EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000017039 (Gene tree)
Gene ID: 108278234
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1A
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 3884 bases
Position: chr17:21954045-21957928
Accession: 108278234
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025203	RRM_1	PF00076.22	1.7e-33	1	2
ENSIPUP00000025203	RRM_1	PF00076.22	1.7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026247	-	2316	XM_017491452	ENSIPUP00000025203	252 (aa)	XP_017346941	A0A2D0SW74

Gene Model

Click here to download ENSIPUG00000017039's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017039's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000017039	srsf1a	68	45.355	ENSIPUG00000003439	srsf5a	64	45.355
ENSIPUG00000017039	srsf1a	79	94.472	ENSIPUG00000008750	srsf1b	78	91.457
ENSIPUG00000017039	srsf1a	77	42.051	ENSIPUG00000016856	SRSF6	55	41.026
ENSIPUG00000017039	srsf1a	73	65.761	ENSIPUG00000005511	srsf9	72	66.848
ENSIPUG00000017039	srsf1a	67	47.701	ENSIPUG00000004776	-	58	44.706

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017039	srsf1a	98	93.145	ENSG00000136450	SRSF1	94	96.721	Homo_sapiens
ENSIPUG00000017039	srsf1a	79	92.462	ENSAPOG00000008542	-	80	92.462	Acanthochromis_polyacanthus
ENSIPUG00000017039	srsf1a	80	88.060	ENSAPOG00000002748	-	79	85.572	Acanthochromis_polyacanthus
ENSIPUG00000017039	srsf1a	79	87.437	ENSAMEG00000002635	SRSF1	94	89.540	Ailuropoda_melanoleuca
ENSIPUG00000017039	srsf1a	80	88.060	ENSACIG00000008091	srsf1a	83	86.070	Amphilophus_citrinellus
ENSIPUG00000017039	srsf1a	79	92.462	ENSAOCG00000000337	-	80	92.462	Amphiprion_ocellaris
ENSIPUG00000017039	srsf1a	80	88.557	ENSAOCG00000010671	-	84	86.567	Amphiprion_ocellaris
ENSIPUG00000017039	srsf1a	80	88.557	ENSAPEG00000009915	-	84	86.567	Amphiprion_percula
ENSIPUG00000017039	srsf1a	79	92.462	ENSAPEG00000023352	-	79	92.462	Amphiprion_percula
ENSIPUG00000017039	srsf1a	80	88.557	ENSATEG00000022403	-	78	86.567	Anabas_testudineus
ENSIPUG00000017039	srsf1a	82	85.437	ENSATEG00000021567	-	80	85.500	Anabas_testudineus
ENSIPUG00000017039	srsf1a	79	94.472	ENSACAG00000005542	-	94	92.050	Anolis_carolinensis
ENSIPUG00000017039	srsf1a	98	93.145	ENSANAG00000020583	-	95	94.203	Aotus_nancymaae
ENSIPUG00000017039	srsf1a	99	98.000	ENSAMXG00000035996	srsf1a	99	98.000	Astyanax_mexicanus
ENSIPUG00000017039	srsf1a	55	84.516	ENSAMXG00000024373	-	89	75.248	Astyanax_mexicanus
ENSIPUG00000017039	srsf1a	98	93.145	ENSBTAG00000014766	SRSF1	94	91.213	Bos_taurus
ENSIPUG00000017039	srsf1a	79	85.930	ENSCJAG00000008111	-	86	82.412	Callithrix_jacchus
ENSIPUG00000017039	srsf1a	98	93.145	ENSCJAG00000041713	-	95	94.203	Callithrix_jacchus
ENSIPUG00000017039	srsf1a	98	93.145	ENSCAFG00000017430	SRSF1	92	91.213	Canis_familiaris
ENSIPUG00000017039	srsf1a	98	93.145	ENSCAFG00020025632	-	92	91.213	Canis_lupus_dingo
ENSIPUG00000017039	srsf1a	79	93.467	ENSCHIG00000010787	SRSF1	94	91.213	Capra_hircus
ENSIPUG00000017039	srsf1a	98	93.145	ENSTSYG00000013899	-	95	94.203	Carlito_syrichta
