EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000016994 (Gene tree)
Gene ID: 108279903
Gene Symbol: cnot4b
Alias: zgc:63566
Full Name: CCR4-NOT transcription complex subunit 4-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 36690 bases
Position: chr19:15642903-15679592
Accession: 108279903
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025240	RRM_1	PF00076.22	2.5e-05	1	1
ENSIPUP00000025158	RRM_1	PF00076.22	3.4e-05	1	1
ENSIPUP00000025132	RRM_1	PF00076.22	3.4e-05	1	1
ENSIPUP00000025190	RRM_1	PF00076.22	4.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026285	-	1989	-	ENSIPUP00000025240	662 (aa)	-	-
ENSIPUT00000026174	-	5340	-	ENSIPUP00000025132	830 (aa)	-	-
ENSIPUT00000026256	-	4987	-	ENSIPUP00000025212	816 (aa)	-	-
ENSIPUT00000026199	-	2703	XM_017494521	ENSIPUP00000025158	807 (aa)	XP_017350010	A0A2D0T5V7
ENSIPUT00000026232	-	5470	XM_017494516	ENSIPUP00000025190	977 (aa)	XP_017350005	A0A2D0T5V2

Gene Model

Click here to download ENSIPUG00000016994's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000016994	cnot4b	92	93.358	ENSIPUG00000006393	cnot4	100	71.814

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016994	cnot4b	100	70.982	ENSG00000080802	CNOT4	97	81.647	Homo_sapiens
ENSIPUG00000016994	cnot4b	93	92.222	ENSAPOG00000016272	cnot4a	83	92.222	Acanthochromis_polyacanthus
ENSIPUG00000016994	cnot4b	92	91.628	ENSAMEG00000012081	CNOT4	91	91.628	Ailuropoda_melanoleuca
ENSIPUG00000016994	cnot4b	100	92.222	ENSACIG00000003011	cnot4a	85	92.222	Amphilophus_citrinellus
ENSIPUG00000016994	cnot4b	100	92.222	ENSAOCG00000010792	cnot4a	87	92.222	Amphiprion_ocellaris
ENSIPUG00000016994	cnot4b	100	92.222	ENSAPEG00000004680	cnot4a	87	92.222	Amphiprion_percula
ENSIPUG00000016994	cnot4b	100	91.852	ENSATEG00000017580	cnot4a	87	91.852	Anabas_testudineus
ENSIPUG00000016994	cnot4b	100	69.202	ENSAPLG00000016441	CNOT4	100	68.293	Anas_platyrhynchos
ENSIPUG00000016994	cnot4b	100	68.712	ENSACAG00000011154	CNOT4	100	67.805	Anolis_carolinensis
ENSIPUG00000016994	cnot4b	100	70.772	ENSANAG00000032156	CNOT4	94	88.356	Aotus_nancymaae
ENSIPUG00000016994	cnot4b	100	92.222	ENSACLG00000002514	cnot4a	100	92.251	Astatotilapia_calliptera
ENSIPUG00000016994	cnot4b	100	90.175	ENSAMXG00000001373	cnot4a	100	94.096	Astyanax_mexicanus
ENSIPUG00000016994	cnot4b	100	96.000	ENSAMXG00000011473	cnot4b	100	97.048	Astyanax_mexicanus
ENSIPUG00000016994	cnot4b	100	70.501	ENSBTAG00000017919	CNOT4	100	71.091	Bos_taurus
ENSIPUG00000016994	cnot4b	100	70.772	ENSCJAG00000012532	CNOT4	91	88.356	Callithrix_jacchus
ENSIPUG00000016994	cnot4b	100	70.458	ENSCAFG00000003223	CNOT4	100	70.901	Canis_familiaris
ENSIPUG00000016994	cnot4b	100	70.920	ENSCAFG00020000093	CNOT4	100	71.365	Canis_lupus_dingo
ENSIPUG00000016994	cnot4b	100	70.963	ENSCHIG00000010955	CNOT4	100	71.407	Capra_hircus
