EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016346 (Gene tree)
Gene ID: 108273301
Gene Symbol: -
Alias: -
Full Name: transcription activator BRG1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 31406 bases
Position: chr12:6100681-6132086
Accession: 108273301
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000024245	ResIII	PF04851.15	5.1e-08	1	1
ENSIPUP00000024196	ResIII	PF04851.15	5.1e-08	1	1
ENSIPUP00000024245	BRK	PF07533.16	2.4e-16	1	1
ENSIPUP00000024196	BRK	PF07533.16	2.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000025267	-	7399	XM_017482465	ENSIPUP00000024245	1604 (aa)	XP_017337954	A0A2D0S5B6
ENSIPUT00000025215	-	7372	XM_017482462	ENSIPUP00000024196	1614 (aa)	XP_017337951	A0A2D0S5F3

Gene Model

Click here to download ENSIPUG00000016346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016346's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016346	-	99	71.587	ENSIPUG00000011060	smarca2	96	71.997
ENSIPUG00000016346	-	97	85.337	ENSIPUG00000006107	smarca4a	98	85.625

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016346	-	98	83.960	ENSG00000127616	SMARCA4	100	94.524	Homo_sapiens
ENSIPUG00000016346	-	76	89.297	ENSAPOG00000003509	smarca4a	98	88.122	Acanthochromis_polyacanthus
ENSIPUG00000016346	-	93	84.920	ENSAPOG00000004542	SMARCA4	97	87.170	Acanthochromis_polyacanthus
ENSIPUG00000016346	-	98	80.338	ENSAMEG00000010868	SMARCA4	98	81.522	Ailuropoda_melanoleuca
ENSIPUG00000016346	-	92	87.178	ENSACIG00000003035	-	95	87.559	Amphilophus_citrinellus
ENSIPUG00000016346	-	94	85.668	ENSACIG00000021550	smarca4a	96	85.678	Amphilophus_citrinellus
ENSIPUG00000016346	-	92	87.785	ENSAOCG00000009450	-	95	88.180	Amphiprion_ocellaris
ENSIPUG00000016346	-	86	84.649	ENSAOCG00000019167	smarca4a	97	84.659	Amphiprion_ocellaris
ENSIPUG00000016346	-	97	84.749	ENSAPEG00000023108	-	98	84.587	Amphiprion_percula
ENSIPUG00000016346	-	86	84.721	ENSAPEG00000015559	smarca4a	97	84.730	Amphiprion_percula
ENSIPUG00000016346	-	94	85.891	ENSATEG00000011524	smarca4a	98	85.366	Anabas_testudineus
ENSIPUG00000016346	-	99	83.645	ENSATEG00000001094	-	95	86.347	Anabas_testudineus
ENSIPUG00000016346	-	97	83.893	ENSANAG00000036991	SMARCA4	98	81.574	Aotus_nancymaae
ENSIPUG00000016346	-	92	86.703	ENSACLG00000008638	-	95	87.090	Astatotilapia_calliptera
ENSIPUG00000016346	-	94	86.597	ENSACLG00000000163	smarca4a	95	86.326	Astatotilapia_calliptera
ENSIPUG00000016346	-	94	93.680	ENSAMXG00000011238	-	96	94.737	Astyanax_mexicanus
ENSIPUG00000016346	-	96	83.974	ENSAMXG00000021023	smarca4a	96	84.635	Astyanax_mexicanus
ENSIPUG00000016346	-	98	84.509	ENSBTAG00000019220	SMARCA4	98	84.805	Bos_taurus
