EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016905 (Gene tree)
Gene ID: 108260009
Gene Symbol: Smarca1
Alias: si:dkey-148b12.1
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 22386 bases
Position: chr28:729513-751898
Accession: 108260009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000024985	ResIII	PF04851.15	3.3e-10	1	1
ENSIPUP00000025043	ResIII	PF04851.15	3.5e-10	1	1
ENSIPUP00000025121	ResIII	PF04851.15	5e-10	1	1
ENSIPUP00000024985	DEAD	PF00270.29	8.9e-06	1	1
ENSIPUP00000025121	DEAD	PF00270.29	9.4e-06	1	1
ENSIPUP00000025043	DEAD	PF00270.29	9.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026082	-	4851	XM_017459911	ENSIPUP00000025043	1016 (aa)	XP_017315400	W5UKX0
ENSIPUT00000026021	-	4187	XM_017459913	ENSIPUP00000024985	983 (aa)	XP_017315402	-
ENSIPUT00000026162	-	2937	-	ENSIPUP00000025121	978 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000016905's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016905's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016905	Smarca1	51	45.726	ENSIPUG00000022617	chd1l	53	42.730
ENSIPUG00000016905	Smarca1	56	44.649	ENSIPUG00000002634	HELLS	72	39.833
ENSIPUG00000016905	Smarca1	99	84.292	ENSIPUG00000005229	SMARCA5	99	82.224

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016905	Smarca1	99	86.925	ENSG00000102038	SMARCA1	95	85.149	Homo_sapiens
ENSIPUG00000016905	Smarca1	99	84.189	ENSAPOG00000016035	smarca5	98	84.775	Acanthochromis_polyacanthus
ENSIPUG00000016905	Smarca1	99	85.772	ENSAMEG00000015218	SMARCA1	95	83.953	Ailuropoda_melanoleuca
ENSIPUG00000016905	Smarca1	92	84.795	ENSACIG00000016982	smarca5	99	84.899	Amphilophus_citrinellus
ENSIPUG00000016905	Smarca1	99	84.189	ENSAOCG00000015578	smarca5	96	82.224	Amphiprion_ocellaris
ENSIPUG00000016905	Smarca1	99	84.189	ENSAPEG00000011117	smarca5	99	85.106	Amphiprion_percula
ENSIPUG00000016905	Smarca1	99	84.324	ENSATEG00000012894	smarca5	94	84.567	Anabas_testudineus
ENSIPUG00000016905	Smarca1	99	90.266	ENSAPLG00000013149	SMARCA1	99	90.266	Anas_platyrhynchos
ENSIPUG00000016905	Smarca1	99	90.296	ENSACAG00000011376	SMARCA1	97	88.496	Anolis_carolinensis
ENSIPUG00000016905	Smarca1	99	81.920	ENSANAG00000023098	SMARCA1	95	80.297	Aotus_nancymaae
ENSIPUG00000016905	Smarca1	99	84.216	ENSACLG00000025356	smarca5	96	82.522	Astatotilapia_calliptera
ENSIPUG00000016905	Smarca1	99	84.292	ENSAMXG00000005709	smarca5	94	84.292	Astyanax_mexicanus
ENSIPUG00000016905	Smarca1	95	94.957	ENSAMXG00000011227	smarca1	100	94.957	Astyanax_mexicanus
ENSIPUG00000016905	Smarca1	99	86.823	ENSBTAG00000002292	SMARCA1	95	85.030	Bos_taurus
ENSIPUG00000016905	Smarca1	98	64.433	WBGene00002169	isw-1	93	64.899	Caenorhabditis_elegans
ENSIPUG00000016905	Smarca1	99	86.925	ENSCJAG00000002868	SMARCA1	95	85.149	Callithrix_jacchus
ENSIPUG00000016905	Smarca1	99	77.510	ENSCAFG00000018673	SMARCA1	99	78.867	Canis_familiaris
