EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000016620 (Gene tree)
Gene ID
100304497
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Minus strand
Length
23709 bases
Position
chr9:28079414-28103122
Accession
100304497
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000024600PABPPF00658.181.1e-3111
ENSIPUP00000024600RRM_5PF13893.61.9e-0811
ENSIPUP00000024600RRM_1PF00076.225.9e-9014
ENSIPUP00000024600RRM_1PF00076.225.9e-9024
ENSIPUP00000024600RRM_1PF00076.225.9e-9034
ENSIPUP00000024600RRM_1PF00076.225.9e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000025631-3082XM_017476711ENSIPUP00000024600634 (aa)XP_017332200A0A2D0RQH6
Gene Model
Click here to download ENSIPUG00000016620's gene model file
Pathways
Pathway IDPathway NameSource
ipu03013RNA transportKEGG
ipu03015mRNA surveillance pathwayKEGG
ipu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016620's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000016620pabpc49874.322ENSIPUG00000010791-9774.277
ENSIPUG00000016620pabpc45862.644ENSIPUG00000006780-9657.286
ENSIPUG00000016620pabpc46032.903ENSIPUG00000015781elavl1b8832.903
ENSIPUG00000016620pabpc45237.500ENSIPUG00000008622celf25038.372
ENSIPUG00000016620pabpc49869.401ENSIPUG00000012602pabpc1l9969.427
ENSIPUG00000016620pabpc45641.429ENSIPUG00000001757rbms2a5134.737
ENSIPUG00000016620pabpc45355.333ENSIPUG00000020086-8555.333
ENSIPUG00000016620pabpc45931.788ENSIPUG00000012337elavl28131.788
ENSIPUG00000016620pabpc46160.881ENSIPUG00000021244-5560.881
ENSIPUG00000016620pabpc45068.595ENSIPUG00000024435-8568.595
ENSIPUG00000016620pabpc46847.917ENSIPUG00000024284-9447.917
ENSIPUG00000016620pabpc46847.059ENSIPUG00000019895-6342.727
ENSIPUG00000016620pabpc48355.882ENSIPUG00000018724-6855.882
ENSIPUG00000016620pabpc45862.069ENSIPUG00000006760-8862.069
ENSIPUG00000016620pabpc49975.667ENSIPUG00000008848pabpc1a9875.955
ENSIPUG00000016620pabpc45834.940ENSIPUG00000001381elavl48134.940
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000016620pabpc49983.176ENSG00000090621PABPC410096.899Homo_sapiens
ENSIPUG00000016620pabpc49992.652ENSAPOG00000001161pabpc49792.742Acanthochromis_polyacanthus
ENSIPUG00000016620pabpc49848.892ENSAMEG00000015083-9749.114Ailuropoda_melanoleuca
ENSIPUG00000016620pabpc49980.180ENSAMEG00000011535-9879.755Ailuropoda_melanoleuca
ENSIPUG00000016620pabpc410092.271ENSACIG00000023343pabpc49793.065Amphilophus_citrinellus
ENSIPUG00000016620pabpc49992.332ENSAOCG00000021529pabpc49792.419Amphiprion_ocellaris
ENSIPUG00000016620pabpc49992.332ENSAPEG00000019196pabpc49792.419Amphiprion_percula
ENSIPUG00000016620pabpc49991.879ENSATEG00000007402pabpc49792.110Anabas_testudineus
ENSIPUG00000016620pabpc49985.354ENSAPLG00000009729-9885.233Anas_platyrhynchos
ENSIPUG00000016620pabpc49984.397ENSACAG00000002544PABPC49884.239Anolis_carolinensis
ENSIPUG00000016620pabpc49983.176ENSANAG00000025079PABPC49883.146Aotus_nancymaae
ENSIPUG00000016620pabpc410091.956ENSACLG00000019558pabpc49792.742Astatotilapia_calliptera
ENSIPUG00000016620pabpc410088.189ENSAMXG00000018779pabpc49888.889Astyanax_mexicanus
