EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000017020 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 21885 bases
Position: chr17:5875773-5897657
Accession: 108278107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025410	ResIII	PF04851.15	7.6e-11	1	1
ENSIPUP00000025310	ResIII	PF04851.15	3.6e-09	1	1
ENSIPUP00000025410	DEAD	PF00270.29	5.4e-28	1	1
ENSIPUP00000025310	DEAD	PF00270.29	1.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026465	-	3324	-	ENSIPUP00000025410	1107 (aa)	-	-
ENSIPUT00000026360	-	2649	XM_017491276	ENSIPUP00000025310	883 (aa)	XP_017346765	-

Gene Model

Click here to download ENSIPUG00000017020's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017020's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000017020	hfm1	72	32.855	ENSIPUG00000013863	ascc3	61	32.504

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017020	hfm1	92	65.714	ENSG00000162669	HFM1	66	64.632	Homo_sapiens
ENSIPUG00000017020	hfm1	98	74.397	ENSAPOG00000005304	hfm1	99	74.397	Acanthochromis_polyacanthus
ENSIPUG00000017020	hfm1	92	66.110	ENSAMEG00000000432	HFM1	70	62.109	Ailuropoda_melanoleuca
ENSIPUG00000017020	hfm1	89	72.537	ENSACIG00000021553	hfm1	83	71.058	Amphilophus_citrinellus
ENSIPUG00000017020	hfm1	98	75.115	ENSAOCG00000022839	hfm1	99	75.115	Amphiprion_ocellaris
ENSIPUG00000017020	hfm1	98	74.684	ENSAPEG00000014316	hfm1	99	74.684	Amphiprion_percula
ENSIPUG00000017020	hfm1	92	73.333	ENSATEG00000019181	hfm1	85	67.835	Anabas_testudineus
ENSIPUG00000017020	hfm1	93	65.344	ENSAPLG00000013639	HFM1	65	64.974	Anas_platyrhynchos
ENSIPUG00000017020	hfm1	91	65.150	ENSANAG00000029513	HFM1	65	63.723	Aotus_nancymaae
ENSIPUG00000017020	hfm1	98	70.588	ENSACLG00000009033	hfm1	99	70.588	Astatotilapia_calliptera
ENSIPUG00000017020	hfm1	99	82.030	ENSAMXG00000006108	hfm1	66	81.283	Astyanax_mexicanus
ENSIPUG00000017020	hfm1	92	66.706	ENSBTAG00000020856	HFM1	65	65.702	Bos_taurus
ENSIPUG00000017020	hfm1	92	65.476	ENSCJAG00000001843	HFM1	66	64.557	Callithrix_jacchus
ENSIPUG00000017020	hfm1	92	65.871	ENSCAFG00000020187	HFM1	65	64.995	Canis_familiaris
ENSIPUG00000017020	hfm1	92	66.350	ENSTSYG00000014250	HFM1	73	60.509	Carlito_syrichta
ENSIPUG00000017020	hfm1	92	65.955	ENSCPOG00000007421	HFM1	74	61.708	Cavia_porcellus
ENSIPUG00000017020	hfm1	92	65.357	ENSCCAG00000033206	HFM1	66	64.030	Cebus_capucinus
ENSIPUG00000017020	hfm1	92	65.119	ENSCATG00000030987	HFM1	66	63.799	Cercocebus_atys
ENSIPUG00000017020	hfm1	92	66.748	ENSCLAG00000005173	HFM1	63	64.952	Chinchilla_lanigera
