EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSIPUG00000016238 (Gene tree)
Gene ID
108268688
Gene Symbol
clp1
Alias
fa28a12|wu:fa28a12
Full Name
cleavage and polyadenylation factor I subunit 1
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Minus strand
Length
6492 bases
Position
chr8:24741271-24747762
Accession
108268688
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000024036Clp1PF06807.142.8e-2911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000025051-2444XM_017473783ENSIPUP00000024036449 (aa)XP_017329272A0A2D0RFF5
Gene Model
Click here to download ENSIPUG00000016238's gene model file
Pathways
Pathway IDPathway NameSource
ipu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016238's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000016238clp19479.097ENSG00000172409CLP19779.286Homo_sapiens
ENSIPUG00000016238clp19984.187ENSAPOG00000008242clp110084.187Acanthochromis_polyacanthus
ENSIPUG00000016238clp19479.335ENSAMEG00000014551CLP19579.524Ailuropoda_melanoleuca
ENSIPUG00000016238clp19983.296ENSACIG00000006310clp19983.296Amphilophus_citrinellus
ENSIPUG00000016238clp19984.187ENSAOCG00000010681clp19887.707Amphiprion_ocellaris
ENSIPUG00000016238clp19984.187ENSAPEG00000012165clp19887.707Amphiprion_percula
ENSIPUG00000016238clp19983.742ENSATEG00000012374clp110083.742Anabas_testudineus
ENSIPUG00000016238clp19478.622ENSACAG00000007139CLP19778.810Anolis_carolinensis
ENSIPUG00000016238clp19479.097ENSANAG00000034935CLP19779.286Aotus_nancymaae
ENSIPUG00000016238clp19983.296ENSACLG00000013573clp110083.296Astatotilapia_calliptera
ENSIPUG00000016238clp19495.000ENSAMXG00000014194clp110092.825Astyanax_mexicanus
ENSIPUG00000016238clp19479.335ENSBTAG00000006493CLP19779.524Bos_taurus
ENSIPUG00000016238clp19347.991WBGene00010304clpf-19747.991Caenorhabditis_elegans
ENSIPUG00000016238clp19479.097ENSCJAG00000008748CLP19779.286Callithrix_jacchus
ENSIPUG00000016238clp19479.335ENSCAFG00000007815CLP19779.524Canis_familiaris
ENSIPUG00000016238clp19479.335ENSCAFG00020000903CLP19779.524Canis_lupus_dingo
ENSIPUG00000016238clp19479.335ENSCHIG00000023497CLP19779.524Capra_hircus
ENSIPUG00000016238clp19876.818ENSTSYG00000006824CLP19679.286Carlito_syrichta
ENSIPUG00000016238clp19876.591ENSCAPG00000009703CLP19779.286Cavia_aperea
ENSIPUG00000016238clp19479.097ENSCPOG00000012554CLP19979.286Cavia_porcellus
ENSIPUG00000016238clp19478.860ENSCCAG00000031957CLP19779.048Cebus_capucinus
ENSIPUG00000016238clp110075.278ENSCATG00000044628CLP19779.286Cercocebus_atys
ENSIPUG00000016238clp19479.097ENSCLAG00000004094CLP19779.286Chinchilla_lanigera
ENSIPUG00000016238clp19479.097ENSCSAG00000005994CLP19779.286Chlorocebus_sabaeus
ENSIPUG00000016238clp19877.045ENSCPBG00000016843CLP19977.045Chrysemys_picta_bellii
ENSIPUG00000016238clp19361.575ENSCING00000003779-9661.575Ciona_intestinalis
ENSIPUG00000016238clp19361.722ENSCSAVG00000003437-9661.722Ciona_savignyi
ENSIPUG00000016238clp19479.097ENSCANG00000034335CLP19779.286Colobus_angolensis_palliatus