ENSIPUG00000016620pabpc49980.799ENSBTAG00000017125PABPC49880.691Bos_taurus
ENSIPUG00000016620pabpc45785.030ENSBTAG00000048536-9385.030Bos_taurus
ENSIPUG00000016620pabpc48070.455ENSCJAG00000045953-9768.939Callithrix_jacchus
ENSIPUG00000016620pabpc49983.333ENSCJAG00000002512-9883.307Callithrix_jacchus
ENSIPUG00000016620pabpc49983.333ENSCAFG00000003081PABPC49883.307Canis_familiaris
ENSIPUG00000016620pabpc49980.330ENSCAFG00020004161PABPC49879.908Canis_lupus_dingo
ENSIPUG00000016620pabpc49980.330ENSCHIG00000019398-9879.755Capra_hircus
ENSIPUG00000016620pabpc49964.697ENSCHIG00000023385-9865.238Capra_hircus
ENSIPUG00000016620pabpc49983.333ENSTSYG00000006532PABPC49883.307Carlito_syrichta
ENSIPUG00000016620pabpc49981.171ENSCAPG00000015984PABPC49882.797Cavia_aperea
ENSIPUG00000016620pabpc49981.106ENSCPOG00000009552PABPC49883.173Cavia_porcellus
ENSIPUG00000016620pabpc49983.176ENSCCAG00000037306PABPC49883.146Cebus_capucinus
ENSIPUG00000016620pabpc49983.176ENSCATG00000042164PABPC49883.146Cercocebus_atys
ENSIPUG00000016620pabpc49980.952ENSCLAG00000011899PABPC49883.146Chinchilla_lanigera
ENSIPUG00000016620pabpc49980.330ENSCSAG00000001135PABPC49879.755Chlorocebus_sabaeus
ENSIPUG00000016620pabpc48588.564ENSCHOG00000005327PABPC47788.949Choloepus_hoffmanni
ENSIPUG00000016620pabpc49986.142ENSCPBG00000001038PABPC49886.035Chrysemys_picta_bellii
ENSIPUG00000016620pabpc49983.094ENSCANG00000034177PABPC49883.062Colobus_angolensis_palliatus
ENSIPUG00000016620pabpc49882.560ENSCGRG00001018166Pabpc49782.448Cricetulus_griseus_chok1gshd
ENSIPUG00000016620pabpc49882.468ENSCGRG00000009777Pabpc49782.353Cricetulus_griseus_crigri
ENSIPUG00000016620pabpc49991.125ENSCSEG00000000130pabpc49791.613Cynoglossus_semilaevis
ENSIPUG00000016620pabpc49991.520ENSCVAG00000019246pabpc49892.308Cyprinodon_variegatus
ENSIPUG00000016620pabpc49994.258ENSDARG00000059259pabpc410094.215Danio_rerio
ENSIPUG00000016620pabpc49981.770ENSDNOG00000018444-9881.703Dasypus_novemcinctus
ENSIPUG00000016620pabpc49980.828ENSDORG00000011581Pabpc49881.289Dipodomys_ordii
ENSIPUG00000016620pabpc49995.312ENSETEG00000018453-8295.312Echinops_telfairi
ENSIPUG00000016620pabpc48552.747ENSETEG00000009172-9752.311Echinops_telfairi
ENSIPUG00000016620pabpc49977.179ENSEBUG00000000992pabpc49977.207Eptatretus_burgeri
ENSIPUG00000016620pabpc49777.796ENSEBUG00000013782pabpc49877.778Eptatretus_burgeri
ENSIPUG00000016620pabpc49980.480ENSEASG00005014119PABPC49879.908Equus_asinus_asinus
ENSIPUG00000016620pabpc49980.480ENSECAG00000009396PABPC49879.908Equus_caballus
ENSIPUG00000016620pabpc49879.141ENSEEUG00000002962PABPC49879.141Erinaceus_europaeus
ENSIPUG00000016620pabpc49891.680ENSELUG00000003195pabpc49791.761Esox_lucius
ENSIPUG00000016620pabpc49983.333ENSFCAG00000015254-9883.307Felis_catus
ENSIPUG00000016620pabpc49985.827ENSFALG00000000543PABPC49885.714Ficedula_albicollis
ENSIPUG00000016620pabpc49979.699ENSFDAG00000020016-9879.755Fukomys_damarensis
ENSIPUG00000016620pabpc48951.271ENSFDAG00000010581-9848.810Fukomys_damarensis
ENSIPUG00000016620pabpc410091.009ENSFHEG00000007548pabpc49791.935Fundulus_heteroclitus