ENSIPUG00000016905	Smarca1	99	86.925	ENSCAFG00020001751	SMARCA1	95	85.149	Canis_lupus_dingo
ENSIPUG00000016905	Smarca1	99	86.925	ENSCHIG00000009837	SMARCA1	95	85.248	Capra_hircus
ENSIPUG00000016905	Smarca1	99	87.130	ENSTSYG00000004240	SMARCA1	97	86.988	Carlito_syrichta
ENSIPUG00000016905	Smarca1	99	85.584	ENSCPOG00000013601	SMARCA1	96	84.331	Cavia_porcellus
ENSIPUG00000016905	Smarca1	99	83.963	ENSCCAG00000030817	SMARCA1	95	82.277	Cebus_capucinus
ENSIPUG00000016905	Smarca1	98	87.812	ENSCATG00000015921	SMARCA1	95	86.061	Cercocebus_atys
ENSIPUG00000016905	Smarca1	99	85.904	ENSCLAG00000002171	SMARCA1	95	84.257	Chinchilla_lanigera
ENSIPUG00000016905	Smarca1	99	86.925	ENSCSAG00000008460	SMARCA1	95	85.149	Chlorocebus_sabaeus
ENSIPUG00000016905	Smarca1	99	89.990	ENSCPBG00000001146	SMARCA1	94	89.178	Chrysemys_picta_bellii
ENSIPUG00000016905	Smarca1	99	74.642	ENSCING00000004110	swi/snf	98	74.115	Ciona_intestinalis
ENSIPUG00000016905	Smarca1	99	74.616	ENSCSAVG00000004620	-	99	75.812	Ciona_savignyi
ENSIPUG00000016905	Smarca1	99	87.028	ENSCANG00000007183	SMARCA1	95	85.248	Colobus_angolensis_palliatus
ENSIPUG00000016905	Smarca1	99	86.210	ENSCGRG00001010776	Smarca1	95	84.356	Cricetulus_griseus_chok1gshd
ENSIPUG00000016905	Smarca1	98	86.425	ENSCGRG00000015301	Smarca1	98	85.351	Cricetulus_griseus_crigri
ENSIPUG00000016905	Smarca1	99	83.881	ENSCSEG00000000328	smarca5	96	82.125	Cynoglossus_semilaevis
ENSIPUG00000016905	Smarca1	99	83.809	ENSCVAG00000008668	smarca5	99	84.652	Cyprinodon_variegatus
ENSIPUG00000016905	Smarca1	100	91.036	ENSDARG00000012776	smarca1	100	90.173	Danio_rerio
ENSIPUG00000016905	Smarca1	99	83.470	ENSDARG00000052348	smarca5	97	80.788	Danio_rerio
ENSIPUG00000016905	Smarca1	98	87.188	ENSDNOG00000004315	SMARCA1	95	85.455	Dasypus_novemcinctus
ENSIPUG00000016905	Smarca1	98	86.875	ENSDORG00000009270	Smarca1	95	85.238	Dipodomys_ordii
ENSIPUG00000016905	Smarca1	97	75.104	FBgn0011604	Iswi	97	73.752	Drosophila_melanogaster
ENSIPUG00000016905	Smarca1	83	86.607	ENSETEG00000017426	SMARCA1	85	86.607	Echinops_telfairi
ENSIPUG00000016905	Smarca1	99	82.702	ENSEBUG00000001239	smarca5	98	82.010	Eptatretus_burgeri
ENSIPUG00000016905	Smarca1	99	81.827	ENSEASG00005008218	SMARCA1	99	82.335	Equus_asinus_asinus
ENSIPUG00000016905	Smarca1	99	86.823	ENSECAG00000012106	SMARCA1	95	85.050	Equus_caballus
ENSIPUG00000016905	Smarca1	81	87.748	ENSEEUG00000014927	SMARCA1	82	87.748	Erinaceus_europaeus
ENSIPUG00000016905	Smarca1	99	92.988	ENSELUG00000010515	smarca1	100	92.144	Esox_lucius
ENSIPUG00000016905	Smarca1	99	86.721	ENSFCAG00000018496	SMARCA1	95	85.035	Felis_catus
ENSIPUG00000016905	Smarca1	94	90.393	ENSFALG00000000209	SMARCA1	98	90.929	Ficedula_albicollis
ENSIPUG00000016905	Smarca1	98	86.111	ENSFDAG00000009818	SMARCA1	96	85.584	Fukomys_damarensis
