EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000016997 (Gene tree)
Gene ID: 108267336
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 25507 bases
Position: chr7:509883-535389
Accession: 108267336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025286	EST1	PF10374.9	1.3e-25	1	1
ENSIPUP00000025259	EST1	PF10374.9	1.4e-25	1	1
ENSIPUP00000025326	EST1	PF10374.9	2.6e-24	1	1
ENSIPUP00000025326	EST1_DNA_bind	PF10373.9	1.4e-50	1	1
ENSIPUP00000025286	EST1_DNA_bind	PF10373.9	1.5e-50	1	1
ENSIPUP00000025259	EST1_DNA_bind	PF10373.9	1.6e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026334	-	7121	XM_017471364	ENSIPUP00000025286	1119 (aa)	XP_017326853	A0A2D0R8D7
ENSIPUT00000026305	-	7271	XM_017471363	ENSIPUP00000025259	1169 (aa)	XP_017326852	A0A2D0R8E3
ENSIPUT00000026377	-	3315	-	ENSIPUP00000025326	1104 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000016997's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000016997's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000016997	smg7	99	68.499	ENSG00000116698	SMG7	86	93.711	Homo_sapiens
ENSIPUG00000016997	smg7	89	84.695	ENSAPOG00000009611	smg7	95	85.435	Acanthochromis_polyacanthus
ENSIPUG00000016997	smg7	99	68.531	ENSAMEG00000002357	SMG7	100	67.586	Ailuropoda_melanoleuca
ENSIPUG00000016997	smg7	97	74.296	ENSACIG00000015152	smg7	100	74.387	Amphilophus_citrinellus
ENSIPUG00000016997	smg7	100	77.019	ENSAOCG00000013538	smg7	100	77.685	Amphiprion_ocellaris
ENSIPUG00000016997	smg7	100	76.622	ENSAPEG00000007851	smg7	100	77.288	Amphiprion_percula
ENSIPUG00000016997	smg7	100	76.170	ENSATEG00000006931	smg7	100	76.849	Anabas_testudineus
ENSIPUG00000016997	smg7	99	68.210	ENSAPLG00000015811	SMG7	99	68.559	Anas_platyrhynchos
ENSIPUG00000016997	smg7	99	66.805	ENSACAG00000014989	SMG7	99	67.415	Anolis_carolinensis
ENSIPUG00000016997	smg7	99	68.645	ENSANAG00000028114	SMG7	84	94.194	Aotus_nancymaae
ENSIPUG00000016997	smg7	100	76.801	ENSACLG00000022079	smg7	100	76.214	Astatotilapia_calliptera
ENSIPUG00000016997	smg7	100	88.126	ENSAMXG00000020809	smg7	100	88.126	Astyanax_mexicanus
ENSIPUG00000016997	smg7	99	68.325	ENSBTAG00000008003	SMG7	99	68.325	Bos_taurus
ENSIPUG00000016997	smg7	99	67.976	ENSCJAG00000005135	SMG7	85	94.194	Callithrix_jacchus
ENSIPUG00000016997	smg7	99	67.340	ENSCAFG00000013276	SMG7	97	66.919	Canis_familiaris
ENSIPUG00000016997	smg7	99	67.860	ENSCAFG00020015475	SMG7	85	92.994	Canis_lupus_dingo
ENSIPUG00000016997	smg7	100	67.280	ENSCHIG00000018192	SMG7	99	67.197	Capra_hircus
