99	66.533	Pongo_abelii
ENSIPUG00000015999	rad54l	80	81.159	ENSPCAG00000005323	RAD54L	70	81.159	Procavia_capensis
ENSIPUG00000015999	rad54l	99	80.830	ENSPCOG00000015423	RAD54L	99	77.733	Propithecus_coquereli
ENSIPUG00000015999	rad54l	98	83.671	ENSPNYG00000002942	rad54l	96	83.671	Pundamilia_nyererei
ENSIPUG00000015999	rad54l	100	92.539	ENSPNAG00000012483	rad54l	100	90.617	Pygocentrus_nattereri
ENSIPUG00000015999	rad54l	99	80.973	ENSRNOG00000013148	Rad54l	99	77.867	Rattus_norvegicus
ENSIPUG00000015999	rad54l	99	81.259	ENSRBIG00000043495	RAD54L	99	77.867	Rhinopithecus_bieti
ENSIPUG00000015999	rad54l	99	81.259	ENSRROG00000020844	RAD54L	99	77.867	Rhinopithecus_roxellana
ENSIPUG00000015999	rad54l	81	50.736	YGL163C	RAD54	68	50.573	Saccharomyces_cerevisiae
ENSIPUG00000015999	rad54l	99	81.259	ENSSBOG00000024672	RAD54L	99	78.000	Saimiri_boliviensis_boliviensis
ENSIPUG00000015999	rad54l	100	82.403	ENSSHAG00000000110	RAD54L	100	79.494	Sarcophilus_harrisii
ENSIPUG00000015999	rad54l	100	87.948	ENSSDUG00000019147	rad54l	100	85.195	Seriola_dumerili
ENSIPUG00000015999	rad54l	100	88.092	ENSSLDG00000012330	rad54l	100	85.195	Seriola_lalandi_dorsalis
ENSIPUG00000015999	rad54l	79	84.087	ENSSARG00000006689	RAD54L	89	84.087	Sorex_araneus
ENSIPUG00000015999	rad54l	99	87.356	ENSSPAG00000011016	rad54l	100	84.409	Stegastes_partitus
ENSIPUG00000015999	rad54l	99	81.402	ENSSSCG00000003905	RAD54L	99	78.905	Sus_scrofa
ENSIPUG00000015999	rad54l	99	84.029	ENSTGUG00000008233	RAD54L	99	80.619	Taeniopygia_guttata
ENSIPUG00000015999	rad54l	97	85.420	ENSTRUG00000008410	rad54l	96	85.420	Takifugu_rubripes
ENSIPUG00000015999	rad54l	99	82.540	ENSTNIG00000004716	rad54l	99	78.658	Tetraodon_nigroviridis
ENSIPUG00000015999	rad54l	97	78.107	ENSTTRG00000006315	RAD54L	90	78.107	Tursiops_truncatus
ENSIPUG00000015999	rad54l	99	80.830	ENSUAMG00000011824	RAD54L	99	77.852	Ursus_americanus
ENSIPUG00000015999	rad54l	99	79.542	ENSUMAG00000023603	RAD54L	99	76.644	Ursus_maritimus
ENSIPUG00000015999	rad54l	99	80.544	ENSVVUG00000007201	RAD54L	99	77.333	Vulpes_vulpes
ENSIPUG00000015999	rad54l	100	76.286	ENSXETG00000004369	rad54l	99	76.096	Xenopus_tropicalis
ENSIPUG00000015999	rad54l	53	84.973	ENSXCOG00000016028	rad54l	82	84.000	Xiphophorus_couchianus