EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016678 (Gene tree)
Gene ID: 108260452
Gene Symbol: si:ch211-11k18.4 (1 of many)
Alias: -
Full Name: uncharacterized LOC108260452
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5787 bases
Position: chr2:5685860-5691646
Accession: 108260452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000024664	MMR_HSR1	PF01926.23	5.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000025696	-	1221	XM_017460768	ENSIPUP00000024664	406 (aa)	XP_017316257	-

Gene Model

Click here to download ENSIPUG00000016678's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016678's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016678	si:ch211-11k18.4	90	79.781	ENSIPUG00000016694	si:ch211-11k18.4	80	79.781
ENSIPUG00000016678	si:ch211-11k18.4	97	58.195	ENSIPUG00000019981	si:dkey-98f17.5	96	58.140

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016678	si:ch211-11k18.4	99	60.138	ENSAPOG00000010378	si:dkey-98f17.5	96	60.138	Acanthochromis_polyacanthus
ENSIPUG00000016678	si:ch211-11k18.4	99	84.653	ENSAPOG00000018833	si:ch211-11k18.4	95	84.653	Acanthochromis_polyacanthus
ENSIPUG00000016678	si:ch211-11k18.4	98	76.887	ENSACIG00000006696	si:ch211-11k18.4	96	76.852	Amphilophus_citrinellus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.584	ENSACIG00000017719	si:dkey-98f17.5	96	59.584	Amphilophus_citrinellus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.277	ENSAOCG00000008661	si:dkey-98f17.5	96	60.277	Amphiprion_ocellaris
ENSIPUG00000016678	si:ch211-11k18.4	99	79.630	ENSAOCG00000014284	si:ch211-11k18.4	96	79.167	Amphiprion_ocellaris
ENSIPUG00000016678	si:ch211-11k18.4	99	60.277	ENSAPEG00000022447	si:dkey-98f17.5	96	60.277	Amphiprion_percula
ENSIPUG00000016678	si:ch211-11k18.4	100	78.802	ENSAPEG00000014910	si:ch211-11k18.4	96	78.984	Amphiprion_percula
ENSIPUG00000016678	si:ch211-11k18.4	99	76.443	ENSATEG00000004775	si:ch211-11k18.4	96	76.389	Anabas_testudineus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.908	ENSATEG00000007188	si:dkey-98f17.5	96	60.046	Anabas_testudineus
ENSIPUG00000016678	si:ch211-11k18.4	98	62.617	ENSACAG00000028632	-	94	62.150	Anolis_carolinensis
ENSIPUG00000016678	si:ch211-11k18.4	99	60.277	ENSACLG00000001308	si:dkey-98f17.5	96	60.277	Astatotilapia_calliptera
ENSIPUG00000016678	si:ch211-11k18.4	99	78.704	ENSACLG00000007907	si:ch211-11k18.4	96	78.704	Astatotilapia_calliptera
ENSIPUG00000016678	si:ch211-11k18.4	99	80.556	ENSAMXG00000017817	si:ch211-11k18.4	96	80.556	Astyanax_mexicanus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.815	ENSAMXG00000001190	si:dkey-98f17.5	96	59.815	Astyanax_mexicanus
ENSIPUG00000016678	si:ch211-11k18.4	93	62.269	ENSCING00000020807	-	99	62.269	Ciona_intestinalis
ENSIPUG00000016678	si:ch211-11k18.4	100	58.391	ENSCSAVG00000009987	-	97	58.161	Ciona_savignyi
ENSIPUG00000016678	si:ch211-11k18.4	99	60.046	ENSCSEG00000017512	si:dkey-98f17.5	91	61.578	Cynoglossus_semilaevis