ENSIPUG00000016238clp19479.097ENSCGRG00001002227CLP19779.286Cricetulus_griseus_chok1gshd
ENSIPUG00000016238clp19479.097ENSCGRG00000004328CLP19779.286Cricetulus_griseus_crigri
ENSIPUG00000016238clp19982.405ENSCSEG00000008614clp19586.052Cynoglossus_semilaevis
ENSIPUG00000016238clp19983.964ENSCVAG00000020101clp110083.964Cyprinodon_variegatus
ENSIPUG00000016238clp19990.807ENSDARG00000063663clp110091.704Danio_rerio
ENSIPUG00000016238clp19479.048ENSDNOG00000042415CLP18779.236Dasypus_novemcinctus
ENSIPUG00000016238clp19479.335ENSDORG00000014685Clp19779.524Dipodomys_ordii
ENSIPUG00000016238clp19453.176FBgn0033842cbc9753.318Drosophila_melanogaster
ENSIPUG00000016238clp19479.097ENSETEG00000003009CLP19779.286Echinops_telfairi
ENSIPUG00000016238clp19467.221ENSEBUG00000011648clp19767.221Eptatretus_burgeri
ENSIPUG00000016238clp19479.097ENSEASG00005002093CLP19779.286Equus_asinus_asinus
ENSIPUG00000016238clp19479.097ENSECAG00000011597CLP19779.286Equus_caballus
ENSIPUG00000016238clp19478.622ENSEEUG00000012771CLP19778.810Erinaceus_europaeus
ENSIPUG00000016238clp19988.117ENSELUG00000024048clp110088.117Esox_lucius
ENSIPUG00000016238clp19479.335ENSFCAG00000006633CLP19779.524Felis_catus
ENSIPUG00000016238clp19677.546ENSFALG00000011145CLP19779.286Ficedula_albicollis
ENSIPUG00000016238clp19479.097ENSFDAG00000000234CLP19779.286Fukomys_damarensis
ENSIPUG00000016238clp19983.742ENSFHEG00000014760CLP19587.234Fundulus_heteroclitus
ENSIPUG00000016238clp19989.462ENSGMOG00000019340clp110089.238Gadus_morhua
ENSIPUG00000016238clp19678.009ENSGALG00000007370CLP19779.762Gallus_gallus
ENSIPUG00000016238clp19983.964ENSGAFG00000003020clp19787.470Gambusia_affinis
ENSIPUG00000016238clp19983.742ENSGACG00000017832clp19587.470Gasterosteus_aculeatus
ENSIPUG00000016238clp19877.273ENSGAGG00000013279CLP19977.273Gopherus_agassizii
ENSIPUG00000016238clp19479.097ENSGGOG00000023006CLP19779.286Gorilla_gorilla
ENSIPUG00000016238clp19983.519ENSHBUG00000010436clp110083.519Haplochromis_burtoni
ENSIPUG00000016238clp19479.097ENSHGLG00000009914CLP19779.286Heterocephalus_glaber_female
ENSIPUG00000016238clp19479.097ENSHGLG00100006105CLP19779.286Heterocephalus_glaber_male
ENSIPUG00000016238clp19984.633ENSHCOG00000010072clp110084.187Hippocampus_comes
ENSIPUG00000016238clp19479.335ENSSTOG00000029257CLP19779.524Ictidomys_tridecemlineatus
ENSIPUG00000016238clp19479.335ENSJJAG00000023691Clp19779.524Jaculus_jaculus
ENSIPUG00000016238clp19984.187ENSKMAG00000011990clp110084.187Kryptolebias_marmoratus
ENSIPUG00000016238clp19984.187ENSLBEG00000010201clp110084.187Labrus_bergylta
ENSIPUG00000016238clp19478.622ENSLACG00000003160CLP19778.810Latimeria_chalumnae
ENSIPUG00000016238clp17186.646ENSLOCG00000008074clp110087.578Lepisosteus_oculatus
ENSIPUG00000016238clp19478.860ENSLAFG00000014907CLP19779.048Loxodonta_africana
ENSIPUG00000016238clp19479.097ENSMFAG00000046074CLP19779.286Macaca_fascicularis
ENSIPUG00000016238clp19479.097ENSMMUG00000038007CLP19679.286Macaca_mulatta
ENSIPUG00000016238clp19479.097ENSMNEG00000000259CLP19779.286Macaca_nemestrina
