EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016263 (Gene tree)
Gene ID: 108272787
Gene Symbol: skiv2l
Alias: fb70b07|wu:fb70b07
Full Name: Ski2 like RNA helicase
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 22864 bases
Position: chr12:21790547-21813410
Accession: 108272787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000024114	rRNA_proc-arch	PF13234.6	9.9e-28	1	1
ENSIPUP00000024060	rRNA_proc-arch	PF13234.6	1e-27	1	1
ENSIPUP00000024232	rRNA_proc-arch	PF13234.6	1e-20	1	1
ENSIPUP00000024114	DEAD	PF00270.29	6.1e-17	1	1
ENSIPUP00000024060	DEAD	PF00270.29	6.3e-17	1	1
ENSIPUP00000024232	DEAD	PF00270.29	6.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000025076	-	6160	XM_017481518	ENSIPUP00000024060	1248 (aa)	XP_017337007	A0A2D0S2M5
ENSIPUT00000025132	-	6167	-	ENSIPUP00000024114	1228 (aa)	-	-
ENSIPUT00000025255	-	3639	-	ENSIPUP00000024232	1212 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000016263's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016263's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016263	skiv2l	77	35.853	ENSIPUG00000024348	skiv2l2	89	35.751

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016263	skiv2l	100	59.904	ENSG00000204351	SKIV2L	99	59.716	Homo_sapiens
ENSIPUG00000016263	skiv2l	100	82.076	ENSAPOG00000008257	skiv2l	100	81.305	Acanthochromis_polyacanthus
ENSIPUG00000016263	skiv2l	100	59.583	ENSAMEG00000002078	SKIV2L	99	59.479	Ailuropoda_melanoleuca
ENSIPUG00000016263	skiv2l	100	80.422	ENSACIG00000016719	skiv2l	99	80.407	Amphilophus_citrinellus
ENSIPUG00000016263	skiv2l	100	82.425	ENSAOCG00000017352	skiv2l	100	82.066	Amphiprion_ocellaris
ENSIPUG00000016263	skiv2l	100	82.262	ENSAPEG00000001055	skiv2l	100	81.949	Amphiprion_percula
ENSIPUG00000016263	skiv2l	100	82.602	ENSATEG00000007601	skiv2l	100	82.160	Anabas_testudineus
ENSIPUG00000016263	skiv2l	100	62.009	ENSACAG00000011746	SKIV2L	99	62.315	Anolis_carolinensis
ENSIPUG00000016263	skiv2l	100	59.984	ENSANAG00000037992	SKIV2L	99	59.795	Aotus_nancymaae
ENSIPUG00000016263	skiv2l	100	82.750	ENSACLG00000006886	skiv2l	100	81.608	Astatotilapia_calliptera
ENSIPUG00000016263	skiv2l	100	88.527	ENSAMXG00000011517	skiv2l	100	88.231	Astyanax_mexicanus
ENSIPUG00000016263	skiv2l	100	59.342	ENSBTAG00000005587	SKIV2L	99	59.242	Bos_taurus
ENSIPUG00000016263	skiv2l	94	40.776	WBGene00008502	skih-2	96	42.194	Caenorhabditis_elegans
ENSIPUG00000016263	skiv2l	100	60.465	ENSCJAG00000002263	SKIV2L	99	60.269	Callithrix_jacchus
ENSIPUG00000016263	skiv2l	100	60.064	ENSCAFG00000000679	SKIV2L	99	59.953	Canis_familiaris