ENSIPUG00000016346	-	95	86.936	ENSCJAG00000005936	SMARCA4	93	87.645	Callithrix_jacchus
ENSIPUG00000016346	-	98	83.960	ENSCAFG00000017584	SMARCA4	98	84.755	Canis_familiaris
ENSIPUG00000016346	-	98	83.960	ENSCAFG00020024620	SMARCA4	98	82.934	Canis_lupus_dingo
ENSIPUG00000016346	-	98	80.818	ENSCHIG00000015318	SMARCA4	98	80.982	Capra_hircus
ENSIPUG00000016346	-	98	84.131	ENSTSYG00000012966	SMARCA4	98	84.975	Carlito_syrichta
ENSIPUG00000016346	-	92	80.461	ENSCAPG00000015932	SMARCA4	93	88.908	Cavia_aperea
ENSIPUG00000016346	-	98	84.273	ENSCPOG00000015549	SMARCA4	98	85.006	Cavia_porcellus
ENSIPUG00000016346	-	98	80.549	ENSCCAG00000031660	SMARCA4	97	81.710	Cebus_capucinus
ENSIPUG00000016346	-	98	83.960	ENSCATG00000029530	SMARCA4	98	84.755	Cercocebus_atys
ENSIPUG00000016346	-	98	84.509	ENSCLAG00000011946	SMARCA4	98	85.417	Chinchilla_lanigera
ENSIPUG00000016346	-	99	83.578	ENSCPBG00000009994	SMARCA4	98	84.293	Chrysemys_picta_bellii
ENSIPUG00000016346	-	98	83.897	ENSCANG00000036013	SMARCA4	98	84.693	Colobus_angolensis_palliatus
ENSIPUG00000016346	-	83	89.189	ENSCGRG00001016732	Smarca4	98	84.379	Cricetulus_griseus_chok1gshd
ENSIPUG00000016346	-	83	89.189	ENSCGRG00000017242	Smarca4	98	84.379	Cricetulus_griseus_crigri
ENSIPUG00000016346	-	97	83.797	ENSCSEG00000014771	smarca4a	98	84.303	Cynoglossus_semilaevis
ENSIPUG00000016346	-	94	84.720	ENSCVAG00000006979	smarca4a	97	84.557	Cyprinodon_variegatus
ENSIPUG00000016346	-	95	85.106	ENSCVAG00000003018	-	95	85.131	Cyprinodon_variegatus
ENSIPUG00000016346	-	97	85.409	ENSDARG00000077226	smarca4a	98	85.875	Danio_rerio
ENSIPUG00000016346	-	92	87.375	ENSDARG00000104339	SMARCA4	95	87.409	Danio_rerio
ENSIPUG00000016346	-	83	82.683	ENSDNOG00000048847	SMARCA4	90	90.801	Dasypus_novemcinctus
ENSIPUG00000016346	-	83	79.013	ENSDORG00000002544	Smarca4	90	80.251	Dipodomys_ordii
ENSIPUG00000016346	-	92	73.456	ENSETEG00000013361	SMARCA4	91	74.242	Echinops_telfairi
ENSIPUG00000016346	-	98	83.897	ENSEASG00005006167	SMARCA4	98	82.817	Equus_asinus_asinus
ENSIPUG00000016346	-	98	83.960	ENSECAG00000008334	SMARCA4	98	84.630	Equus_caballus
ENSIPUG00000016346	-	99	84.128	ENSELUG00000010247	smarca4a	98	84.577	Esox_lucius
ENSIPUG00000016346	-	96	81.664	ENSELUG00000023232	-	98	80.328	Esox_lucius
ENSIPUG00000016346	-	98	83.865	ENSFCAG00000004894	SMARCA4	98	84.596	Felis_catus
ENSIPUG00000016346	-	74	91.107	ENSFALG00000004208	SMARCA4	93	82.591	Ficedula_albicollis
ENSIPUG00000016346	-	90	84.452	ENSFDAG00000012237	SMARCA4	95	85.597	Fukomys_damarensis
ENSIPUG00000016346	-	97	85.309	ENSFHEG00000007902	-	98	84.114	Fundulus_heteroclitus