ENSIPUG00000016905	Smarca1	99	83.809	ENSFHEG00000007687	smarca5	94	83.469	Fundulus_heteroclitus
ENSIPUG00000016905	Smarca1	96	91.226	ENSGALG00000008431	SMARCA1	97	89.796	Gallus_gallus
ENSIPUG00000016905	Smarca1	99	84.216	ENSGAFG00000017731	smarca5	96	82.522	Gambusia_affinis
ENSIPUG00000016905	Smarca1	98	90.279	ENSGAGG00000023575	SMARCA1	99	90.279	Gopherus_agassizii
ENSIPUG00000016905	Smarca1	74	81.962	ENSGGOG00000012841	-	94	81.545	Gorilla_gorilla
ENSIPUG00000016905	Smarca1	99	85.495	ENSHGLG00000003080	SMARCA1	95	83.861	Heterocephalus_glaber_female
ENSIPUG00000016905	Smarca1	99	84.975	ENSHGLG00100001102	SMARCA1	99	84.369	Heterocephalus_glaber_male
ENSIPUG00000016905	Smarca1	99	84.016	ENSHCOG00000005458	smarca5	97	81.773	Hippocampus_comes
ENSIPUG00000016905	Smarca1	99	86.831	ENSSTOG00000014524	SMARCA1	95	86.239	Ictidomys_tridecemlineatus
ENSIPUG00000016905	Smarca1	99	85.627	ENSJJAG00000002593	Smarca1	94	85.540	Jaculus_jaculus
ENSIPUG00000016905	Smarca1	99	84.631	ENSKMAG00000003777	smarca5	94	84.521	Kryptolebias_marmoratus
ENSIPUG00000016905	Smarca1	94	84.239	ENSLBEG00000013295	SMARCA1	100	85.624	Labrus_bergylta
ENSIPUG00000016905	Smarca1	99	83.096	ENSLBEG00000018112	smarca5	95	83.096	Labrus_bergylta
ENSIPUG00000016905	Smarca1	99	90.224	ENSLACG00000016697	SMARCA1	99	88.791	Latimeria_chalumnae
ENSIPUG00000016905	Smarca1	99	92.792	ENSLOCG00000014591	smarca1	100	89.731	Lepisosteus_oculatus
ENSIPUG00000016905	Smarca1	99	86.193	ENSLAFG00000000896	SMARCA1	99	86.327	Loxodonta_africana
ENSIPUG00000016905	Smarca1	99	86.925	ENSMFAG00000002117	SMARCA1	98	86.032	Macaca_fascicularis
ENSIPUG00000016905	Smarca1	98	87.812	ENSMMUG00000008818	SMARCA1	99	87.539	Macaca_mulatta
ENSIPUG00000016905	Smarca1	98	87.812	ENSMNEG00000041768	SMARCA1	98	86.032	Macaca_nemestrina
ENSIPUG00000016905	Smarca1	99	86.823	ENSMLEG00000043198	SMARCA1	95	85.050	Mandrillus_leucophaeus
ENSIPUG00000016905	Smarca1	99	84.426	ENSMAMG00000014294	smarca5	96	82.522	Mastacembelus_armatus
ENSIPUG00000016905	Smarca1	99	84.216	ENSMZEG00005009369	smarca5	96	82.522	Maylandia_zebra
ENSIPUG00000016905	Smarca1	99	88.900	ENSMGAG00000007042	SMARCA1	99	88.218	Meleagris_gallopavo
ENSIPUG00000016905	Smarca1	98	86.632	ENSMAUG00000008133	Smarca1	95	84.669	Mesocricetus_auratus
ENSIPUG00000016905	Smarca1	99	86.925	ENSMICG00000015768	SMARCA1	95	85.332	Microcebus_murinus
ENSIPUG00000016905	Smarca1	99	85.671	ENSMOCG00000009464	Smarca1	95	84.080	Microtus_ochrogaster
ENSIPUG00000016905	Smarca1	99	81.976	ENSMMOG00000005547	smarca5	99	81.332	Mola_mola
ENSIPUG00000016905	Smarca1	99	89.409	ENSMODG00000013187	-	97	87.945	Monodelphis_domestica
ENSIPUG00000016905	Smarca1	99	83.914	ENSMALG00000002081	smarca5	99	81.727	Monopterus_albus
ENSIPUG00000016905	Smarca1	99	85.873	MGP_CAROLIEiJ_G0033034	Smarca1	96	84.180	Mus_caroli