ENSIPUG00000016263	skiv2l	100	59.984	ENSCAFG00020000948	SKIV2L	99	59.874	Canis_lupus_dingo
ENSIPUG00000016263	skiv2l	100	59.663	ENSCHIG00000012897	SKIV2L	99	59.558	Capra_hircus
ENSIPUG00000016263	skiv2l	100	59.665	ENSTSYG00000012133	SKIV2L	99	59.621	Carlito_syrichta
ENSIPUG00000016263	skiv2l	100	60.064	ENSCPOG00000001307	SKIV2L	99	60.190	Cavia_porcellus
ENSIPUG00000016263	skiv2l	100	60.144	ENSCCAG00000026206	SKIV2L	99	59.953	Cebus_capucinus
ENSIPUG00000016263	skiv2l	100	60.144	ENSCATG00000036901	SKIV2L	99	60.032	Cercocebus_atys
ENSIPUG00000016263	skiv2l	100	60.144	ENSCLAG00000007678	SKIV2L	99	59.953	Chinchilla_lanigera
ENSIPUG00000016263	skiv2l	100	60.305	ENSCSAG00000008988	SKIV2L	99	60.111	Chlorocebus_sabaeus
ENSIPUG00000016263	skiv2l	87	59.563	ENSCPBG00000000343	SKIV2L	98	59.563	Chrysemys_picta_bellii
ENSIPUG00000016263	skiv2l	94	50.555	ENSCING00000005576	-	99	50.299	Ciona_intestinalis
ENSIPUG00000016263	skiv2l	100	60.144	ENSCANG00000039709	SKIV2L	100	59.382	Colobus_angolensis_palliatus
ENSIPUG00000016263	skiv2l	100	60.112	ENSCGRG00001008385	Skiv2l	99	60.127	Cricetulus_griseus_chok1gshd
ENSIPUG00000016263	skiv2l	100	80.488	ENSCSEG00000011326	skiv2l	99	80.337	Cynoglossus_semilaevis
ENSIPUG00000016263	skiv2l	100	82.276	ENSCVAG00000003072	skiv2l	100	81.680	Cyprinodon_variegatus
ENSIPUG00000016263	skiv2l	100	85.366	ENSDARG00000062206	skiv2l	100	84.948	Danio_rerio
ENSIPUG00000016263	skiv2l	93	64.424	ENSDNOG00000037590	SKIV2L	93	63.138	Dasypus_novemcinctus
ENSIPUG00000016263	skiv2l	94	45.547	FBgn0039117	tst	97	44.966	Drosophila_melanogaster
ENSIPUG00000016263	skiv2l	69	74.324	ENSETEG00000009522	SKIV2L	69	71.795	Echinops_telfairi
ENSIPUG00000016263	skiv2l	91	55.281	ENSEBUG00000013680	-	98	55.111	Eptatretus_burgeri
ENSIPUG00000016263	skiv2l	94	61.111	ENSEASG00005015534	SKIV2L	99	61.197	Equus_asinus_asinus
ENSIPUG00000016263	skiv2l	95	59.610	ENSECAG00000021823	SKIV2L	95	59.583	Equus_caballus
ENSIPUG00000016263	skiv2l	51	74.704	ENSEEUG00000005049	SKIV2L	56	74.704	Erinaceus_europaeus
ENSIPUG00000016263	skiv2l	100	83.509	ENSELUG00000000181	skiv2l	100	83.213	Esox_lucius
ENSIPUG00000016263	skiv2l	100	59.824	ENSFCAG00000004519	SKIV2L	99	59.716	Felis_catus
ENSIPUG00000016263	skiv2l	100	58.974	ENSFDAG00000009438	SKIV2L	99	58.958	Fukomys_damarensis
ENSIPUG00000016263	skiv2l	100	82.520	ENSFHEG00000008853	skiv2l	100	82.160	Fundulus_heteroclitus
ENSIPUG00000016263	skiv2l	99	79.690	ENSGMOG00000005926	skiv2l	99	79.294	Gadus_morhua
ENSIPUG00000016263	skiv2l	78	57.440	ENSGALG00000035499	SKIV2L	98	57.202	Gallus_gallus
ENSIPUG00000016263	skiv2l	100	82.276	ENSGAFG00000002382	skiv2l	100	81.920	Gambusia_affinis