ENSIPUG00000016994	cnot4b	100	70.901	ENSTSYG00000000893	CNOT4	99	80.092	Carlito_syrichta
ENSIPUG00000016994	cnot4b	100	69.276	ENSCAPG00000006213	CNOT4	100	92.251	Cavia_aperea
ENSIPUG00000016994	cnot4b	100	70.753	ENSCPOG00000011526	CNOT4	100	71.196	Cavia_porcellus
ENSIPUG00000016994	cnot4b	100	70.310	ENSCCAG00000024414	CNOT4	94	96.507	Cebus_capucinus
ENSIPUG00000016994	cnot4b	100	70.519	ENSCATG00000022607	CNOT4	91	88.356	Cercocebus_atys
ENSIPUG00000016994	cnot4b	100	71.365	ENSCLAG00000001857	CNOT4	100	71.810	Chinchilla_lanigera
ENSIPUG00000016994	cnot4b	100	64.583	ENSCSAG00000009096	CNOT4	100	64.555	Chlorocebus_sabaeus
ENSIPUG00000016994	cnot4b	65	96.257	ENSCHOG00000010412	CNOT4	65	96.257	Choloepus_hoffmanni
ENSIPUG00000016994	cnot4b	100	69.193	ENSCPBG00000004959	CNOT4	100	68.287	Chrysemys_picta_bellii
ENSIPUG00000016994	cnot4b	100	70.519	ENSCANG00000029319	CNOT4	91	88.356	Colobus_angolensis_palliatus
ENSIPUG00000016994	cnot4b	100	70.458	ENSCGRG00001014651	Cnot4	100	71.049	Cricetulus_griseus_chok1gshd
ENSIPUG00000016994	cnot4b	100	70.458	ENSCGRG00000005727	Cnot4	100	71.049	Cricetulus_griseus_crigri
ENSIPUG00000016994	cnot4b	94	92.222	ENSCSEG00000015080	cnot4a	94	92.251	Cynoglossus_semilaevis
ENSIPUG00000016994	cnot4b	100	91.111	ENSCVAG00000009399	cnot4a	100	90.511	Cyprinodon_variegatus
ENSIPUG00000016994	cnot4b	100	94.265	ENSDARG00000007639	cnot4b	90	94.265	Danio_rerio
ENSIPUG00000016994	cnot4b	100	91.039	ENSDARG00000007045	cnot4a	100	71.359	Danio_rerio
ENSIPUG00000016994	cnot4b	100	65.037	ENSDNOG00000009409	CNOT4	100	65.239	Dasypus_novemcinctus
ENSIPUG00000016994	cnot4b	100	72.296	ENSDORG00000012268	Cnot4	100	71.704	Dipodomys_ordii
ENSIPUG00000016994	cnot4b	100	61.870	ENSETEG00000013407	CNOT4	94	60.710	Echinops_telfairi
ENSIPUG00000016994	cnot4b	100	70.103	ENSEASG00005014430	CNOT4	100	70.545	Equus_asinus_asinus
ENSIPUG00000016994	cnot4b	100	70.103	ENSECAG00000020262	CNOT4	100	70.545	Equus_caballus
ENSIPUG00000016994	cnot4b	90	87.189	ENSELUG00000011540	cnot4b	97	87.189	Esox_lucius
ENSIPUG00000016994	cnot4b	99	91.971	ENSELUG00000008742	cnot4a	99	93.609	Esox_lucius
ENSIPUG00000016994	cnot4b	100	70.920	ENSFCAG00000011904	CNOT4	96	81.710	Felis_catus
ENSIPUG00000016994	cnot4b	100	69.109	ENSFALG00000011194	CNOT4	100	68.408	Ficedula_albicollis
ENSIPUG00000016994	cnot4b	100	70.753	ENSFDAG00000013525	CNOT4	100	71.196	Fukomys_damarensis
ENSIPUG00000016994	cnot4b	100	91.481	ENSFHEG00000006608	cnot4a	99	91.481	Fundulus_heteroclitus
ENSIPUG00000016994	cnot4b	96	67.946	ENSGMOG00000001329	cnot4a	100	68.441	Gadus_morhua
ENSIPUG00000016994	cnot4b	100	68.987	ENSGALG00000011682	CNOT4	100	68.083	Gallus_gallus
ENSIPUG00000016994	cnot4b	100	91.852	ENSGACG00000004276	cnot4a	100	91.882	Gasterosteus_aculeatus
ENSIPUG00000016994	cnot4b	100	69.193	ENSGAGG00000017331	CNOT4	100	68.773	Gopherus_agassizii