ENSIPUG00000016620pabpc49988.626ENSGMOG00000019025pabpc49789.211Gadus_morhua
ENSIPUG00000016620pabpc49985.984ENSGALG00000003800PABPC49885.875Gallus_gallus
ENSIPUG00000016620pabpc49995.933ENSGAFG00000018195pabpc49898.333Gambusia_affinis
ENSIPUG00000016620pabpc410089.590ENSGACG00000007179pabpc49790.821Gasterosteus_aculeatus
ENSIPUG00000016620pabpc49986.299ENSGAGG00000001888PABPC49886.196Gopherus_agassizii
ENSIPUG00000016620pabpc49983.176ENSGGOG00000004002PABPC49883.146Gorilla_gorilla
ENSIPUG00000016620pabpc410091.798ENSHBUG00000020206pabpc49792.581Haplochromis_burtoni
ENSIPUG00000016620pabpc49980.952ENSHGLG00000011162PABPC49883.013Heterocephalus_glaber_female
ENSIPUG00000016620pabpc49980.952ENSHGLG00100001580PABPC49883.013Heterocephalus_glaber_male
ENSIPUG00000016620pabpc410089.590ENSHCOG00000012694pabpc49791.452Hippocampus_comes
ENSIPUG00000016620pabpc49982.492ENSSTOG00000010416PABPC49882.448Ictidomys_tridecemlineatus
ENSIPUG00000016620pabpc49979.969ENSJJAG00000007781Pabpc49879.843Jaculus_jaculus
ENSIPUG00000016620pabpc410090.581ENSKMAG00000013597pabpc49790.982Kryptolebias_marmoratus
ENSIPUG00000016620pabpc49991.125ENSLBEG00000013654pabpc49791.599Labrus_bergylta
ENSIPUG00000016620pabpc49986.950ENSLACG00000011907PABPC49887.019Latimeria_chalumnae
ENSIPUG00000016620pabpc49991.139ENSLOCG00000001877pabpc49791.922Lepisosteus_oculatus
ENSIPUG00000016620pabpc49982.650ENSLAFG00000000151PABPC49882.609Loxodonta_africana
ENSIPUG00000016620pabpc49983.176ENSMFAG00000041481PABPC49883.146Macaca_fascicularis
ENSIPUG00000016620pabpc49980.330ENSMMUG00000007497PABPC49879.755Macaca_mulatta
ENSIPUG00000016620pabpc49983.176ENSMNEG00000043054PABPC49883.146Macaca_nemestrina
ENSIPUG00000016620pabpc49983.176ENSMLEG00000040716PABPC49883.146Mandrillus_leucophaeus
ENSIPUG00000016620pabpc49992.663ENSMAMG00000010025pabpc49892.231Mastacembelus_armatus
ENSIPUG00000016620pabpc410091.798ENSMZEG00005006141pabpc49792.581Maylandia_zebra
ENSIPUG00000016620pabpc49981.757ENSMGAG00000005408PABPC49881.379Meleagris_gallopavo
ENSIPUG00000016620pabpc47277.619ENSMAUG00000001295-9776.667Mesocricetus_auratus
ENSIPUG00000016620pabpc45780.702ENSMAUG00000004089-9280.702Mesocricetus_auratus
ENSIPUG00000016620pabpc47689.583ENSMAUG00000019763-8190.217Mesocricetus_auratus
ENSIPUG00000016620pabpc48982.948ENSMICG00000016633-10082.238Microcebus_murinus
ENSIPUG00000016620pabpc49972.792ENSMICG00000036729-9871.379Microcebus_murinus
ENSIPUG00000016620pabpc49982.137ENSMOCG00000006763Pabpc49783.146Microtus_ochrogaster
ENSIPUG00000016620pabpc410088.854ENSMMOG00000002363pabpc49788.264Mola_mola
ENSIPUG00000016620pabpc45970.667ENSMODG00000018051-9670.667Monodelphis_domestica
ENSIPUG00000016620pabpc49883.205ENSMODG00000017657-9882.589Monodelphis_domestica
ENSIPUG00000016620pabpc49991.892ENSMALG00000011017pabpc49792.122Monopterus_albus
ENSIPUG00000016620pabpc49979.098MGP_CAROLIEiJ_G0026435-10097.163Mus_caroli
ENSIPUG00000016620pabpc49870.154MGP_CAROLIEiJ_G0024864-9872.272Mus_caroli
ENSIPUG00000016620pabpc49982.019ENSMUSG00000011257Pabpc410096.429Mus_musculus
ENSIPUG00000016620pabpc49979.268MGP_PahariEiJ_G0028765Pabpc410097.872Mus_pahari