ENSIPUG00000016997	smg7	99	68.614	ENSTSYG00000002667	SMG7	80	94.194	Carlito_syrichta
ENSIPUG00000016997	smg7	99	67.929	ENSCPOG00000008906	SMG7	99	66.751	Cavia_porcellus
ENSIPUG00000016997	smg7	99	68.499	ENSCCAG00000028596	SMG7	84	94.194	Cebus_capucinus
ENSIPUG00000016997	smg7	99	68.586	ENSCATG00000011063	SMG7	84	94.194	Cercocebus_atys
ENSIPUG00000016997	smg7	99	68.233	ENSCLAG00000010751	SMG7	99	67.972	Chinchilla_lanigera
ENSIPUG00000016997	smg7	99	67.929	ENSCSAG00000012654	SMG7	97	67.929	Chlorocebus_sabaeus
ENSIPUG00000016997	smg7	93	59.836	ENSCHOG00000010522	SMG7	93	59.745	Choloepus_hoffmanni
ENSIPUG00000016997	smg7	99	69.199	ENSCPBG00000015724	SMG7	99	69.032	Chrysemys_picta_bellii
ENSIPUG00000016997	smg7	99	68.564	ENSCANG00000015680	SMG7	84	94.194	Colobus_angolensis_palliatus
ENSIPUG00000016997	smg7	99	66.667	ENSCGRG00001013705	Smg7	99	66.609	Cricetulus_griseus_chok1gshd
ENSIPUG00000016997	smg7	99	66.608	ENSCGRG00000018401	Smg7	100	66.550	Cricetulus_griseus_crigri
ENSIPUG00000016997	smg7	93	80.402	ENSCVAG00000011842	smg7	100	80.402	Cyprinodon_variegatus
ENSIPUG00000016997	smg7	100	84.700	ENSDARG00000060767	smg7	100	84.869	Danio_rerio
ENSIPUG00000016997	smg7	99	67.422	ENSDORG00000007331	Smg7	99	67.422	Dipodomys_ordii
ENSIPUG00000016997	smg7	96	66.551	ENSETEG00000002654	SMG7	99	66.551	Echinops_telfairi
ENSIPUG00000016997	smg7	99	67.842	ENSEASG00005006524	SMG7	99	67.926	Equus_asinus_asinus
ENSIPUG00000016997	smg7	99	67.926	ENSECAG00000004313	SMG7	97	80.977	Equus_caballus
ENSIPUG00000016997	smg7	96	65.974	ENSEEUG00000002024	SMG7	94	65.887	Erinaceus_europaeus
ENSIPUG00000016997	smg7	100	79.035	ENSELUG00000010293	smg7	100	79.250	Esox_lucius
ENSIPUG00000016997	smg7	99	67.590	ENSFCAG00000010900	SMG7	99	69.802	Felis_catus
ENSIPUG00000016997	smg7	99	66.610	ENSFALG00000003047	SMG7	100	65.620	Ficedula_albicollis
ENSIPUG00000016997	smg7	99	67.338	ENSFDAG00000012121	SMG7	99	67.254	Fukomys_damarensis
ENSIPUG00000016997	smg7	100	72.799	ENSFHEG00000011073	smg7	100	73.060	Fundulus_heteroclitus
ENSIPUG00000016997	smg7	83	80.639	ENSGMOG00000004916	smg7	91	80.639	Gadus_morhua
ENSIPUG00000016997	smg7	99	68.609	ENSGALG00000004667	SMG7	99	69.043	Gallus_gallus
ENSIPUG00000016997	smg7	100	74.366	ENSGAFG00000019000	smg7	100	74.366	Gambusia_affinis
ENSIPUG00000016997	smg7	98	71.928	ENSGACG00000001634	smg7	99	72.946	Gasterosteus_aculeatus
ENSIPUG00000016997	smg7	99	68.412	ENSGGOG00000002342	SMG7	82	91.875	Gorilla_gorilla
ENSIPUG00000016997	smg7	100	76.717	ENSHBUG00000003726	smg7	100	76.131	Haplochromis_burtoni