ENSIPUG00000016678	si:ch211-11k18.4	99	76.540	ENSCSEG00000017661	si:ch211-11k18.4	96	76.303	Cynoglossus_semilaevis
ENSIPUG00000016678	si:ch211-11k18.4	98	81.566	ENSCVAG00000015346	si:ch211-11k18.4	95	81.683	Cyprinodon_variegatus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.739	ENSCVAG00000011351	si:dkey-98f17.5	96	60.739	Cyprinodon_variegatus
ENSIPUG00000016678	si:ch211-11k18.4	99	79.398	ENSDARG00000087869	si:ch211-11k18.4	100	90.306	Danio_rerio
ENSIPUG00000016678	si:ch211-11k18.4	99	59.584	ENSDARG00000068863	si:dkey-98f17.5	98	59.584	Danio_rerio
ENSIPUG00000016678	si:ch211-11k18.4	91	59.239	ENSEBUG00000007620	si:dkey-98f17.5	98	59.239	Eptatretus_burgeri
ENSIPUG00000016678	si:ch211-11k18.4	99	58.756	ENSELUG00000003365	si:dkey-98f17.5	96	58.661	Esox_lucius
ENSIPUG00000016678	si:ch211-11k18.4	99	77.546	ENSFHEG00000019820	si:ch211-11k18.4	96	77.546	Fundulus_heteroclitus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.908	ENSFHEG00000012744	si:dkey-98f17.5	96	60.046	Fundulus_heteroclitus
ENSIPUG00000016678	si:ch211-11k18.4	90	75.204	ENSGMOG00000003492	si:ch211-11k18.4	91	75.204	Gadus_morhua
ENSIPUG00000016678	si:ch211-11k18.4	99	75.463	ENSGAFG00000005677	si:ch211-11k18.4	96	75.463	Gambusia_affinis
ENSIPUG00000016678	si:ch211-11k18.4	99	59.353	ENSGAFG00000012362	si:dkey-98f17.5	86	59.353	Gambusia_affinis
ENSIPUG00000016678	si:ch211-11k18.4	90	84.699	ENSGACG00000013134	si:ch211-11k18.4	91	84.699	Gasterosteus_aculeatus
ENSIPUG00000016678	si:ch211-11k18.4	64	73.846	ENSGACG00000009399	si:dkey-98f17.5	100	73.846	Gasterosteus_aculeatus
ENSIPUG00000016678	si:ch211-11k18.4	99	78.935	ENSHBUG00000020638	si:ch211-11k18.4	96	78.935	Haplochromis_burtoni
ENSIPUG00000016678	si:ch211-11k18.4	99	60.508	ENSHBUG00000008331	si:dkey-98f17.5	96	60.508	Haplochromis_burtoni
ENSIPUG00000016678	si:ch211-11k18.4	89	66.482	ENSHCOG00000016505	si:dkey-98f17.5	81	66.482	Hippocampus_comes
ENSIPUG00000016678	si:ch211-11k18.4	99	77.778	ENSHCOG00000014773	si:ch211-11k18.4	96	77.778	Hippocampus_comes
ENSIPUG00000016678	si:ch211-11k18.4	99	58.986	ENSKMAG00000014997	si:dkey-98f17.5	96	59.122	Kryptolebias_marmoratus
ENSIPUG00000016678	si:ch211-11k18.4	99	76.157	ENSKMAG00000009327	si:ch211-11k18.4	96	75.926	Kryptolebias_marmoratus
ENSIPUG00000016678	si:ch211-11k18.4	99	58.661	ENSLBEG00000012756	si:dkey-98f17.5	96	59.815	Labrus_bergylta
ENSIPUG00000016678	si:ch211-11k18.4	99	61.894	ENSLACG00000004899	-	96	61.894	Latimeria_chalumnae
ENSIPUG00000016678	si:ch211-11k18.4	99	67.206	ENSLACG00000006280	si:ch211-11k18.4	96	67.436	Latimeria_chalumnae
ENSIPUG00000016678	si:ch211-11k18.4	98	58.548	ENSLACG00000017433	si:dkey-98f17.5	94	58.548	Latimeria_chalumnae
ENSIPUG00000016678	si:ch211-11k18.4	99	58.986	ENSLOCG00000003824	si:dkey-98f17.5	96	58.986	Lepisosteus_oculatus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.046	ENSMAMG00000014528	si:dkey-98f17.5	96	59.815	Mastacembelus_armatus
ENSIPUG00000016678	si:ch211-11k18.4	99	82.195	ENSMAMG00000002536	si:ch211-11k18.4	99	82.195	Mastacembelus_armatus