ENSIPUG00000016620pabpc49970.588MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSIPUG00000016620pabpc49980.480ENSMPUG00000014414-9879.908Mustela_putorius_furo
ENSIPUG00000016620pabpc49545.964ENSMPUG00000006836-10045.305Mustela_putorius_furo
ENSIPUG00000016620pabpc49982.177ENSMLUG00000012068PABPC49882.287Myotis_lucifugus
ENSIPUG00000016620pabpc49982.650ENSNGAG00000018292Pabpc49882.609Nannospalax_galili
ENSIPUG00000016620pabpc45997.596ENSNBRG00000009708pabpc49897.596Neolamprologus_brichardi
ENSIPUG00000016620pabpc46598.795ENSNBRG00000010047-7298.795Neolamprologus_brichardi
ENSIPUG00000016620pabpc49983.176ENSNLEG00000011928PABPC49883.146Nomascus_leucogenys
ENSIPUG00000016620pabpc48490.476ENSOPRG00000011984PABPC48690.476Ochotona_princeps
ENSIPUG00000016620pabpc49973.333ENSODEG00000017434-9773.707Octodon_degus
ENSIPUG00000016620pabpc45383.571ENSODEG00000013457-10083.571Octodon_degus
ENSIPUG00000016620pabpc49981.960ENSODEG00000006592-9882.853Octodon_degus
ENSIPUG00000016620pabpc410091.956ENSONIG00000008176pabpc49792.742Oreochromis_niloticus
ENSIPUG00000016620pabpc49985.669ENSOANG00000010001PABPC49885.554Ornithorhynchus_anatinus
ENSIPUG00000016620pabpc49581.034ENSOCUG00000000562PABPC48879.906Oryctolagus_cuniculus
ENSIPUG00000016620pabpc49994.444ENSORLG00000017479pabpc49694.444Oryzias_latipes
ENSIPUG00000016620pabpc49894.444ENSORLG00020018644pabpc49694.444Oryzias_latipes_hni
ENSIPUG00000016620pabpc49994.444ENSORLG00015015042pabpc49694.444Oryzias_latipes_hsok
ENSIPUG00000016620pabpc49891.026ENSOMEG00000014410pabpc49790.968Oryzias_melastigma
ENSIPUG00000016620pabpc49980.828ENSOGAG00000004067PABPC49880.751Otolemur_garnettii
ENSIPUG00000016620pabpc49980.330ENSOARG00000020060PABPC49879.755Ovis_aries
ENSIPUG00000016620pabpc49983.176ENSPPAG00000043625PABPC49883.146Pan_paniscus
ENSIPUG00000016620pabpc49983.333ENSPPRG00000024727PABPC49883.307Panthera_pardus
ENSIPUG00000016620pabpc49983.333ENSPTIG00000005829PABPC49883.307Panthera_tigris_altaica
ENSIPUG00000016620pabpc49983.176ENSPTRG00000000573PABPC49883.146Pan_troglodytes
ENSIPUG00000016620pabpc49983.176ENSPANG00000009484PABPC49883.146Papio_anubis
ENSIPUG00000016620pabpc49991.930ENSPKIG00000025356pabpc49891.763Paramormyrops_kingsleyae
ENSIPUG00000016620pabpc49986.772ENSPSIG00000016892PABPC49886.677Pelodiscus_sinensis
ENSIPUG00000016620pabpc410087.855ENSPMGG00000009073pabpc49788.226Periophthalmus_magnuspinnatus
ENSIPUG00000016620pabpc410081.135ENSPEMG00000023569-9882.986Peromyscus_maniculatus_bairdii
ENSIPUG00000016620pabpc410079.719ENSPEMG00000024193-9879.426Peromyscus_maniculatus_bairdii
ENSIPUG00000016620pabpc48974.826ENSPMAG00000002836pabpc410075.347Petromyzon_marinus
ENSIPUG00000016620pabpc49672.279ENSPMAG00000007885pabpc49871.020Petromyzon_marinus
ENSIPUG00000016620pabpc49886.035ENSPCIG00000020674PABPC49893.447Phascolarctos_cinereus
ENSIPUG00000016620pabpc410090.536ENSPFOG00000002682pabpc49791.452Poecilia_formosa
ENSIPUG00000016620pabpc410090.536ENSPLAG00000010112pabpc49791.452Poecilia_latipinna
ENSIPUG00000016620pabpc49991.534ENSPMEG00000019739pabpc49791.613Poecilia_mexicana