ENSIPUG00000017020	hfm1	76	52.727	ENSCSAVG00000005094	-	100	54.039	Ciona_savignyi
ENSIPUG00000017020	hfm1	88	63.636	ENSCGRG00001016995	Hfm1	69	59.388	Cricetulus_griseus_chok1gshd
ENSIPUG00000017020	hfm1	92	64.755	ENSCGRG00000017181	Hfm1	71	60.848	Cricetulus_griseus_crigri
ENSIPUG00000017020	hfm1	91	71.549	ENSCSEG00000017659	hfm1	88	68.854	Cynoglossus_semilaevis
ENSIPUG00000017020	hfm1	77	72.254	ENSCVAG00000005075	hfm1	86	74.965	Cyprinodon_variegatus
ENSIPUG00000017020	hfm1	99	80.048	ENSDARG00000104288	hfm1	82	80.048	Danio_rerio
ENSIPUG00000017020	hfm1	97	62.373	ENSDNOG00000004776	HFM1	62	64.492	Dasypus_novemcinctus
ENSIPUG00000017020	hfm1	92	63.837	ENSDORG00000014661	Hfm1	70	60.806	Dipodomys_ordii
ENSIPUG00000017020	hfm1	87	66.500	ENSEASG00005015424	HFM1	95	62.016	Equus_asinus_asinus
ENSIPUG00000017020	hfm1	92	66.548	ENSECAG00000024039	HFM1	63	66.238	Equus_caballus
ENSIPUG00000017020	hfm1	99	75.538	ENSELUG00000018944	hfm1	99	75.538	Esox_lucius
ENSIPUG00000017020	hfm1	92	65.714	ENSFCAG00000029116	HFM1	65	65.236	Felis_catus
ENSIPUG00000017020	hfm1	91	66.388	ENSFALG00000001781	HFM1	70	62.028	Ficedula_albicollis
ENSIPUG00000017020	hfm1	92	65.476	ENSFDAG00000020816	HFM1	64	64.594	Fukomys_damarensis
ENSIPUG00000017020	hfm1	91	70.553	ENSGMOG00000017436	hfm1	98	68.710	Gadus_morhua
ENSIPUG00000017020	hfm1	97	73.310	ENSGAFG00000018093	hfm1	99	73.310	Gambusia_affinis
ENSIPUG00000017020	hfm1	91	69.471	ENSGACG00000015686	hfm1	98	67.800	Gasterosteus_aculeatus
ENSIPUG00000017020	hfm1	92	65.714	ENSGGOG00000038524	HFM1	66	64.526	Gorilla_gorilla
ENSIPUG00000017020	hfm1	90	72.310	ENSHBUG00000007309	hfm1	88	70.032	Haplochromis_burtoni
ENSIPUG00000017020	hfm1	90	73.140	ENSHCOG00000019632	hfm1	98	73.140	Hippocampus_comes
ENSIPUG00000017020	hfm1	92	64.875	ENSJJAG00000017198	Hfm1	67	63.957	Jaculus_jaculus
ENSIPUG00000017020	hfm1	89	73.072	ENSKMAG00000002282	hfm1	91	70.121	Kryptolebias_marmoratus
ENSIPUG00000017020	hfm1	99	71.968	ENSLBEG00000006759	hfm1	99	71.968	Labrus_bergylta
ENSIPUG00000017020	hfm1	91	68.690	ENSLACG00000010698	HFM1	89	66.176	Latimeria_chalumnae
ENSIPUG00000017020	hfm1	92	74.350	ENSLOCG00000004931	hfm1	88	72.083	Lepisosteus_oculatus
ENSIPUG00000017020	hfm1	74	66.765	ENSLAFG00000015903	-	91	69.604	Loxodonta_africana
ENSIPUG00000017020	hfm1	92	63.082	ENSMFAG00000003649	HFM1	66	61.273	Macaca_fascicularis
ENSIPUG00000017020	hfm1	92	65.357	ENSMMUG00000006819	HFM1	66	63.979	Macaca_mulatta