ENSIPUG00000016346	-	94	83.655	ENSFHEG00000010182	smarca4a	98	83.240	Fundulus_heteroclitus
ENSIPUG00000016346	-	90	83.076	ENSGMOG00000005756	-	91	82.732	Gadus_morhua
ENSIPUG00000016346	-	78	82.619	ENSGMOG00000002649	smarca4a	91	80.357	Gadus_morhua
ENSIPUG00000016346	-	71	83.520	ENSGALG00000047145	SMARCA4	97	84.111	Gallus_gallus
ENSIPUG00000016346	-	89	86.579	ENSGAFG00000014900	smarca4a	99	85.531	Gambusia_affinis
ENSIPUG00000016346	-	95	84.520	ENSGAFG00000008827	-	96	83.398	Gambusia_affinis
ENSIPUG00000016346	-	99	80.795	ENSGACG00000016033	-	98	81.635	Gasterosteus_aculeatus
ENSIPUG00000016346	-	97	83.439	ENSGACG00000006691	smarca4a	98	83.281	Gasterosteus_aculeatus
ENSIPUG00000016346	-	98	84.475	ENSGAGG00000016757	SMARCA4	98	84.451	Gopherus_agassizii
ENSIPUG00000016346	-	98	83.960	ENSGGOG00000009882	SMARCA4	98	84.755	Gorilla_gorilla
ENSIPUG00000016346	-	97	85.352	ENSHBUG00000021172	smarca4a	98	85.866	Haplochromis_burtoni
ENSIPUG00000016346	-	89	90.657	ENSHBUG00000005447	-	98	85.040	Haplochromis_burtoni
ENSIPUG00000016346	-	98	83.968	ENSHGLG00000010519	SMARCA4	98	84.928	Heterocephalus_glaber_female
ENSIPUG00000016346	-	98	84.033	ENSHGLG00100013774	SMARCA4	98	84.524	Heterocephalus_glaber_male
ENSIPUG00000016346	-	92	85.896	ENSHCOG00000009510	smarca4a	94	86.043	Hippocampus_comes
ENSIPUG00000016346	-	98	84.023	ENSSTOG00000007939	SMARCA4	98	84.755	Ictidomys_tridecemlineatus
ENSIPUG00000016346	-	98	82.014	ENSJJAG00000012877	Smarca4	98	83.036	Jaculus_jaculus
ENSIPUG00000016346	-	97	84.914	ENSKMAG00000019518	-	95	87.989	Kryptolebias_marmoratus
ENSIPUG00000016346	-	97	84.288	ENSKMAG00000011931	smarca4a	98	84.085	Kryptolebias_marmoratus
ENSIPUG00000016346	-	92	83.715	ENSLBEG00000017383	smarca4a	95	82.750	Labrus_bergylta
ENSIPUG00000016346	-	95	84.087	ENSLBEG00000020655	-	95	75.032	Labrus_bergylta
ENSIPUG00000016346	-	52	78.698	ENSLACG00000015309	SMARCA4	100	78.810	Latimeria_chalumnae
ENSIPUG00000016346	-	97	83.058	ENSLOCG00000007820	smarca4a	98	82.834	Lepisosteus_oculatus
ENSIPUG00000016346	-	98	83.865	ENSLAFG00000001433	SMARCA4	98	84.596	Loxodonta_africana
ENSIPUG00000016346	-	98	83.960	ENSMFAG00000032146	SMARCA4	97	84.693	Macaca_fascicularis
ENSIPUG00000016346	-	98	83.960	ENSMMUG00000012042	SMARCA4	97	90.319	Macaca_mulatta
ENSIPUG00000016346	-	98	83.940	ENSMNEG00000028512	SMARCA4	98	84.673	Macaca_nemestrina
ENSIPUG00000016346	-	98	84.023	ENSMLEG00000034976	SMARCA4	98	84.534	Mandrillus_leucophaeus
ENSIPUG00000016346	-	94	86.071	ENSMAMG00000009256	smarca4a	98	85.312	Mastacembelus_armatus
ENSIPUG00000016346	-	95	86.425	ENSMAMG00000002841	-	96	88.704	Mastacembelus_armatus