ENSIPUG00000016620pabpc410090.852ENSPREG00000001589pabpc49791.613Poecilia_reticulata
ENSIPUG00000016620pabpc49980.330ENSPPYG00000001506PABPC49879.755Pongo_abelii
ENSIPUG00000016620pabpc49975.676ENSPCAG00000003341PABPC49875.000Procavia_capensis
ENSIPUG00000016620pabpc49967.539ENSPCOG00000025882-9285.227Propithecus_coquereli
ENSIPUG00000016620pabpc49982.759ENSPCOG00000023725-9883.013Propithecus_coquereli
ENSIPUG00000016620pabpc49878.333ENSPVAG00000002187PABPC49878.194Pteropus_vampyrus
ENSIPUG00000016620pabpc410091.956ENSPNYG00000006134pabpc49792.742Pundamilia_nyererei
ENSIPUG00000016620pabpc410094.331ENSPNAG00000024355pabpc49895.330Pygocentrus_nattereri
ENSIPUG00000016620pabpc49980.368ENSRNOG00000015642Pabpc49881.132Rattus_norvegicus
ENSIPUG00000016620pabpc49978.221ENSRNOG00000028592AABR07035074.19878.931Rattus_norvegicus
ENSIPUG00000016620pabpc49983.176ENSRBIG00000039761PABPC49883.146Rhinopithecus_bieti
ENSIPUG00000016620pabpc49983.176ENSRROG00000033355PABPC49883.146Rhinopithecus_roxellana
ENSIPUG00000016620pabpc49983.176ENSSBOG00000026193PABPC49883.146Saimiri_boliviensis_boliviensis
ENSIPUG00000016620pabpc49886.035ENSSHAG00000018139PABPC49885.393Sarcophilus_harrisii
ENSIPUG00000016620pabpc49991.830ENSSFOG00015023514pabpc49792.605Scleropages_formosus
ENSIPUG00000016620pabpc49990.665ENSSMAG00000009007pabpc49791.452Scophthalmus_maximus
ENSIPUG00000016620pabpc49992.026ENSSDUG00000012683pabpc49792.258Seriola_dumerili
ENSIPUG00000016620pabpc49992.026ENSSLDG00000013025pabpc49792.258Seriola_lalandi_dorsalis
ENSIPUG00000016620pabpc49973.574ENSSARG00000000310PABPC49872.853Sorex_araneus
ENSIPUG00000016620pabpc49985.624ENSSPUG00000003204PABPC49885.668Sphenodon_punctatus
ENSIPUG00000016620pabpc49992.504ENSSPAG00000009252pabpc49792.742Stegastes_partitus
ENSIPUG00000016620pabpc49983.333ENSSSCG00000003660-9883.307Sus_scrofa
ENSIPUG00000016620pabpc48942.707ENSSSCG00000036170-9242.134Sus_scrofa
ENSIPUG00000016620pabpc49981.166ENSTGUG00000001266PABPC49881.957Taeniopygia_guttata
ENSIPUG00000016620pabpc410090.424ENSTRUG00000005907pabpc49790.806Takifugu_rubripes
ENSIPUG00000016620pabpc410084.772ENSTNIG00000016902pabpc49784.839Tetraodon_nigroviridis
ENSIPUG00000016620pabpc49968.885ENSTBEG00000009035PABPC49867.973Tupaia_belangeri
ENSIPUG00000016620pabpc49959.507ENSTTRG00000014340PABPC49867.121Tursiops_truncatus
ENSIPUG00000016620pabpc49983.333ENSUAMG00000000303PABPC49883.307Ursus_americanus
ENSIPUG00000016620pabpc49987.783ENSUMAG00000019585PABPC49892.135Ursus_maritimus
ENSIPUG00000016620pabpc47870.796ENSVPAG00000010041PABPC47370.796Vicugna_pacos
ENSIPUG00000016620pabpc49983.333ENSVVUG00000005215PABPC49883.307Vulpes_vulpes
ENSIPUG00000016620pabpc49982.677ENSXETG00000010946pabpc49882.665Xenopus_tropicalis
ENSIPUG00000016620pabpc46797.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSIPUG00000016620pabpc49995.778ENSXCOG00000013190pabpc49694.811Xiphophorus_couchianus
ENSIPUG00000016620pabpc410090.694ENSXMAG00000019007pabpc49791.452Xiphophorus_maculatus

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