ENSIPUG00000016238clp110075.278ENSMLEG00000043556CLP19779.286Mandrillus_leucophaeus
ENSIPUG00000016238clp19984.633ENSMAMG00000002149clp110084.633Mastacembelus_armatus
ENSIPUG00000016238clp19983.296ENSMZEG00005002850clp110083.296Maylandia_zebra
ENSIPUG00000016238clp19678.009ENSMGAG00000009643CLP19779.762Meleagris_gallopavo
ENSIPUG00000016238clp19478.860ENSMAUG00000016261Clp19779.048Mesocricetus_auratus
ENSIPUG00000016238clp19976.351ENSMICG00000004895CLP19779.524Microcebus_murinus
ENSIPUG00000016238clp19479.335ENSMOCG00000005498Clp19779.524Microtus_ochrogaster
ENSIPUG00000016238clp19982.851ENSMMOG00000003229clp19586.761Mola_mola
ENSIPUG00000016238clp19479.572ENSMODG00000020107-9779.762Monodelphis_domestica
ENSIPUG00000016238clp19479.572ENSMODG00000024148-9779.762Monodelphis_domestica
ENSIPUG00000016238clp19984.633ENSMALG00000014239clp110084.633Monopterus_albus
ENSIPUG00000016238clp19479.097MGP_CAROLIEiJ_G0023726Clp19779.286Mus_caroli
ENSIPUG00000016238clp19479.097ENSMUSG00000027079Clp19779.286Mus_musculus
ENSIPUG00000016238clp19479.097MGP_PahariEiJ_G0025177Clp19779.286Mus_pahari
ENSIPUG00000016238clp19479.097MGP_SPRETEiJ_G0024646Clp19779.286Mus_spretus
ENSIPUG00000016238clp19479.335ENSMPUG00000000268CLP19779.524Mustela_putorius_furo
ENSIPUG00000016238clp19479.335ENSMLUG00000007904CLP19779.524Myotis_lucifugus
ENSIPUG00000016238clp19479.097ENSNGAG00000006165Clp19779.286Nannospalax_galili
ENSIPUG00000016238clp19983.519ENSNBRG00000005225clp110083.519Neolamprologus_brichardi
ENSIPUG00000016238clp17675.000ENSNLEG00000012809-9675.904Nomascus_leucogenys
ENSIPUG00000016238clp19479.335ENSMEUG00000010949CLP19779.524Notamacropus_eugenii
ENSIPUG00000016238clp16879.085ENSOPRG00000007329CLP110079.085Ochotona_princeps
ENSIPUG00000016238clp19479.097ENSODEG00000011410CLP19779.286Octodon_degus
ENSIPUG00000016238clp19983.296ENSONIG00000005089clp110083.296Oreochromis_niloticus
ENSIPUG00000016238clp19479.335ENSOCUG00000007045CLP19779.524Oryctolagus_cuniculus
ENSIPUG00000016238clp19984.633ENSORLG00000003647clp110084.633Oryzias_latipes
ENSIPUG00000016238clp19984.410ENSORLG00020016676clp110084.410Oryzias_latipes_hni
ENSIPUG00000016238clp19984.633ENSORLG00015019484clp110084.633Oryzias_latipes_hsok
ENSIPUG00000016238clp19984.633ENSOMEG00000021303clp110084.633Oryzias_melastigma
ENSIPUG00000016238clp19479.335ENSOGAG00000004508CLP19779.524Otolemur_garnettii
ENSIPUG00000016238clp19478.385ENSOARG00000010145CLP19578.571Ovis_aries
ENSIPUG00000016238clp19479.097ENSPPAG00000041519CLP19779.286Pan_paniscus
ENSIPUG00000016238clp19479.335ENSPPRG00000006135CLP19779.524Panthera_pardus
ENSIPUG00000016238clp19479.335ENSPTIG00000015866CLP19779.524Panthera_tigris_altaica
ENSIPUG00000016238clp19479.097ENSPTRG00000047318CLP19779.286Pan_troglodytes
ENSIPUG00000016238clp110075.278ENSPANG00000017078CLP19479.286Papio_anubis
ENSIPUG00000016238clp19989.778ENSPKIG00000007697clp110090.000Paramormyrops_kingsleyae
ENSIPUG00000016238clp19374.820ENSPSIG00000005468CLP19974.820Pelodiscus_sinensis
ENSIPUG00000016238clp19984.187ENSPMGG00000012171clp19587.470Periophthalmus_magnuspinnatus