ENSIPUG00000016346	-	97	85.234	ENSMZEG00005003889	smarca4a	98	85.750	Maylandia_zebra
ENSIPUG00000016346	-	91	87.441	ENSMZEG00005023861	-	96	85.751	Maylandia_zebra
ENSIPUG00000016346	-	98	83.740	ENSMAUG00000020731	Smarca4	98	84.346	Mesocricetus_auratus
ENSIPUG00000016346	-	98	83.740	ENSMICG00000009806	SMARCA4	98	84.471	Microcebus_murinus
ENSIPUG00000016346	-	98	83.365	ENSMOCG00000022209	Smarca4	98	84.220	Microtus_ochrogaster
ENSIPUG00000016346	-	92	83.400	ENSMMOG00000007571	smarca4a	95	84.235	Mola_mola
ENSIPUG00000016346	-	96	84.990	ENSMMOG00000008466	-	96	84.427	Mola_mola
ENSIPUG00000016346	-	83	87.518	ENSMODG00000006287	SMARCA4	98	83.067	Monodelphis_domestica
ENSIPUG00000016346	-	97	84.801	ENSMALG00000003388	smarca4a	98	85.250	Monopterus_albus
ENSIPUG00000016346	-	86	86.055	ENSMALG00000021534	-	97	85.785	Monopterus_albus
ENSIPUG00000016346	-	98	83.709	MGP_CAROLIEiJ_G0031879	Smarca4	100	85.782	Mus_caroli
ENSIPUG00000016346	-	98	83.709	ENSMUSG00000032187	Smarca4	99	85.782	Mus_musculus
ENSIPUG00000016346	-	98	84.025	MGP_PahariEiJ_G0014745	Smarca4	100	86.245	Mus_pahari
ENSIPUG00000016346	-	98	83.709	MGP_SPRETEiJ_G0033003	Smarca4	100	85.782	Mus_spretus
ENSIPUG00000016346	-	98	83.897	ENSMPUG00000005711	SMARCA4	98	84.630	Mustela_putorius_furo
ENSIPUG00000016346	-	98	83.897	ENSMLUG00000004491	-	98	84.818	Myotis_lucifugus
ENSIPUG00000016346	-	98	84.422	ENSNGAG00000021852	Smarca4	98	84.843	Nannospalax_galili
ENSIPUG00000016346	-	92	85.394	ENSNBRG00000011457	smarca4a	94	85.304	Neolamprologus_brichardi
ENSIPUG00000016346	-	86	85.683	ENSNBRG00000018865	-	97	87.447	Neolamprologus_brichardi
ENSIPUG00000016346	-	93	81.884	ENSNLEG00000012389	SMARCA4	92	82.419	Nomascus_leucogenys
ENSIPUG00000016346	-	77	82.759	ENSOPRG00000000885	-	77	82.759	Ochotona_princeps
ENSIPUG00000016346	-	98	84.234	ENSODEG00000017127	SMARCA4	98	84.340	Octodon_degus
ENSIPUG00000016346	-	97	85.888	ENSONIG00000008196	smarca4a	98	86.192	Oreochromis_niloticus
ENSIPUG00000016346	-	89	90.934	ENSONIG00000018040	-	98	85.224	Oreochromis_niloticus
ENSIPUG00000016346	-	96	79.175	ENSOCUG00000001787	SMARCA4	95	79.598	Oryctolagus_cuniculus
ENSIPUG00000016346	-	97	83.598	ENSORLG00000015452	smarca4a	98	84.934	Oryzias_latipes
ENSIPUG00000016346	-	88	90.583	ENSORLG00000003955	-	97	85.258	Oryzias_latipes
ENSIPUG00000016346	-	88	90.533	ENSORLG00020009728	-	97	85.451	Oryzias_latipes_hni
ENSIPUG00000016346	-	97	83.344	ENSORLG00020004611	smarca4a	98	84.997	Oryzias_latipes_hni
ENSIPUG00000016346	-	97	83.344	ENSORLG00015016560	smarca4a	98	84.934	Oryzias_latipes_hsok
ENSIPUG00000016346	-	89	90.111	ENSORLG00015007739	-	97	85.381	Oryzias_latipes_hsok