ENSIPUG00000016678	si:ch211-11k18.4	100	77.546	ENSMZEG00005008941	si:ch211-11k18.4	96	78.472	Maylandia_zebra
ENSIPUG00000016678	si:ch211-11k18.4	99	60.508	ENSMZEG00005016572	si:dkey-98f17.5	96	60.508	Maylandia_zebra
ENSIPUG00000016678	si:ch211-11k18.4	99	77.700	ENSMMOG00000012485	si:ch211-11k18.4	96	77.700	Mola_mola
ENSIPUG00000016678	si:ch211-11k18.4	99	77.829	ENSMALG00000019735	si:ch211-11k18.4	96	78.241	Monopterus_albus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.698	ENSMALG00000012761	si:dkey-98f17.5	98	60.698	Monopterus_albus
ENSIPUG00000016678	si:ch211-11k18.4	100	79.032	ENSNBRG00000002220	si:ch211-11k18.4	99	78.802	Neolamprologus_brichardi
ENSIPUG00000016678	si:ch211-11k18.4	99	59.861	ENSNBRG00000006068	si:dkey-98f17.5	96	59.861	Neolamprologus_brichardi
ENSIPUG00000016678	si:ch211-11k18.4	99	79.167	ENSONIG00000019412	si:ch211-11k18.4	96	79.167	Oreochromis_niloticus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.739	ENSONIG00000013568	si:dkey-98f17.5	96	60.970	Oreochromis_niloticus
ENSIPUG00000016678	si:ch211-11k18.4	91	59.950	ENSORLG00000007958	si:dkey-98f17.5	92	59.950	Oryzias_latipes
ENSIPUG00000016678	si:ch211-11k18.4	99	76.389	ENSORLG00000012015	si:ch211-11k18.4	96	76.389	Oryzias_latipes
ENSIPUG00000016678	si:ch211-11k18.4	99	76.157	ENSORLG00020012386	si:ch211-11k18.4	96	76.157	Oryzias_latipes_hni
ENSIPUG00000016678	si:ch211-11k18.4	99	58.430	ENSORLG00020013350	si:dkey-98f17.5	96	58.430	Oryzias_latipes_hni
ENSIPUG00000016678	si:ch211-11k18.4	99	76.852	ENSORLG00015022862	si:ch211-11k18.4	96	76.852	Oryzias_latipes_hsok
ENSIPUG00000016678	si:ch211-11k18.4	99	58.891	ENSORLG00015002000	si:dkey-98f17.5	96	58.891	Oryzias_latipes_hsok
ENSIPUG00000016678	si:ch211-11k18.4	99	58.756	ENSOMEG00000003154	si:dkey-98f17.5	99	58.756	Oryzias_melastigma
ENSIPUG00000016678	si:ch211-11k18.4	99	79.087	ENSOMEG00000018686	si:ch211-11k18.4	96	79.087	Oryzias_melastigma
ENSIPUG00000016678	si:ch211-11k18.4	99	72.685	ENSPKIG00000023918	-	95	72.917	Paramormyrops_kingsleyae
ENSIPUG00000016678	si:ch211-11k18.4	99	60.046	ENSPKIG00000024621	si:dkey-98f17.5	96	60.046	Paramormyrops_kingsleyae
ENSIPUG00000016678	si:ch211-11k18.4	99	79.612	ENSPKIG00000018807	si:ch211-11k18.4	96	79.612	Paramormyrops_kingsleyae
ENSIPUG00000016678	si:ch211-11k18.4	99	77.546	ENSPMGG00000016507	si:ch211-11k18.4	96	77.546	Periophthalmus_magnuspinnatus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.277	ENSPMGG00000019065	si:dkey-98f17.5	96	60.277	Periophthalmus_magnuspinnatus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.404	ENSPFOG00000015142	si:dkey-98f17.5	96	59.174	Poecilia_formosa
ENSIPUG00000016678	si:ch211-11k18.4	99	77.546	ENSPFOG00000007976	si:ch211-11k18.4	96	77.546	Poecilia_formosa
ENSIPUG00000016678	si:ch211-11k18.4	99	77.546	ENSPLAG00000019794	si:ch211-11k18.4	96	77.546	Poecilia_latipinna
ENSIPUG00000016678	si:ch211-11k18.4	99	59.353	ENSPLAG00000003709	si:dkey-98f17.5	96	59.353	Poecilia_latipinna