ENSIPUG00000016263	skiv2l	100	80.891	ENSGACG00000002927	skiv2l	99	80.637	Gasterosteus_aculeatus
ENSIPUG00000016263	skiv2l	100	60.225	ENSGGOG00000002270	SKIV2L	99	60.032	Gorilla_gorilla
ENSIPUG00000016263	skiv2l	100	82.669	ENSHBUG00000000726	skiv2l	100	81.529	Haplochromis_burtoni
ENSIPUG00000016263	skiv2l	100	59.888	ENSHGLG00000016596	SKIV2L	99	59.779	Heterocephalus_glaber_female
ENSIPUG00000016263	skiv2l	100	58.367	ENSHGLG00100014161	SKIV2L	99	58.281	Heterocephalus_glaber_male
ENSIPUG00000016263	skiv2l	100	75.651	ENSHCOG00000007191	skiv2l	100	75.814	Hippocampus_comes
ENSIPUG00000016263	skiv2l	100	60.305	ENSSTOG00000014596	SKIV2L	99	60.111	Ictidomys_tridecemlineatus
ENSIPUG00000016263	skiv2l	56	61.565	ENSLACG00000002986	-	60	61.565	Latimeria_chalumnae
ENSIPUG00000016263	skiv2l	100	60.305	ENSLAFG00000014231	SKIV2L	99	60.190	Loxodonta_africana
ENSIPUG00000016263	skiv2l	100	60.225	ENSMFAG00000034235	SKIV2L	99	60.111	Macaca_fascicularis
ENSIPUG00000016263	skiv2l	100	60.385	ENSMMUG00000000736	SKIV2L	99	60.032	Macaca_mulatta
ENSIPUG00000016263	skiv2l	100	60.225	ENSMNEG00000044474	SKIV2L	99	60.111	Macaca_nemestrina
ENSIPUG00000016263	skiv2l	100	60.144	ENSMLEG00000030512	SKIV2L	99	60.032	Mandrillus_leucophaeus
ENSIPUG00000016263	skiv2l	100	82.683	ENSMAMG00000002927	skiv2l	100	82.080	Mastacembelus_armatus
ENSIPUG00000016263	skiv2l	100	82.669	ENSMZEG00005026415	skiv2l	100	81.529	Maylandia_zebra
ENSIPUG00000016263	skiv2l	69	51.528	ENSMGAG00000001320	SKIV2L	95	51.188	Meleagris_gallopavo
ENSIPUG00000016263	skiv2l	100	59.888	ENSMAUG00000018613	Skiv2l	99	59.464	Mesocricetus_auratus
ENSIPUG00000016263	skiv2l	100	59.648	ENSMICG00000046331	SKIV2L	99	59.621	Microcebus_murinus
ENSIPUG00000016263	skiv2l	100	58.729	ENSMOCG00000014240	Skiv2l	99	58.656	Microtus_ochrogaster
ENSIPUG00000016263	skiv2l	100	78.682	ENSMMOG00000014547	skiv2l	99	78.669	Mola_mola
ENSIPUG00000016263	skiv2l	100	60.224	ENSMODG00000015052	SKIV2L	99	60.141	Monodelphis_domestica
ENSIPUG00000016263	skiv2l	100	78.653	ENSMALG00000010535	skiv2l	99	78.365	Monopterus_albus
ENSIPUG00000016263	skiv2l	100	60.320	MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.032	Mus_caroli
ENSIPUG00000016263	skiv2l	100	60.385	ENSMUSG00000040356	Skiv2l	99	60.032	Mus_musculus
ENSIPUG00000016263	skiv2l	100	60.706	MGP_PahariEiJ_G0020472	Skiv2l	99	60.427	Mus_pahari
ENSIPUG00000016263	skiv2l	100	60.305	MGP_SPRETEiJ_G0022382	Skiv2l	99	59.953	Mus_spretus
ENSIPUG00000016263	skiv2l	100	59.984	ENSMPUG00000010567	SKIV2L	99	59.700	Mustela_putorius_furo