ENSIPUG00000017039	srsf1a	98	93.145	ENSCPOG00000032681	-	94	91.213	Cavia_porcellus
ENSIPUG00000017039	srsf1a	98	93.145	ENSCCAG00000029484	-	95	94.203	Cebus_capucinus
ENSIPUG00000017039	srsf1a	98	93.145	ENSCATG00000042294	-	95	94.203	Cercocebus_atys
ENSIPUG00000017039	srsf1a	98	93.145	ENSCLAG00000014707	-	94	91.213	Chinchilla_lanigera
ENSIPUG00000017039	srsf1a	98	92.339	ENSCSAG00000005642	-	92	90.377	Chlorocebus_sabaeus
ENSIPUG00000017039	srsf1a	79	93.467	ENSCHOG00000001899	SRSF1	94	91.213	Choloepus_hoffmanni
ENSIPUG00000017039	srsf1a	98	94.355	ENSCPBG00000009851	-	94	92.469	Chrysemys_picta_bellii
ENSIPUG00000017039	srsf1a	98	93.145	ENSCANG00000029726	-	95	94.203	Colobus_angolensis_palliatus
ENSIPUG00000017039	srsf1a	98	93.145	ENSCGRG00001000670	Srsf1	92	91.213	Cricetulus_griseus_chok1gshd
ENSIPUG00000017039	srsf1a	98	93.145	ENSCGRG00000005590	Srsf1	94	91.213	Cricetulus_griseus_crigri
ENSIPUG00000017039	srsf1a	79	84.135	ENSCSEG00000009973	-	94	80.321	Cynoglossus_semilaevis
ENSIPUG00000017039	srsf1a	80	92.040	ENSCSEG00000014272	-	79	89.552	Cynoglossus_semilaevis
ENSIPUG00000017039	srsf1a	80	88.557	ENSCVAG00000018617	-	79	86.567	Cyprinodon_variegatus
ENSIPUG00000017039	srsf1a	79	88.384	ENSCVAG00000005458	-	90	87.634	Cyprinodon_variegatus
ENSIPUG00000017039	srsf1a	99	97.244	ENSDARG00000057691	srsf1a	99	97.244	Danio_rerio
ENSIPUG00000017039	srsf1a	79	94.975	ENSDARG00000017843	srsf1b	79	91.457	Danio_rerio
ENSIPUG00000017039	srsf1a	98	93.145	ENSDNOG00000011737	-	92	91.213	Dasypus_novemcinctus
ENSIPUG00000017039	srsf1a	98	93.145	ENSDORG00000015082	Srsf1	94	91.213	Dipodomys_ordii
ENSIPUG00000017039	srsf1a	74	88.172	ENSETEG00000005349	-	62	89.247	Echinops_telfairi
ENSIPUG00000017039	srsf1a	98	93.145	ENSEASG00005002922	-	92	91.213	Equus_asinus_asinus
ENSIPUG00000017039	srsf1a	79	93.467	ENSECAG00000016654	SRSF1	94	91.213	Equus_caballus
ENSIPUG00000017039	srsf1a	74	93.011	ENSEEUG00000009255	-	62	90.323	Erinaceus_europaeus
ENSIPUG00000017039	srsf1a	79	91.457	ENSELUG00000021646	srsf1a	76	89.447	Esox_lucius
ENSIPUG00000017039	srsf1a	98	93.145	ENSFCAG00000002250	-	92	91.213	Felis_catus
ENSIPUG00000017039	srsf1a	98	78.226	ENSFALG00000005062	-	96	78.226	Ficedula_albicollis
ENSIPUG00000017039	srsf1a	98	93.145	ENSFDAG00000010646	-	94	91.213	Fukomys_damarensis
ENSIPUG00000017039	srsf1a	80	88.557	ENSFHEG00000003174	srsf1a	84	86.567	Fundulus_heteroclitus
ENSIPUG00000017039	srsf1a	93	84.255	ENSGMOG00000014787	-	96	80.335	Gadus_morhua
ENSIPUG00000017039	srsf1a	79	94.975	ENSGALG00000005525	SRSF1	94	92.469	Gallus_gallus
ENSIPUG00000017039	srsf1a	79	84.422	ENSGACG00000020621	srsf1b	78	82.412	Gasterosteus_aculeatus
ENSIPUG00000017039	srsf1a	98	94.355	ENSGAGG00000022965	-	92	92.469	Gopherus_agassizii
ENSIPUG00000017039	srsf1a	98	93.145	ENSGGOG00000004386	SRSF1	95	94.203	Gorilla_gorilla
ENSIPUG00000017039	srsf1a	80	88.060	ENSHBUG00000016788	srsf1a	81	86.070	Haplochromis_burtoni
ENSIPUG00000017039	srsf1a	67	93.529	ENSHGLG00000000669	-	95	90.952	Heterocephalus_glaber_female