ENSIPUG00000017020	hfm1	91	74.751	ENSMAMG00000004623	hfm1	92	80.769	Mastacembelus_armatus
ENSIPUG00000017020	hfm1	98	70.588	ENSMZEG00005004679	hfm1	99	70.588	Maylandia_zebra
ENSIPUG00000017020	hfm1	84	63.871	ENSMGAG00000008437	HFM1	96	67.358	Meleagris_gallopavo
ENSIPUG00000017020	hfm1	92	65.114	ENSMAUG00000018858	Hfm1	71	61.100	Mesocricetus_auratus
ENSIPUG00000017020	hfm1	92	65.636	ENSMICG00000037935	HFM1	70	61.994	Microcebus_murinus
ENSIPUG00000017020	hfm1	92	65.114	ENSMOCG00000014812	Hfm1	66	63.665	Microtus_ochrogaster
ENSIPUG00000017020	hfm1	99	74.312	ENSMMOG00000006148	hfm1	99	74.312	Mola_mola
ENSIPUG00000017020	hfm1	98	73.678	ENSMALG00000002401	hfm1	99	73.678	Monopterus_albus
ENSIPUG00000017020	hfm1	83	71.429	MGP_CAROLIEiJ_G0027496	Hfm1	61	70.000	Mus_caroli
ENSIPUG00000017020	hfm1	92	64.650	ENSMUSG00000043410	Hfm1	66	63.915	Mus_musculus
ENSIPUG00000017020	hfm1	92	64.887	MGP_PahariEiJ_G0017268	Hfm1	66	64.051	Mus_pahari
ENSIPUG00000017020	hfm1	92	65.243	MGP_SPRETEiJ_G0028495	Hfm1	66	64.233	Mus_spretus
ENSIPUG00000017020	hfm1	91	66.746	ENSMPUG00000004594	HFM1	64	64.590	Mustela_putorius_furo
ENSIPUG00000017020	hfm1	92	65.871	ENSMLUG00000010200	HFM1	70	62.008	Myotis_lucifugus
ENSIPUG00000017020	hfm1	91	74.032	ENSNBRG00000002910	hfm1	98	74.032	Neolamprologus_brichardi
ENSIPUG00000017020	hfm1	92	64.601	ENSNLEG00000010285	HFM1	63	63.776	Nomascus_leucogenys
ENSIPUG00000017020	hfm1	82	64.242	ENSMEUG00000015788	HFM1	65	60.135	Notamacropus_eugenii
ENSIPUG00000017020	hfm1	92	60.142	ENSOPRG00000013916	HFM1	60	60.844	Ochotona_princeps
ENSIPUG00000017020	hfm1	92	72.308	ENSONIG00000010590	hfm1	91	69.958	Oreochromis_niloticus
ENSIPUG00000017020	hfm1	89	74.140	ENSORLG00000026844	hfm1	100	74.140	Oryzias_latipes
ENSIPUG00000017020	hfm1	98	62.367	ENSORLG00020002951	hfm1	74	59.615	Oryzias_latipes_hni
ENSIPUG00000017020	hfm1	92	70.922	ENSOMEG00000016474	hfm1	65	69.403	Oryzias_melastigma
ENSIPUG00000017020	hfm1	92	65.636	ENSOGAG00000032369	HFM1	77	64.831	Otolemur_garnettii
ENSIPUG00000017020	hfm1	92	66.350	ENSOARG00000015812	HFM1	65	65.380	Ovis_aries
ENSIPUG00000017020	hfm1	92	65.952	ENSPPAG00000024582	HFM1	71	64.842	Pan_paniscus
ENSIPUG00000017020	hfm1	92	65.714	ENSPPRG00000003270	HFM1	65	65.129	Panthera_pardus
ENSIPUG00000017020	hfm1	92	65.714	ENSPTIG00000018881	HFM1	65	65.129	Panthera_tigris_altaica
ENSIPUG00000017020	hfm1	92	65.952	ENSPTRG00000000948	HFM1	66	64.842	Pan_troglodytes
ENSIPUG00000017020	hfm1	92	65.119	ENSPANG00000009838	HFM1	66	63.799	Papio_anubis