ENSIPUG00000016346	-	97	84.375	ENSOMEG00000007486	smarca4a	98	84.969	Oryzias_melastigma
ENSIPUG00000016346	-	89	90.048	ENSOMEG00000016626	-	97	85.390	Oryzias_melastigma
ENSIPUG00000016346	-	72	88.879	ENSOGAG00000016148	SMARCA4	97	84.037	Otolemur_garnettii
ENSIPUG00000016346	-	98	84.436	ENSOARG00000017454	SMARCA4	98	84.606	Ovis_aries
ENSIPUG00000016346	-	98	83.960	ENSPPAG00000043191	SMARCA4	98	84.755	Pan_paniscus
ENSIPUG00000016346	-	98	83.865	ENSPPRG00000000064	SMARCA4	98	84.596	Panthera_pardus
ENSIPUG00000016346	-	80	85.478	ENSPTIG00000017447	SMARCA4	99	78.646	Panthera_tigris_altaica
ENSIPUG00000016346	-	98	83.960	ENSPTRG00000010488	SMARCA4	98	84.755	Pan_troglodytes
ENSIPUG00000016346	-	98	84.065	ENSPANG00000011042	SMARCA4	97	84.799	Papio_anubis
ENSIPUG00000016346	-	94	87.853	ENSPKIG00000010087	-	98	86.713	Paramormyrops_kingsleyae
ENSIPUG00000016346	-	95	87.443	ENSPKIG00000007770	SMARCA4	96	87.468	Paramormyrops_kingsleyae
ENSIPUG00000016346	-	97	80.762	ENSPSIG00000005547	SMARCA4	98	79.804	Pelodiscus_sinensis
ENSIPUG00000016346	-	98	83.552	ENSPEMG00000020389	Smarca4	98	84.283	Peromyscus_maniculatus_bairdii
ENSIPUG00000016346	-	83	89.474	ENSPCIG00000017138	SMARCA4	98	84.611	Phascolarctos_cinereus
ENSIPUG00000016346	-	89	89.629	ENSPFOG00000012930	-	98	83.912	Poecilia_formosa
ENSIPUG00000016346	-	97	79.495	ENSPFOG00000007892	smarca4a	98	83.136	Poecilia_formosa
ENSIPUG00000016346	-	82	92.803	ENSPLAG00000018616	-	96	87.316	Poecilia_latipinna
ENSIPUG00000016346	-	97	81.338	ENSPLAG00000014294	smarca4a	98	83.199	Poecilia_latipinna
ENSIPUG00000016346	-	80	89.311	ENSPMEG00000003725	smarca4a	94	83.683	Poecilia_mexicana
ENSIPUG00000016346	-	91	86.316	ENSPMEG00000008929	-	96	86.036	Poecilia_mexicana
ENSIPUG00000016346	-	94	82.003	ENSPREG00000014608	smarca4a	98	82.940	Poecilia_reticulata
ENSIPUG00000016346	-	84	90.532	ENSPREG00000014823	-	96	83.129	Poecilia_reticulata
ENSIPUG00000016346	-	83	87.253	ENSPPYG00000009568	SMARCA4	98	82.831	Pongo_abelii
ENSIPUG00000016346	-	79	81.457	ENSPCAG00000014054	SMARCA4	74	80.921	Procavia_capensis
ENSIPUG00000016346	-	98	83.740	ENSPCOG00000023011	SMARCA4	98	84.534	Propithecus_coquereli
ENSIPUG00000016346	-	93	74.163	ENSPVAG00000007787	SMARCA4	93	75.246	Pteropus_vampyrus
ENSIPUG00000016346	-	94	85.384	ENSPNYG00000000717	smarca4a	94	86.636	Pundamilia_nyererei
ENSIPUG00000016346	-	92	85.957	ENSPNYG00000023995	-	95	87.425	Pundamilia_nyererei
ENSIPUG00000016346	-	81	89.961	ENSPNAG00000024136	smarca4a	96	83.312	Pygocentrus_nattereri
ENSIPUG00000016346	-	95	93.506	ENSPNAG00000006636	-	94	94.153	Pygocentrus_nattereri
ENSIPUG00000016346	-	98	83.709	ENSRNOG00000009271	Smarca4	98	84.442	Rattus_norvegicus