ENSIPUG00000016263	skiv2l	100	59.680	ENSMLUG00000000628	SKIV2L	99	59.338	Myotis_lucifugus
ENSIPUG00000016263	skiv2l	100	79.984	ENSNBRG00000018650	skiv2l	99	79.313	Neolamprologus_brichardi
ENSIPUG00000016263	skiv2l	100	59.694	ENSNLEG00000006451	SKIV2L	100	59.539	Nomascus_leucogenys
ENSIPUG00000016263	skiv2l	78	61.947	ENSMEUG00000006072	SKIV2L	78	61.947	Notamacropus_eugenii
ENSIPUG00000016263	skiv2l	100	59.663	ENSOPRG00000003972	SKIV2L	99	59.242	Ochotona_princeps
ENSIPUG00000016263	skiv2l	100	60.320	ENSODEG00000017516	SKIV2L	99	59.906	Octodon_degus
ENSIPUG00000016263	skiv2l	100	82.859	ENSONIG00000013500	skiv2l	100	81.775	Oreochromis_niloticus
ENSIPUG00000016263	skiv2l	100	60.288	ENSOCUG00000007019	SKIV2L	99	60.095	Oryctolagus_cuniculus
ENSIPUG00000016263	skiv2l	100	80.244	ENSORLG00000002021	skiv2l	100	80.336	Oryzias_latipes
ENSIPUG00000016263	skiv2l	100	80.081	ENSORLG00020009462	skiv2l	100	80.176	Oryzias_latipes_hni
ENSIPUG00000016263	skiv2l	100	80.324	ENSORLG00015016750	skiv2l	100	80.256	Oryzias_latipes_hsok
ENSIPUG00000016263	skiv2l	100	81.545	ENSOMEG00000008531	skiv2l	100	81.100	Oryzias_melastigma
ENSIPUG00000016263	skiv2l	100	60.208	ENSOGAG00000009578	SKIV2L	99	59.700	Otolemur_garnettii
ENSIPUG00000016263	skiv2l	100	56.604	ENSOARG00000002411	-	99	56.545	Ovis_aries
ENSIPUG00000016263	skiv2l	100	59.649	ENSPPAG00000040211	SKIV2L	100	59.574	Pan_paniscus
ENSIPUG00000016263	skiv2l	100	59.984	ENSPPRG00000005017	SKIV2L	99	59.874	Panthera_pardus
ENSIPUG00000016263	skiv2l	100	59.583	ENSPTIG00000021656	SKIV2L	99	59.479	Panthera_tigris_altaica
ENSIPUG00000016263	skiv2l	100	60.064	ENSPTRG00000017997	SKIV2L	99	59.874	Pan_troglodytes
ENSIPUG00000016263	skiv2l	100	59.298	ENSPANG00000011501	SKIV2L	100	59.306	Papio_anubis
ENSIPUG00000016263	skiv2l	100	78.981	ENSPKIG00000011876	skiv2l	100	78.759	Paramormyrops_kingsleyae
ENSIPUG00000016263	skiv2l	100	79.805	ENSPMGG00000019707	skiv2l	99	80.080	Periophthalmus_magnuspinnatus
ENSIPUG00000016263	skiv2l	100	59.775	ENSPEMG00000019001	Skiv2l	99	59.667	Peromyscus_maniculatus_bairdii
ENSIPUG00000016263	skiv2l	100	60.096	ENSPCIG00000018792	SKIV2L	99	60.110	Phascolarctos_cinereus
ENSIPUG00000016263	skiv2l	100	82.439	ENSPFOG00000002424	skiv2l	100	82.080	Poecilia_formosa
ENSIPUG00000016263	skiv2l	100	82.439	ENSPLAG00000018304	skiv2l	100	81.920	Poecilia_latipinna
ENSIPUG00000016263	skiv2l	100	82.439	ENSPMEG00000006997	skiv2l	100	82.080	Poecilia_mexicana
ENSIPUG00000016263	skiv2l	100	78.013	ENSPREG00000002277	skiv2l	98	83.795	Poecilia_reticulata
ENSIPUG00000016263	skiv2l	100	59.663	ENSPPYG00000016472	SKIV2L	99	59.558	Pongo_abelii