ENSIPUG00000016997	smg7	99	68.636	ENSHGLG00000009353	SMG7	100	67.460	Heterocephalus_glaber_female
ENSIPUG00000016997	smg7	99	61.461	ENSHGLG00100004878	-	99	61.293	Heterocephalus_glaber_male
ENSIPUG00000016997	smg7	99	68.549	ENSHGLG00100009637	-	99	68.202	Heterocephalus_glaber_male
ENSIPUG00000016997	smg7	99	67.674	ENSSTOG00000000401	SMG7	99	67.674	Ictidomys_tridecemlineatus
ENSIPUG00000016997	smg7	99	66.975	ENSJJAG00000012351	Smg7	99	66.807	Jaculus_jaculus
ENSIPUG00000016997	smg7	91	78.431	ENSKMAG00000004900	smg7	99	78.431	Kryptolebias_marmoratus
ENSIPUG00000016997	smg7	54	71.812	ENSLBEG00000005220	-	75	72.194	Labrus_bergylta
ENSIPUG00000016997	smg7	99	75.654	ENSLBEG00000002983	smg7	99	75.874	Labrus_bergylta
ENSIPUG00000016997	smg7	99	70.091	ENSLACG00000000972	SMG7	99	70.315	Latimeria_chalumnae
ENSIPUG00000016997	smg7	99	72.342	ENSLOCG00000002010	smg7	99	72.250	Lepisosteus_oculatus
ENSIPUG00000016997	smg7	99	67.565	ENSLAFG00000008186	SMG7	99	67.228	Loxodonta_africana
ENSIPUG00000016997	smg7	99	67.926	ENSMFAG00000031653	SMG7	84	94.194	Macaca_fascicularis
ENSIPUG00000016997	smg7	99	67.896	ENSMMUG00000018458	SMG7	99	67.839	Macaca_mulatta
ENSIPUG00000016997	smg7	99	68.586	ENSMNEG00000034798	SMG7	84	94.194	Macaca_nemestrina
ENSIPUG00000016997	smg7	99	68.586	ENSMLEG00000037170	SMG7	100	68.017	Mandrillus_leucophaeus
ENSIPUG00000016997	smg7	88	75.000	ENSMAMG00000018733	smg7	86	74.812	Mastacembelus_armatus
ENSIPUG00000016997	smg7	100	76.717	ENSMZEG00005015247	smg7	100	76.214	Maylandia_zebra
ENSIPUG00000016997	smg7	97	68.004	ENSMGAG00000001561	SMG7	99	68.739	Meleagris_gallopavo
ENSIPUG00000016997	smg7	99	67.130	ENSMAUG00000019484	Smg7	99	66.919	Mesocricetus_auratus
ENSIPUG00000016997	smg7	99	68.586	ENSMICG00000007145	SMG7	81	94.194	Microcebus_murinus
ENSIPUG00000016997	smg7	99	67.014	ENSMOCG00000020748	Smg7	99	66.638	Microtus_ochrogaster
ENSIPUG00000016997	smg7	99	72.456	ENSMMOG00000001524	smg7	99	72.456	Mola_mola
ENSIPUG00000016997	smg7	92	68.416	ENSMODG00000007139	SMG7	99	68.135	Monodelphis_domestica
ENSIPUG00000016997	smg7	100	76.171	ENSMALG00000000061	smg7	93	81.910	Monopterus_albus
ENSIPUG00000016997	smg7	99	67.655	MGP_CAROLIEiJ_G0014704	Smg7	99	67.452	Mus_caroli
ENSIPUG00000016997	smg7	99	67.509	ENSMUSG00000042772	Smg7	99	67.247	Mus_musculus
ENSIPUG00000016997	smg7	99	67.801	MGP_PahariEiJ_G0027940	Smg7	99	67.539	Mus_pahari
ENSIPUG00000016997	smg7	99	67.596	MGP_SPRETEiJ_G0015511	Smg7	99	67.334	Mus_spretus