ENSIPUG00000016994	cnot4b	92	68.608	ENSGGOG00000000142	CNOT4	97	79.564	Gorilla_gorilla
ENSIPUG00000016994	cnot4b	100	92.222	ENSHBUG00000000027	cnot4a	100	92.251	Haplochromis_burtoni
ENSIPUG00000016994	cnot4b	100	70.901	ENSHGLG00000011533	CNOT4	100	71.344	Heterocephalus_glaber_female
ENSIPUG00000016994	cnot4b	84	72.600	ENSHGLG00100013058	CNOT4	94	71.902	Heterocephalus_glaber_male
ENSIPUG00000016994	cnot4b	99	91.111	ENSHCOG00000015815	cnot4a	100	91.144	Hippocampus_comes
ENSIPUG00000016994	cnot4b	100	70.920	ENSSTOG00000007717	CNOT4	100	71.365	Ictidomys_tridecemlineatus
ENSIPUG00000016994	cnot4b	84	64.235	ENSJJAG00000019991	-	94	64.057	Jaculus_jaculus
ENSIPUG00000016994	cnot4b	100	70.615	ENSJJAG00000016618	Cnot4	100	71.662	Jaculus_jaculus
ENSIPUG00000016994	cnot4b	94	92.222	ENSKMAG00000004581	cnot4a	100	91.606	Kryptolebias_marmoratus
ENSIPUG00000016994	cnot4b	100	91.481	ENSLBEG00000009999	cnot4a	87	91.481	Labrus_bergylta
ENSIPUG00000016994	cnot4b	100	70.624	ENSLACG00000002647	CNOT4	99	69.830	Latimeria_chalumnae
ENSIPUG00000016994	cnot4b	100	92.473	ENSLOCG00000016126	cnot4a	92	92.473	Lepisosteus_oculatus
ENSIPUG00000016994	cnot4b	100	64.921	ENSLAFG00000000709	CNOT4	100	64.891	Loxodonta_africana
ENSIPUG00000016994	cnot4b	100	70.519	ENSMFAG00000046349	CNOT4	91	88.356	Macaca_fascicularis
ENSIPUG00000016994	cnot4b	100	70.519	ENSMMUG00000016181	CNOT4	91	88.356	Macaca_mulatta
ENSIPUG00000016994	cnot4b	100	70.982	ENSMNEG00000042164	CNOT4	91	88.356	Macaca_nemestrina
ENSIPUG00000016994	cnot4b	100	70.519	ENSMLEG00000032709	CNOT4	91	88.356	Mandrillus_leucophaeus
ENSIPUG00000016994	cnot4b	100	92.222	ENSMAMG00000023194	cnot4a	100	92.222	Mastacembelus_armatus
ENSIPUG00000016994	cnot4b	100	92.222	ENSMZEG00005007312	cnot4a	100	86.347	Maylandia_zebra
ENSIPUG00000016994	cnot4b	100	68.712	ENSMGAG00000011788	CNOT4	100	67.805	Meleagris_gallopavo
ENSIPUG00000016994	cnot4b	100	70.606	ENSMAUG00000020415	Cnot4	100	71.049	Mesocricetus_auratus
ENSIPUG00000016994	cnot4b	100	70.606	ENSMICG00000001667	CNOT4	100	81.439	Microcebus_murinus
ENSIPUG00000016994	cnot4b	100	70.606	ENSMOCG00000020955	Cnot4	100	71.196	Microtus_ochrogaster
ENSIPUG00000016994	cnot4b	78	91.513	ENSMMOG00000014565	cnot4a	96	91.513	Mola_mola
ENSIPUG00000016994	cnot4b	100	65.564	ENSMODG00000014068	CNOT4	100	64.677	Monodelphis_domestica
ENSIPUG00000016994	cnot4b	93	91.852	ENSMALG00000011662	cnot4a	80	91.852	Monopterus_albus
ENSIPUG00000016994	cnot4b	100	70.982	MGP_CAROLIEiJ_G0028217	Cnot4	100	71.577	Mus_caroli
ENSIPUG00000016994	cnot4b	100	70.920	ENSMUSG00000038784	Cnot4	100	71.513	Mus_musculus
ENSIPUG00000016994	cnot4b	100	70.772	MGP_PahariEiJ_G0021974	Cnot4	100	71.365	Mus_pahari
ENSIPUG00000016994	cnot4b	100	70.920	MGP_SPRETEiJ_G0029216	Cnot4	100	71.513	Mus_spretus