ENSIPUG00000016905	Smarca1	99	85.873	ENSMUSG00000031099	Smarca1	96	84.412	Mus_musculus
ENSIPUG00000016905	Smarca1	99	85.758	MGP_PahariEiJ_G0031579	Smarca1	95	85.196	Mus_pahari
ENSIPUG00000016905	Smarca1	99	85.873	MGP_SPRETEiJ_G0034192	Smarca1	96	84.412	Mus_spretus
ENSIPUG00000016905	Smarca1	99	85.671	ENSMPUG00000017423	SMARCA1	90	83.953	Mustela_putorius_furo
ENSIPUG00000016905	Smarca1	99	84.693	ENSMLUG00000029614	SMARCA1	95	82.681	Myotis_lucifugus
ENSIPUG00000016905	Smarca1	98	87.047	ENSNGAG00000006492	Smarca1	95	85.628	Nannospalax_galili
ENSIPUG00000016905	Smarca1	99	84.216	ENSNBRG00000004463	smarca5	99	83.283	Neolamprologus_brichardi
ENSIPUG00000016905	Smarca1	98	86.708	ENSNLEG00000015179	SMARCA1	97	86.154	Nomascus_leucogenys
ENSIPUG00000016905	Smarca1	94	80.810	ENSMEUG00000008819	SMARCA1	99	80.588	Notamacropus_eugenii
ENSIPUG00000016905	Smarca1	98	86.008	ENSODEG00000012163	SMARCA1	95	84.111	Octodon_degus
ENSIPUG00000016905	Smarca1	99	84.216	ENSONIG00000009993	smarca5	96	82.522	Oreochromis_niloticus
ENSIPUG00000016905	Smarca1	98	90.176	ENSOANG00000002862	SMARCA1	99	90.176	Ornithorhynchus_anatinus
ENSIPUG00000016905	Smarca1	99	86.721	ENSOCUG00000001047	SMARCA1	95	84.950	Oryctolagus_cuniculus
ENSIPUG00000016905	Smarca1	99	84.426	ENSORLG00000021998	smarca5	94	84.426	Oryzias_latipes
ENSIPUG00000016905	Smarca1	99	84.324	ENSORLG00020017679	smarca5	97	81.729	Oryzias_latipes_hni
ENSIPUG00000016905	Smarca1	99	84.426	ENSORLG00015017210	smarca5	97	82.051	Oryzias_latipes_hsok
ENSIPUG00000016905	Smarca1	99	84.631	ENSOMEG00000000086	smarca5	97	82.249	Oryzias_melastigma
ENSIPUG00000016905	Smarca1	98	86.934	ENSOGAG00000004399	SMARCA1	95	85.329	Otolemur_garnettii
ENSIPUG00000016905	Smarca1	99	87.090	ENSOARG00000014638	SMARCA1	99	87.090	Ovis_aries
ENSIPUG00000016905	Smarca1	99	86.925	ENSPPAG00000034647	SMARCA1	95	85.149	Pan_paniscus
ENSIPUG00000016905	Smarca1	99	86.823	ENSPPRG00000008929	SMARCA1	95	85.134	Panthera_pardus
ENSIPUG00000016905	Smarca1	99	84.940	ENSPTIG00000000915	SMARCA1	97	84.341	Panthera_tigris_altaica
ENSIPUG00000016905	Smarca1	99	86.925	ENSPTRG00000049876	SMARCA1	95	86.061	Pan_troglodytes
ENSIPUG00000016905	Smarca1	99	86.925	ENSPANG00000003871	SMARCA1	95	85.149	Papio_anubis
ENSIPUG00000016905	Smarca1	98	91.079	ENSPKIG00000013411	smarca1	96	92.114	Paramormyrops_kingsleyae
ENSIPUG00000016905	Smarca1	98	90.279	ENSPSIG00000010101	SMARCA1	99	90.279	Pelodiscus_sinensis
ENSIPUG00000016905	Smarca1	98	87.047	ENSPEMG00000017503	Smarca1	95	85.427	Peromyscus_maniculatus_bairdii
ENSIPUG00000016905	Smarca1	99	89.990	ENSPCIG00000015460	SMARCA1	98	89.279	Phascolarctos_cinereus
ENSIPUG00000016905	Smarca1	99	84.426	ENSPFOG00000007649	smarca5	96	82.522	Poecilia_formosa
ENSIPUG00000016905	Smarca1	99	84.426	ENSPLAG00000003363	smarca5	96	82.522	Poecilia_latipinna
ENSIPUG00000016905	Smarca1	99	84.324	ENSPMEG00000019849	smarca5	96	82.423	Poecilia_mexicana