ENSIPUG00000017020	hfm1	95	72.811	ENSPKIG00000003810	hfm1	97	76.667	Paramormyrops_kingsleyae
ENSIPUG00000017020	hfm1	90	75.282	ENSPMGG00000011059	hfm1	99	75.282	Periophthalmus_magnuspinnatus
ENSIPUG00000017020	hfm1	92	64.958	ENSPEMG00000022852	Hfm1	70	60.964	Peromyscus_maniculatus_bairdii
ENSIPUG00000017020	hfm1	91	66.906	ENSPCIG00000014233	HFM1	63	64.750	Phascolarctos_cinereus
ENSIPUG00000017020	hfm1	90	72.585	ENSPFOG00000017194	hfm1	90	70.927	Poecilia_formosa
ENSIPUG00000017020	hfm1	92	72.024	ENSPLAG00000000571	hfm1	85	71.520	Poecilia_latipinna
ENSIPUG00000017020	hfm1	91	72.618	ENSPMEG00000019475	hfm1	86	71.704	Poecilia_mexicana
ENSIPUG00000017020	hfm1	97	73.248	ENSPREG00000007803	hfm1	99	73.248	Poecilia_reticulata
ENSIPUG00000017020	hfm1	92	65.714	ENSPPYG00000001163	HFM1	66	64.465	Pongo_abelii
ENSIPUG00000017020	hfm1	96	59.521	ENSPVAG00000009713	HFM1	66	59.722	Pteropus_vampyrus
ENSIPUG00000017020	hfm1	98	70.276	ENSPNYG00000001795	hfm1	99	70.276	Pundamilia_nyererei
ENSIPUG00000017020	hfm1	100	85.109	ENSPNAG00000010865	hfm1	92	85.109	Pygocentrus_nattereri
ENSIPUG00000017020	hfm1	92	65.952	ENSRNOG00000023299	Hfm1	66	64.550	Rattus_norvegicus
ENSIPUG00000017020	hfm1	99	65.357	ENSRROG00000045569	HFM1	66	63.971	Rhinopithecus_roxellana
ENSIPUG00000017020	hfm1	92	65.714	ENSSBOG00000027456	HFM1	67	64.557	Saimiri_boliviensis_boliviensis
ENSIPUG00000017020	hfm1	65	66.887	ENSSHAG00000014616	-	67	70.608	Sarcophilus_harrisii
ENSIPUG00000017020	hfm1	99	76.643	ENSSFOG00015020129	hfm1	63	74.738	Scleropages_formosus
ENSIPUG00000017020	hfm1	92	72.684	ENSSMAG00000006907	hfm1	87	73.051	Scophthalmus_maximus
ENSIPUG00000017020	hfm1	98	73.993	ENSSDUG00000011424	hfm1	99	73.993	Seriola_dumerili
ENSIPUG00000017020	hfm1	98	74.742	ENSSLDG00000016386	hfm1	99	74.742	Seriola_lalandi_dorsalis
ENSIPUG00000017020	hfm1	98	74.799	ENSSPAG00000001023	hfm1	99	74.799	Stegastes_partitus
ENSIPUG00000017020	hfm1	92	67.182	ENSSSCG00000006912	HFM1	68	66.346	Sus_scrofa
ENSIPUG00000017020	hfm1	92	64.657	ENSTGUG00000006172	HFM1	98	64.385	Taeniopygia_guttata
ENSIPUG00000017020	hfm1	52	75.484	ENSTNIG00000006962	hfm1	96	75.693	Tetraodon_nigroviridis
ENSIPUG00000017020	hfm1	92	65.874	ENSTTRG00000013933	HFM1	66	64.537	Tursiops_truncatus
ENSIPUG00000017020	hfm1	92	64.447	ENSVPAG00000011331	HFM1	70	60.454	Vicugna_pacos
ENSIPUG00000017020	hfm1	89	64.994	ENSVVUG00000020760	HFM1	97	60.080	Vulpes_vulpes
ENSIPUG00000017020	hfm1	97	73.953	ENSXMAG00000004178	hfm1	99	73.953	Xiphophorus_maculatus