EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016856 (Gene tree)
Gene ID: -
Gene Symbol: SRSF6
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 7492 bases
Position: chr15:25047166-25054657
Accession: 108276344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000024940	RRM_1	PF00076.22	1.2e-28	1	2
ENSIPUP00000024940	RRM_1	PF00076.22	1.2e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000025974	SRSF6-201	1017	XM_017487946	ENSIPUP00000024940	338 (aa)	XP_017343435	-

Gene Model

Click here to download ENSIPUG00000016856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016856	SRSF6	55	41.026	ENSIPUG00000017039	srsf1a	77	42.051

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016856	SRSF6	61	77.934	ENSACIG00000020091	-	88	77.778	Amphilophus_citrinellus
ENSIPUG00000016856	SRSF6	93	63.385	ENSACIG00000023658	-	56	83.978	Amphilophus_citrinellus
ENSIPUG00000016856	SRSF6	81	82.474	ENSAMXG00000003101	-	98	74.737	Astyanax_mexicanus
ENSIPUG00000016856	SRSF6	58	68.293	ENSCPOG00000011761	SRSF6	53	78.409	Cavia_porcellus
ENSIPUG00000016856	SRSF6	50	83.815	ENSELUG00000013506	SRSF6	94	70.126	Esox_lucius
ENSIPUG00000016856	SRSF6	58	75.362	ENSELUG00000024182	SRSF6	82	77.876	Esox_lucius
ENSIPUG00000016856	SRSF6	92	66.562	ENSFHEG00000023065	srsf6a	52	84.571	Fundulus_heteroclitus
ENSIPUG00000016856	SRSF6	50	81.034	ENSGMOG00000014458	srsf6a	54	70.283	Gadus_morhua
ENSIPUG00000016856	SRSF6	90	63.333	ENSGACG00000006084	srsf6a	51	81.461	Gasterosteus_aculeatus
ENSIPUG00000016856	SRSF6	99	68.142	ENSHBUG00000006386	-	55	86.047	Haplochromis_burtoni
ENSIPUG00000016856	SRSF6	60	64.039	ENSHGLG00000007701	-	54	70.000	Heterocephalus_glaber_female
ENSIPUG00000016856	SRSF6	88	62.333	ENSHCOG00000002740	srsf6a	55	84.795	Hippocampus_comes
ENSIPUG00000016856	SRSF6	88	63.880	ENSKMAG00000011934	srsf6a	56	85.294	Kryptolebias_marmoratus
ENSIPUG00000016856	SRSF6	88	66.771	ENSLBEG00000007356	srsf6a	50	80.447	Labrus_bergylta
ENSIPUG00000016856	SRSF6	99	64.470	ENSLACG00000005466	SRSF6	62	71.963	Latimeria_chalumnae
ENSIPUG00000016856	SRSF6	80	66.543	ENSMZEG00005020658	-	58	83.432	Maylandia_zebra
ENSIPUG00000016856	SRSF6	61	74.667	ENSMZEG00005008032	-	54	86.047	Maylandia_zebra
ENSIPUG00000016856	SRSF6	51	64.574	ENSMPUG00000017692	SRSF6	61	82.955	Mustela_putorius_furo
ENSIPUG00000016856	SRSF6	51	81.006	ENSNGAG00000017560	Srsf6	53	84.091	Nannospalax_galili
ENSIPUG00000016856	SRSF6	50	86.628	ENSNBRG00000014709	-	55	86.047	Neolamprologus_brichardi
ENSIPUG00000016856	SRSF6	91	61.392	ENSONIG00000001925	-	50	83.708	Oreochromis_niloticus
ENSIPUG00000016856	SRSF6	71	76.000	ENSONIG00000020247	-	51	84.971	Oreochromis_niloticus
ENSIPUG00000016856	SRSF6	50	52.353	ENSOCUG00000023999	-	69	52.047	Oryctolagus_cuniculus
ENSIPUG00000016856	SRSF6	63	62.617	ENSPPAG00000043131	-	54	70.115	Pan_paniscus
ENSIPUG00000016856	SRSF6	63	62.617	ENSPTRG00000046274	-	54	70.115	Pan_troglodytes
ENSIPUG00000016856	SRSF6	92	46.688	ENSPKIG00000015703	-	91	62.044	Paramormyrops_kingsleyae
ENSIPUG00000016856	SRSF6	92	72.845	ENSPKIG00000018463	-	59	93.333	Paramormyrops_kingsleyae
ENSIPUG00000016856	SRSF6	93	66.767	ENSPLAG00000009243	srsf6a	73	79.310	Poecilia_latipinna
ENSIPUG00000016856	SRSF6	58	73.632	ENSPCAG00000010954	SRSF6	53	83.523	Procavia_capensis
ENSIPUG00000016856	SRSF6	99	59.587	ENSPNYG00000004944	-	55	86.047	Pundamilia_nyererei
ENSIPUG00000016856	SRSF6	91	70.181	ENSSFOG00015019681	-	51	80.749	Scleropages_formosus
ENSIPUG00000016856	SRSF6	95	66.667	ENSSMAG00000017447	-	53	81.034	Scophthalmus_maximus
ENSIPUG00000016856	SRSF6	85	68.519	ENSSPAG00000002362	srsf6a	64	82.320	Stegastes_partitus
ENSIPUG00000016856	SRSF6	51	66.977	ENSSSCG00000007362	SRSF6	58	82.955	Sus_scrofa
ENSIPUG00000016856	SRSF6	99	61.877	ENSTNIG00000001692	srsf6a	54	82.022	Tetraodon_nigroviridis