ENSIPUG00000016994	cnot4b	100	64.548	ENSMPUG00000004089	CNOT4	100	64.520	Mustela_putorius_furo
ENSIPUG00000016994	cnot4b	100	71.344	ENSMLUG00000008260	CNOT4	100	70.753	Myotis_lucifugus
ENSIPUG00000016994	cnot4b	100	71.407	ENSNGAG00000015030	Cnot4	100	71.259	Nannospalax_galili
ENSIPUG00000016994	cnot4b	85	85.978	ENSNBRG00000021144	cnot4a	100	85.978	Neolamprologus_brichardi
ENSIPUG00000016994	cnot4b	100	70.370	ENSNLEG00000013352	CNOT4	97	81.412	Nomascus_leucogenys
ENSIPUG00000016994	cnot4b	84	68.831	ENSOPRG00000001023	CNOT4	81	68.831	Ochotona_princeps
ENSIPUG00000016994	cnot4b	100	70.901	ENSODEG00000012975	CNOT4	100	71.344	Octodon_degus
ENSIPUG00000016994	cnot4b	100	92.222	ENSONIG00000008656	cnot4a	87	92.222	Oreochromis_niloticus
ENSIPUG00000016994	cnot4b	100	65.725	ENSOANG00000005006	CNOT4	100	64.835	Ornithorhynchus_anatinus
ENSIPUG00000016994	cnot4b	100	64.670	ENSOCUG00000013448	CNOT4	100	64.642	Oryctolagus_cuniculus
ENSIPUG00000016994	cnot4b	100	91.111	ENSORLG00000003727	cnot4a	95	91.111	Oryzias_latipes
ENSIPUG00000016994	cnot4b	100	91.481	ENSORLG00020015684	cnot4a	95	91.481	Oryzias_latipes_hni
ENSIPUG00000016994	cnot4b	100	91.481	ENSORLG00015008470	cnot4a	95	91.481	Oryzias_latipes_hsok
ENSIPUG00000016994	cnot4b	100	91.481	ENSOMEG00000011084	cnot4a	88	91.481	Oryzias_melastigma
ENSIPUG00000016994	cnot4b	100	64.713	ENSOGAG00000015499	CNOT4	100	64.520	Otolemur_garnettii
ENSIPUG00000016994	cnot4b	100	64.469	ENSOARG00000008803	CNOT4	100	64.277	Ovis_aries
ENSIPUG00000016994	cnot4b	100	70.667	ENSPPAG00000041937	CNOT4	91	88.356	Pan_paniscus
ENSIPUG00000016994	cnot4b	100	70.458	ENSPPRG00000023940	CNOT4	100	70.901	Panthera_pardus
ENSIPUG00000016994	cnot4b	100	70.772	ENSPTIG00000016601	CNOT4	96	81.710	Panthera_tigris_altaica
ENSIPUG00000016994	cnot4b	100	70.519	ENSPTRG00000019727	CNOT4	91	88.356	Pan_troglodytes
ENSIPUG00000016994	cnot4b	100	70.519	ENSPANG00000017724	CNOT4	91	88.356	Papio_anubis
ENSIPUG00000016994	cnot4b	100	69.115	ENSPKIG00000018137	cnot4a	92	88.530	Paramormyrops_kingsleyae
ENSIPUG00000016994	cnot4b	100	69.485	ENSPSIG00000011256	CNOT4	100	68.995	Pelodiscus_sinensis
ENSIPUG00000016994	cnot4b	85	91.144	ENSPMGG00000005671	cnot4a	100	91.144	Periophthalmus_magnuspinnatus
ENSIPUG00000016994	cnot4b	100	70.606	ENSPEMG00000021566	Cnot4	100	71.196	Peromyscus_maniculatus_bairdii
ENSIPUG00000016994	cnot4b	100	72.470	ENSPCIG00000029622	CNOT4	99	62.558	Phascolarctos_cinereus
ENSIPUG00000016994	cnot4b	100	91.481	ENSPFOG00000002228	cnot4a	88	91.481	Poecilia_formosa
ENSIPUG00000016994	cnot4b	100	91.481	ENSPLAG00000001780	cnot4a	100	90.876	Poecilia_latipinna
ENSIPUG00000016994	cnot4b	100	91.481	ENSPMEG00000006852	cnot4a	100	90.876	Poecilia_mexicana
ENSIPUG00000016994	cnot4b	100	91.481	ENSPREG00000008171	cnot4a	99	90.000	Poecilia_reticulata
ENSIPUG00000016994	cnot4b	100	64.583	ENSPPYG00000018026	CNOT4	100	64.555	Pongo_abelii