ENSIPUG00000016238clp19479.335ENSPEMG00000011213-9779.524Peromyscus_maniculatus_bairdii
ENSIPUG00000016238clp19468.884ENSPMAG00000006707clp19768.884Petromyzon_marinus
ENSIPUG00000016238clp19479.810ENSPCIG00000011899CLP19780.000Phascolarctos_cinereus
ENSIPUG00000016238clp19984.410ENSPFOG00000008169clp19587.943Poecilia_formosa
ENSIPUG00000016238clp19984.410ENSPLAG00000022388clp19787.943Poecilia_latipinna
ENSIPUG00000016238clp19984.410ENSPMEG00000021088clp19787.943Poecilia_mexicana
ENSIPUG00000016238clp19984.633ENSPREG00000017802clp19588.180Poecilia_reticulata
ENSIPUG00000016238clp15275.000ENSPPYG00000003266-10075.000Pongo_abelii
ENSIPUG00000016238clp19479.335ENSPCOG00000000360CLP19579.524Propithecus_coquereli
ENSIPUG00000016238clp19479.335ENSPVAG00000016270CLP19779.524Pteropus_vampyrus
ENSIPUG00000016238clp19983.519ENSPNYG00000017274clp19983.519Pundamilia_nyererei
ENSIPUG00000016238clp19993.722ENSPNAG00000026460clp110094.395Pygocentrus_nattereri
ENSIPUG00000016238clp19479.097ENSRNOG00000007416Clp19779.286Rattus_norvegicus
ENSIPUG00000016238clp19479.097ENSRBIG00000018191CLP19779.286Rhinopithecus_bieti
ENSIPUG00000016238clp19479.097ENSRROG00000039265CLP19779.286Rhinopithecus_roxellana
ENSIPUG00000016238clp19479.097ENSSBOG00000032517-9779.286Saimiri_boliviensis_boliviensis
ENSIPUG00000016238clp19264.251ENSSBOG00000010558-9364.251Saimiri_boliviensis_boliviensis
ENSIPUG00000016238clp19479.572ENSSHAG00000015695CLP19779.762Sarcophilus_harrisii
ENSIPUG00000016238clp19988.692ENSSFOG00015000628clp110088.914Scleropages_formosus
ENSIPUG00000016238clp19984.187ENSSMAG00000019423clp19487.707Scophthalmus_maximus
ENSIPUG00000016238clp19984.410ENSSDUG00000014495clp110084.410Seriola_dumerili
ENSIPUG00000016238clp19984.187ENSSLDG00000000937clp110084.187Seriola_lalandi_dorsalis
ENSIPUG00000016238clp15174.892ENSSARG00000002459CLP110074.892Sorex_araneus
ENSIPUG00000016238clp19876.364ENSSPUG00000016811CLP19976.364Sphenodon_punctatus
ENSIPUG00000016238clp19983.964ENSSPAG00000016052clp110083.964Stegastes_partitus
ENSIPUG00000016238clp19479.335ENSSSCG00000031442CLP19779.524Sus_scrofa
ENSIPUG00000016238clp19677.546ENSTGUG00000007002CLP19779.286Taeniopygia_guttata
ENSIPUG00000016238clp19982.183ENSTRUG00000012602clp19586.052Takifugu_rubripes
ENSIPUG00000016238clp19981.069ENSTNIG00000013125clp19584.397Tetraodon_nigroviridis
ENSIPUG00000016238clp19479.286ENSTBEG00000009975CLP19779.286Tupaia_belangeri
ENSIPUG00000016238clp19479.572ENSTTRG00000002096CLP19779.762Tursiops_truncatus
ENSIPUG00000016238clp19479.335ENSUAMG00000011388CLP19779.524Ursus_americanus
ENSIPUG00000016238clp19479.335ENSUMAG00000018317CLP19779.524Ursus_maritimus
ENSIPUG00000016238clp19976.009ENSVVUG00000017138CLP19479.524Vulpes_vulpes
ENSIPUG00000016238clp19771.198ENSXETG00000007088clp19573.333Xenopus_tropicalis
ENSIPUG00000016238clp19984.187ENSXCOG00000002287clp19587.707Xiphophorus_couchianus
ENSIPUG00000016238clp19984.187ENSXMAG00000009783clp19587.707Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us