ENSIPUG00000016905	Smarca1	99	84.324	ENSPREG00000023250	smarca5	96	82.423	Poecilia_reticulata
ENSIPUG00000016905	Smarca1	99	84.168	ENSPPYG00000020703	SMARCA1	95	82.475	Pongo_abelii
ENSIPUG00000016905	Smarca1	82	83.871	ENSPCOG00000020722	SMARCA1	93	83.111	Propithecus_coquereli
ENSIPUG00000016905	Smarca1	91	86.615	ENSPVAG00000003805	SMARCA1	89	86.615	Pteropus_vampyrus
ENSIPUG00000016905	Smarca1	60	85.154	ENSPNYG00000012299	smarca5	89	85.014	Pundamilia_nyererei
ENSIPUG00000016905	Smarca1	99	86.108	ENSRNOG00000003762	Smarca1	95	84.440	Rattus_norvegicus
ENSIPUG00000016905	Smarca1	99	87.028	ENSRROG00000034167	SMARCA1	95	85.248	Rhinopithecus_roxellana
ENSIPUG00000016905	Smarca1	99	86.988	ENSSBOG00000020641	SMARCA1	99	86.988	Saimiri_boliviensis_boliviensis
ENSIPUG00000016905	Smarca1	98	83.574	ENSSHAG00000013518	SMARCA1	99	83.591	Sarcophilus_harrisii
ENSIPUG00000016905	Smarca1	99	84.221	ENSSFOG00015016794	smarca5	99	84.314	Scleropages_formosus
ENSIPUG00000016905	Smarca1	99	94.094	ENSSFOG00015009043	smarca1	100	92.654	Scleropages_formosus
ENSIPUG00000016905	Smarca1	99	83.811	ENSSMAG00000004801	smarca5	96	82.880	Scophthalmus_maximus
ENSIPUG00000016905	Smarca1	99	84.119	ENSSDUG00000020690	smarca5	97	81.962	Seriola_dumerili
ENSIPUG00000016905	Smarca1	99	84.119	ENSSLDG00000025190	smarca5	97	81.962	Seriola_lalandi_dorsalis
ENSIPUG00000016905	Smarca1	83	88.256	ENSSARG00000000842	SMARCA1	81	88.256	Sorex_araneus
ENSIPUG00000016905	Smarca1	96	90.381	ENSSPUG00000000590	SMARCA1	95	88.516	Sphenodon_punctatus
ENSIPUG00000016905	Smarca1	99	84.292	ENSSPAG00000002894	smarca5	97	84.473	Stegastes_partitus
ENSIPUG00000016905	Smarca1	98	87.708	ENSSSCG00000012649	SMARCA1	96	85.772	Sus_scrofa
ENSIPUG00000016905	Smarca1	99	90.061	ENSTGUG00000003899	-	99	90.061	Taeniopygia_guttata
ENSIPUG00000016905	Smarca1	99	83.503	ENSTRUG00000014094	smarca5	96	81.927	Takifugu_rubripes
ENSIPUG00000016905	Smarca1	99	82.752	ENSTNIG00000017717	smarca5	95	80.834	Tetraodon_nigroviridis
ENSIPUG00000016905	Smarca1	91	85.936	ENSTBEG00000014973	SMARCA1	99	80.203	Tupaia_belangeri
ENSIPUG00000016905	Smarca1	97	84.004	ENSTTRG00000006168	SMARCA1	98	83.901	Tursiops_truncatus
ENSIPUG00000016905	Smarca1	99	86.823	ENSUAMG00000020201	SMARCA1	95	84.851	Ursus_americanus
ENSIPUG00000016905	Smarca1	99	82.698	ENSUMAG00000004073	SMARCA1	98	86.364	Ursus_maritimus
ENSIPUG00000016905	Smarca1	77	90.164	ENSVPAG00000010492	-	79	90.164	Vicugna_pacos
ENSIPUG00000016905	Smarca1	99	86.925	ENSVVUG00000008878	SMARCA1	99	87.983	Vulpes_vulpes
ENSIPUG00000016905	Smarca1	99	88.889	ENSXETG00000001526	smarca1	99	88.342	Xenopus_tropicalis
ENSIPUG00000016905	Smarca1	99	84.114	ENSXCOG00000011170	smarca5	99	82.423	Xiphophorus_couchianus
ENSIPUG00000016905	Smarca1	99	84.114	ENSXMAG00000009678	smarca5	98	85.153	Xiphophorus_maculatus