ENSIPUG00000016263	skiv2l	74	76.316	ENSPCAG00000004178	SKIV2L	74	76.316	Procavia_capensis
ENSIPUG00000016263	skiv2l	100	59.920	ENSPCOG00000010308	SKIV2L	99	59.811	Propithecus_coquereli
ENSIPUG00000016263	skiv2l	100	59.648	ENSPVAG00000005136	SKIV2L	99	59.543	Pteropus_vampyrus
ENSIPUG00000016263	skiv2l	94	84.140	ENSPNYG00000017853	skiv2l	99	84.140	Pundamilia_nyererei
ENSIPUG00000016263	skiv2l	100	89.512	ENSPNAG00000011823	skiv2l	100	89.040	Pygocentrus_nattereri
ENSIPUG00000016263	skiv2l	100	60.626	ENSRNOG00000000421	Skiv2l	99	60.348	Rattus_norvegicus
ENSIPUG00000016263	skiv2l	100	59.156	ENSRBIG00000035485	SKIV2L	99	59.166	Rhinopithecus_bieti
ENSIPUG00000016263	skiv2l	100	60.225	ENSRROG00000036429	SKIV2L	99	60.111	Rhinopithecus_roxellana
ENSIPUG00000016263	skiv2l	91	39.012	YLR398C	-	90	39.174	Saccharomyces_cerevisiae
ENSIPUG00000016263	skiv2l	100	60.545	ENSSBOG00000027920	SKIV2L	99	60.348	Saimiri_boliviensis_boliviensis
ENSIPUG00000016263	skiv2l	100	60.417	ENSSHAG00000008963	SKIV2L	99	59.184	Sarcophilus_harrisii
ENSIPUG00000016263	skiv2l	100	80.906	ENSSFOG00015016930	skiv2l	100	80.573	Scleropages_formosus
ENSIPUG00000016263	skiv2l	100	81.707	ENSSMAG00000020185	skiv2l	100	81.360	Scophthalmus_maximus
ENSIPUG00000016263	skiv2l	100	83.076	ENSSDUG00000019977	skiv2l	100	82.706	Seriola_dumerili
ENSIPUG00000016263	skiv2l	100	77.850	ENSSLDG00000024382	skiv2l	99	77.572	Seriola_lalandi_dorsalis
ENSIPUG00000016263	skiv2l	100	58.489	ENSSPUG00000012945	SKIV2L	99	58.533	Sphenodon_punctatus
ENSIPUG00000016263	skiv2l	95	81.529	ENSSPAG00000012904	skiv2l	99	81.334	Stegastes_partitus
ENSIPUG00000016263	skiv2l	100	59.743	ENSSSCG00000001424	SKIV2L	99	59.716	Sus_scrofa
ENSIPUG00000016263	skiv2l	70	83.957	ENSTRUG00000000966	skiv2l	88	83.957	Takifugu_rubripes
ENSIPUG00000016263	skiv2l	100	77.553	ENSTNIG00000004382	skiv2l	99	77.273	Tetraodon_nigroviridis
ENSIPUG00000016263	skiv2l	94	61.718	ENSTBEG00000003462	SKIV2L	94	61.718	Tupaia_belangeri
ENSIPUG00000016263	skiv2l	100	55.413	ENSTTRG00000005931	SKIV2L	99	55.450	Tursiops_truncatus
ENSIPUG00000016263	skiv2l	100	59.904	ENSUAMG00000024336	SKIV2L	99	59.795	Ursus_americanus
ENSIPUG00000016263	skiv2l	94	61.197	ENSUMAG00000012666	SKIV2L	99	61.197	Ursus_maritimus
ENSIPUG00000016263	skiv2l	100	59.984	ENSVVUG00000022807	SKIV2L	99	59.747	Vulpes_vulpes
ENSIPUG00000016263	skiv2l	100	57.853	ENSXETG00000010932	skiv2l	99	57.413	Xenopus_tropicalis
ENSIPUG00000016263	skiv2l	100	81.138	ENSXCOG00000019517	skiv2l	97	81.140	Xiphophorus_couchianus
ENSIPUG00000016263	skiv2l	100	81.538	ENSXMAG00000014079	skiv2l	100	81.265	Xiphophorus_maculatus