ENSIPUG00000016678	si:ch211-11k18.4	99	59.584	ENSPMEG00000018709	si:dkey-98f17.5	91	59.584	Poecilia_mexicana
ENSIPUG00000016678	si:ch211-11k18.4	99	77.829	ENSPMEG00000024198	si:ch211-11k18.4	99	77.829	Poecilia_mexicana
ENSIPUG00000016678	si:ch211-11k18.4	99	60.284	ENSPREG00000000708	si:dkey-98f17.5	98	60.284	Poecilia_reticulata
ENSIPUG00000016678	si:ch211-11k18.4	95	79.534	ENSPREG00000015319	si:ch211-11k18.4	87	79.534	Poecilia_reticulata
ENSIPUG00000016678	si:ch211-11k18.4	99	78.935	ENSPNYG00000017099	si:ch211-11k18.4	96	78.935	Pundamilia_nyererei
ENSIPUG00000016678	si:ch211-11k18.4	99	60.508	ENSPNYG00000017266	si:dkey-98f17.5	96	60.508	Pundamilia_nyererei
ENSIPUG00000016678	si:ch211-11k18.4	99	80.787	ENSPNAG00000022138	si:ch211-11k18.4	96	80.787	Pygocentrus_nattereri
ENSIPUG00000016678	si:ch211-11k18.4	99	59.447	ENSPNAG00000021352	si:dkey-98f17.5	96	59.540	Pygocentrus_nattereri
ENSIPUG00000016678	si:ch211-11k18.4	99	58.065	ENSSFOG00015017965	si:dkey-98f17.5	96	58.065	Scleropages_formosus
ENSIPUG00000016678	si:ch211-11k18.4	99	75.926	ENSSFOG00015000985	si:ch211-11k18.4	91	75.926	Scleropages_formosus
ENSIPUG00000016678	si:ch211-11k18.4	99	76.157	ENSSMAG00000009651	si:ch211-11k18.4	96	75.926	Scophthalmus_maximus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.815	ENSSMAG00000011905	si:dkey-98f17.5	98	59.677	Scophthalmus_maximus
ENSIPUG00000016678	si:ch211-11k18.4	99	79.167	ENSSDUG00000016411	si:ch211-11k18.4	96	78.704	Seriola_dumerili
ENSIPUG00000016678	si:ch211-11k18.4	98	59.112	ENSSDUG00000013457	si:dkey-98f17.5	95	59.112	Seriola_dumerili
ENSIPUG00000016678	si:ch211-11k18.4	98	59.346	ENSSLDG00000025395	si:dkey-98f17.5	95	59.346	Seriola_lalandi_dorsalis
ENSIPUG00000016678	si:ch211-11k18.4	99	78.935	ENSSLDG00000019145	si:ch211-11k18.4	96	78.472	Seriola_lalandi_dorsalis
ENSIPUG00000016678	si:ch211-11k18.4	86	64.721	ENSSPUG00000010096	-	95	63.926	Sphenodon_punctatus
ENSIPUG00000016678	si:ch211-11k18.4	99	60.508	ENSSPAG00000018800	si:dkey-98f17.5	96	60.508	Stegastes_partitus
ENSIPUG00000016678	si:ch211-11k18.4	99	79.167	ENSSPAG00000010697	si:ch211-11k18.4	96	79.167	Stegastes_partitus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.908	ENSTRUG00000021287	si:dkey-98f17.5	96	60.369	Takifugu_rubripes
ENSIPUG00000016678	si:ch211-11k18.4	99	77.315	ENSTRUG00000020291	si:ch211-11k18.4	96	77.315	Takifugu_rubripes
ENSIPUG00000016678	si:ch211-11k18.4	99	64.138	ENSXETG00000031783	-	96	64.138	Xenopus_tropicalis
ENSIPUG00000016678	si:ch211-11k18.4	99	60.648	ENSXCOG00000017002	si:dkey-98f17.5	96	60.789	Xiphophorus_couchianus
ENSIPUG00000016678	si:ch211-11k18.4	99	78.302	ENSXCOG00000018094	si:ch211-11k18.4	96	78.066	Xiphophorus_couchianus
ENSIPUG00000016678	si:ch211-11k18.4	99	78.302	ENSXMAG00000021235	si:ch211-11k18.4	96	78.066	Xiphophorus_maculatus
ENSIPUG00000016678	si:ch211-11k18.4	99	59.584	ENSXMAG00000007688	si:dkey-98f17.5	91	59.584	Xiphophorus_maculatus