ENSIPUG00000016346	-	98	83.584	ENSRBIG00000038696	SMARCA4	97	84.504	Rhinopithecus_bieti
ENSIPUG00000016346	-	98	83.835	ENSRROG00000045509	SMARCA4	98	84.630	Rhinopithecus_roxellana
ENSIPUG00000016346	-	98	83.709	ENSSBOG00000026896	SMARCA4	96	85.070	Saimiri_boliviensis_boliviensis
ENSIPUG00000016346	-	83	89.323	ENSSHAG00000001642	SMARCA4	98	84.485	Sarcophilus_harrisii
ENSIPUG00000016346	-	95	87.344	ENSSFOG00015013823	smarca4	96	86.528	Scleropages_formosus
ENSIPUG00000016346	-	96	82.420	ENSSFOG00015009921	-	97	84.748	Scleropages_formosus
ENSIPUG00000016346	-	97	83.719	ENSSMAG00000003200	smarca4a	98	83.911	Scophthalmus_maximus
ENSIPUG00000016346	-	97	82.748	ENSSMAG00000014082	-	98	83.364	Scophthalmus_maximus
ENSIPUG00000016346	-	95	88.417	ENSSDUG00000005388	-	96	86.244	Seriola_dumerili
ENSIPUG00000016346	-	97	81.639	ENSSDUG00000017298	smarca4a	98	81.681	Seriola_dumerili
ENSIPUG00000016346	-	92	88.612	ENSSLDG00000023663	-	95	89.169	Seriola_lalandi_dorsalis
ENSIPUG00000016346	-	97	84.639	ENSSLDG00000024486	smarca4a	98	84.768	Seriola_lalandi_dorsalis
ENSIPUG00000016346	-	63	96.894	ENSSARG00000013477	SMARCA4	84	96.894	Sorex_araneus
ENSIPUG00000016346	-	93	82.051	ENSSPUG00000004558	SMARCA4	95	82.105	Sphenodon_punctatus
ENSIPUG00000016346	-	97	84.685	ENSSPAG00000004248	smarca4a	98	84.520	Stegastes_partitus
ENSIPUG00000016346	-	97	84.752	ENSSPAG00000012533	-	98	85.048	Stegastes_partitus
ENSIPUG00000016346	-	98	84.115	ENSSSCG00000013629	SMARCA4	98	84.731	Sus_scrofa
ENSIPUG00000016346	-	52	84.788	ENSTGUG00000015488	-	99	84.570	Taeniopygia_guttata
ENSIPUG00000016346	-	93	83.852	ENSTRUG00000001378	SMARCA4	95	84.740	Takifugu_rubripes
ENSIPUG00000016346	-	87	80.748	ENSTRUG00000004885	smarca4a	97	80.999	Takifugu_rubripes
ENSIPUG00000016346	-	73	84.043	ENSTNIG00000004859	-	100	84.452	Tetraodon_nigroviridis
ENSIPUG00000016346	-	97	84.397	ENSTNIG00000004536	SMARCA4	98	84.596	Tetraodon_nigroviridis
ENSIPUG00000016346	-	98	81.192	ENSTTRG00000009519	SMARCA4	98	82.042	Tursiops_truncatus
ENSIPUG00000016346	-	98	83.960	ENSUAMG00000014661	SMARCA4	98	84.693	Ursus_americanus
ENSIPUG00000016346	-	93	82.345	ENSUMAG00000022005	SMARCA4	99	89.569	Ursus_maritimus
ENSIPUG00000016346	-	98	83.960	ENSVVUG00000017820	SMARCA4	95	84.755	Vulpes_vulpes
ENSIPUG00000016346	-	96	80.605	ENSXETG00000009355	smarca4	98	79.815	Xenopus_tropicalis
ENSIPUG00000016346	-	95	85.677	ENSXCOG00000013494	-	96	85.438	Xiphophorus_couchianus
ENSIPUG00000016346	-	95	86.024	ENSXMAG00000007030	-	98	84.294	Xiphophorus_maculatus
ENSIPUG00000016346	-	97	82.872	ENSXMAG00000006321	smarca4a	98	83.012	Xiphophorus_maculatus