ENSIPUG00000016994	cnot4b	100	70.310	ENSPCOG00000019907	CNOT4	100	81.439	Propithecus_coquereli
ENSIPUG00000016994	cnot4b	94	64.858	ENSPVAG00000004905	CNOT4	90	63.250	Pteropus_vampyrus
ENSIPUG00000016994	cnot4b	100	92.222	ENSPNYG00000004276	cnot4a	100	86.347	Pundamilia_nyererei
ENSIPUG00000016994	cnot4b	100	84.756	ENSPNAG00000008679	cnot4b	100	97.417	Pygocentrus_nattereri
ENSIPUG00000016994	cnot4b	100	89.474	ENSPNAG00000020433	cnot4a	100	93.358	Pygocentrus_nattereri
ENSIPUG00000016994	cnot4b	100	64.118	ENSRNOG00000010795	Cnot4	100	64.399	Rattus_norvegicus
ENSIPUG00000016994	cnot4b	100	70.519	ENSRBIG00000043977	CNOT4	91	88.356	Rhinopithecus_bieti
ENSIPUG00000016994	cnot4b	100	70.920	ENSSBOG00000020808	CNOT4	91	88.356	Saimiri_boliviensis_boliviensis
ENSIPUG00000016994	cnot4b	100	65.686	ENSSHAG00000013639	CNOT4	100	64.799	Sarcophilus_harrisii
ENSIPUG00000016994	cnot4b	100	89.964	ENSSFOG00015002019	cnot4a	100	89.606	Scleropages_formosus
ENSIPUG00000016994	cnot4b	100	94.265	ENSSFOG00015017285	CNOT4	92	94.265	Scleropages_formosus
ENSIPUG00000016994	cnot4b	100	92.222	ENSSMAG00000008614	cnot4a	100	92.222	Scophthalmus_maximus
ENSIPUG00000016994	cnot4b	84	87.805	ENSSDUG00000018585	cnot4b	100	87.805	Seriola_dumerili
ENSIPUG00000016994	cnot4b	100	92.222	ENSSDUG00000022635	cnot4a	87	92.222	Seriola_dumerili
ENSIPUG00000016994	cnot4b	100	62.950	ENSSLDG00000014347	cnot4b	100	63.062	Seriola_lalandi_dorsalis
ENSIPUG00000016994	cnot4b	100	92.222	ENSSLDG00000015770	cnot4a	100	92.222	Seriola_lalandi_dorsalis
ENSIPUG00000016994	cnot4b	100	71.684	ENSSPUG00000004677	CNOT4	100	71.088	Sphenodon_punctatus
ENSIPUG00000016994	cnot4b	100	92.222	ENSSPAG00000012329	cnot4a	100	92.251	Stegastes_partitus
ENSIPUG00000016994	cnot4b	100	70.753	ENSSSCG00000021354	CNOT4	100	71.196	Sus_scrofa
ENSIPUG00000016994	cnot4b	100	69.231	ENSTGUG00000009161	CNOT4	100	68.325	Taeniopygia_guttata
ENSIPUG00000016994	cnot4b	100	84.768	ENSTRUG00000016861	cnot4a	100	79.758	Takifugu_rubripes
ENSIPUG00000016994	cnot4b	92	85.926	ENSTNIG00000016000	cnot4a	100	61.394	Tetraodon_nigroviridis
ENSIPUG00000016994	cnot4b	94	61.628	ENSTBEG00000002202	CNOT4	88	60.888	Tupaia_belangeri
ENSIPUG00000016994	cnot4b	94	65.891	ENSTTRG00000005122	CNOT4	90	64.654	Tursiops_truncatus
ENSIPUG00000016994	cnot4b	100	70.458	ENSUAMG00000026759	CNOT4	100	70.901	Ursus_americanus
ENSIPUG00000016994	cnot4b	99	70.387	ENSUMAG00000015351	CNOT4	94	71.728	Ursus_maritimus
ENSIPUG00000016994	cnot4b	100	70.920	ENSVVUG00000006200	CNOT4	100	71.365	Vulpes_vulpes
ENSIPUG00000016994	cnot4b	99	92.593	ENSXETG00000010594	cnot4	88	92.593	Xenopus_tropicalis
ENSIPUG00000016994	cnot4b	79	91.606	ENSXCOG00000020824	cnot4a	99	91.606	Xiphophorus_couchianus
ENSIPUG00000016994	cnot4b	100	91.852	ENSXMAG00000016984	cnot4a	100	91.241	Xiphophorus_maculatus