ENSIPUG00000016997	smg7	98	67.290	ENSMPUG00000011732	SMG7	97	66.865	Mustela_putorius_furo
ENSIPUG00000016997	smg7	99	67.031	ENSMLUG00000015417	SMG7	99	66.863	Myotis_lucifugus
ENSIPUG00000016997	smg7	100	67.993	ENSNGAG00000009836	Smg7	100	67.708	Nannospalax_galili
ENSIPUG00000016997	smg7	98	70.133	ENSNBRG00000024343	smg7	99	69.875	Neolamprologus_brichardi
ENSIPUG00000016997	smg7	99	68.674	ENSNLEG00000018018	SMG7	100	68.103	Nomascus_leucogenys
ENSIPUG00000016997	smg7	71	65.992	ENSMEUG00000004681	SMG7	73	65.992	Notamacropus_eugenii
ENSIPUG00000016997	smg7	96	61.558	ENSOPRG00000013942	SMG7	96	62.105	Ochotona_princeps
ENSIPUG00000016997	smg7	99	68.375	ENSODEG00000010390	SMG7	99	68.115	Octodon_degus
ENSIPUG00000016997	smg7	100	76.460	ENSONIG00000000277	smg7	100	75.937	Oreochromis_niloticus
ENSIPUG00000016997	smg7	99	67.373	ENSOANG00000000994	SMG7	100	67.542	Ornithorhynchus_anatinus
ENSIPUG00000016997	smg7	99	64.310	ENSOCUG00000005887	SMG7	92	64.226	Oryctolagus_cuniculus
ENSIPUG00000016997	smg7	100	73.906	ENSORLG00000007314	smg7	100	74.327	Oryzias_latipes
ENSIPUG00000016997	smg7	100	73.906	ENSORLG00020015779	smg7	100	74.348	Oryzias_latipes_hni
ENSIPUG00000016997	smg7	100	74.158	ENSORLG00015012289	smg7	100	74.096	Oryzias_latipes_hsok
ENSIPUG00000016997	smg7	100	74.136	ENSOMEG00000002328	smg7	100	74.558	Oryzias_melastigma
ENSIPUG00000016997	smg7	96	66.638	ENSOGAG00000003107	SMG7	93	66.464	Otolemur_garnettii
ENSIPUG00000016997	smg7	99	67.593	ENSOARG00000001352	SMG7	100	67.376	Ovis_aries
ENSIPUG00000016997	smg7	99	68.674	ENSPPAG00000031619	SMG7	84	94.194	Pan_paniscus
ENSIPUG00000016997	smg7	99	68.412	ENSPPRG00000011222	SMG7	99	68.352	Panthera_pardus
ENSIPUG00000016997	smg7	96	67.731	ENSPTIG00000007242	SMG7	100	67.672	Panthera_tigris_altaica
ENSIPUG00000016997	smg7	99	68.674	ENSPTRG00000001764	SMG7	84	94.194	Pan_troglodytes
ENSIPUG00000016997	smg7	99	68.586	ENSPANG00000004520	SMG7	99	68.614	Papio_anubis
ENSIPUG00000016997	smg7	100	73.586	ENSPKIG00000007242	smg7	100	73.924	Paramormyrops_kingsleyae
ENSIPUG00000016997	smg7	99	67.369	ENSPSIG00000012201	SMG7	100	68.226	Pelodiscus_sinensis
ENSIPUG00000016997	smg7	62	57.843	ENSPMGG00000021833	smg7	92	56.373	Periophthalmus_magnuspinnatus
ENSIPUG00000016997	smg7	99	66.579	ENSPEMG00000011315	Smg7	99	66.579	Peromyscus_maniculatus_bairdii
ENSIPUG00000016997	smg7	99	68.813	ENSPCIG00000003786	SMG7	89	93.125	Phascolarctos_cinereus
ENSIPUG00000016997	smg7	100	73.891	ENSPFOG00000019219	smg7	100	73.975	Poecilia_formosa
ENSIPUG00000016997	smg7	100	73.864	ENSPLAG00000001446	smg7	100	73.951	Poecilia_latipinna
ENSIPUG00000016997	smg7	97	73.351	ENSPMEG00000005218	smg7	99	73.442	Poecilia_mexicana
ENSIPUG00000016997	smg7	88	72.259	ENSPREG00000019039	smg7	92	72.259	Poecilia_reticulata
ENSIPUG00000016997	smg7	99	68.674	ENSPPYG00000000427	SMG7	99	68.412	Pongo_abelii
ENSIPUG00000016997	smg7	84	74.836	ENSPCAG00000008360	SMG7	86	74.836	Procavia_capensis
ENSIPUG00000016997	smg7	99	67.761	ENSPCOG00000011996	SMG7	76	94.194	Propithecus_coquereli
ENSIPUG00000016997	smg7	91	63.312	ENSPVAG00000000851	SMG7	89	63.038	Pteropus_vampyrus
ENSIPUG00000016997	smg7	100	76.762	ENSPNYG00000007643	smg7	100	76.174	Pundamilia_nyererei
ENSIPUG00000016997	smg7	100	89.105	ENSPNAG00000011374	smg7	100	89.443	Pygocentrus_nattereri
ENSIPUG00000016997	smg7	99	67.742	ENSRNOG00000027962	Smg7	99	69.173	Rattus_norvegicus
ENSIPUG00000016997	smg7	99	68.586	ENSRBIG00000036316	SMG7	100	68.017	Rhinopithecus_bieti
ENSIPUG00000016997	smg7	99	68.586	ENSRROG00000035719	SMG7	100	68.017	Rhinopithecus_roxellana
ENSIPUG00000016997	smg7	99	67.674	ENSSBOG00000023454	SMG7	86	93.711	Saimiri_boliviensis_boliviensis
ENSIPUG00000016997	smg7	100	68.000	ENSSHAG00000013147	SMG7	99	68.035	Sarcophilus_harrisii
ENSIPUG00000016997	smg7	100	77.553	ENSSFOG00015017252	smg7	99	84.211	Scleropages_formosus
ENSIPUG00000016997	smg7	100	75.337	ENSSMAG00000006067	smg7	100	75.524	Scophthalmus_maximus
ENSIPUG00000016997	smg7	96	84.986	ENSSDUG00000017543	smg7	100	76.557	Seriola_dumerili
ENSIPUG00000016997	smg7	99	68.039	ENSSPUG00000002064	SMG7	99	67.776	Sphenodon_punctatus
ENSIPUG00000016997	smg7	99	76.186	ENSSPAG00000008733	smg7	99	75.919	Stegastes_partitus
ENSIPUG00000016997	smg7	99	68.010	ENSSSCG00000015558	SMG7	99	67.842	Sus_scrofa
ENSIPUG00000016997	smg7	99	68.329	ENSTGUG00000003928	SMG7	100	68.794	Taeniopygia_guttata
ENSIPUG00000016997	smg7	97	73.604	ENSTNIG00000002802	smg7	100	68.096	Tetraodon_nigroviridis
ENSIPUG00000016997	smg7	79	68.000	ENSTBEG00000003220	SMG7	75	68.000	Tupaia_belangeri
ENSIPUG00000016997	smg7	96	66.696	ENSTTRG00000014778	SMG7	94	66.435	Tursiops_truncatus
ENSIPUG00000016997	smg7	97	65.909	ENSUAMG00000017473	SMG7	100	66.304	Ursus_americanus
ENSIPUG00000016997	smg7	97	65.909	ENSUMAG00000016389	SMG7	100	66.464	Ursus_maritimus
ENSIPUG00000016997	smg7	99	67.422	ENSVVUG00000008976	SMG7	99	70.297	Vulpes_vulpes
ENSIPUG00000016997	smg7	99	61.744	ENSXETG00000012528	smg7	99	61.711	Xenopus_tropicalis
ENSIPUG00000016997	smg7	100	73.864	ENSXMAG00000007123	smg7	100	74.038	Xiphophorus_maculatus