ENSIPUG00000017039	srsf1a	67	93.529	ENSHGLG00000000600	-	95	90.952	Heterocephalus_glaber_female
ENSIPUG00000017039	srsf1a	98	93.145	ENSHGLG00100016906	-	94	91.213	Heterocephalus_glaber_male
ENSIPUG00000017039	srsf1a	80	89.055	ENSHCOG00000018918	srsf1a	78	87.065	Hippocampus_comes
ENSIPUG00000017039	srsf1a	98	93.145	ENSSTOG00000000243	-	94	91.213	Ictidomys_tridecemlineatus
ENSIPUG00000017039	srsf1a	98	93.145	ENSJJAG00000000102	-	94	91.213	Jaculus_jaculus
ENSIPUG00000017039	srsf1a	51	86.047	ENSJJAG00000014464	-	92	83.846	Jaculus_jaculus
ENSIPUG00000017039	srsf1a	80	88.557	ENSKMAG00000019232	srsf1a	79	86.070	Kryptolebias_marmoratus
ENSIPUG00000017039	srsf1a	80	89.552	ENSLBEG00000020864	-	84	87.562	Labrus_bergylta
ENSIPUG00000017039	srsf1a	79	86.432	ENSLBEG00000015294	-	93	80.753	Labrus_bergylta
ENSIPUG00000017039	srsf1a	79	91.457	ENSLACG00000014160	srsf1a	88	89.212	Latimeria_chalumnae
ENSIPUG00000017039	srsf1a	79	93.970	ENSLOCG00000005994	srsf1a	94	89.958	Lepisosteus_oculatus
ENSIPUG00000017039	srsf1a	79	93.467	ENSLAFG00000025743	SRSF1	94	91.213	Loxodonta_africana
ENSIPUG00000017039	srsf1a	98	93.145	ENSMFAG00000040003	-	95	94.203	Macaca_fascicularis
ENSIPUG00000017039	srsf1a	99	89.960	ENSMMUG00000003260	-	93	88.442	Macaca_mulatta
ENSIPUG00000017039	srsf1a	98	93.145	ENSMMUG00000004725	SRSF1	95	94.203	Macaca_mulatta
ENSIPUG00000017039	srsf1a	99	89.558	ENSMNEG00000015983	-	92	88.703	Macaca_nemestrina
ENSIPUG00000017039	srsf1a	98	93.145	ENSMNEG00000027680	-	95	94.203	Macaca_nemestrina
ENSIPUG00000017039	srsf1a	98	86.694	ENSMLEG00000015243	-	92	86.611	Mandrillus_leucophaeus
ENSIPUG00000017039	srsf1a	79	93.467	ENSMLEG00000040509	SRSF1	94	91.213	Mandrillus_leucophaeus
ENSIPUG00000017039	srsf1a	80	88.557	ENSMAMG00000018454	-	79	86.567	Mastacembelus_armatus
ENSIPUG00000017039	srsf1a	79	91.960	ENSMAMG00000019691	-	80	89.447	Mastacembelus_armatus
ENSIPUG00000017039	srsf1a	79	86.432	ENSMAMG00000019687	-	94	81.590	Mastacembelus_armatus
ENSIPUG00000017039	srsf1a	98	93.145	ENSMAUG00000021845	Srsf1	94	91.213	Mesocricetus_auratus
ENSIPUG00000017039	srsf1a	98	93.145	ENSMICG00000013639	-	95	94.203	Microcebus_murinus
ENSIPUG00000017039	srsf1a	98	93.145	ENSMOCG00000001996	Srsf1	94	91.213	Microtus_ochrogaster
ENSIPUG00000017039	srsf1a	80	89.055	ENSMMOG00000014354	srsf1a	84	87.562	Mola_mola
ENSIPUG00000017039	srsf1a	74	94.086	ENSMODG00000014781	-	62	94.086	Monodelphis_domestica
ENSIPUG00000017039	srsf1a	80	88.060	ENSMALG00000017129	-	76	85.075	Monopterus_albus
ENSIPUG00000017039	srsf1a	82	79.126	ENSMALG00000007763	-	77	78.894	Monopterus_albus
ENSIPUG00000017039	srsf1a	98	93.145	MGP_CAROLIEiJ_G0016943	Srsf1	94	91.213	Mus_caroli
ENSIPUG00000017039	srsf1a	98	93.145	ENSMUSG00000018379	Srsf1	94	91.213	Mus_musculus
ENSIPUG00000017039	srsf1a	98	93.145	MGP_PahariEiJ_G0018074	Srsf1	94	91.213	Mus_pahari
ENSIPUG00000017039	srsf1a	98	93.145	MGP_SPRETEiJ_G0017790	Srsf1	94	91.213	Mus_spretus
ENSIPUG00000017039	srsf1a	79	93.467	ENSMPUG00000015369	SRSF1	94	91.213	Mustela_putorius_furo
ENSIPUG00000017039	srsf1a	79	93.467	ENSMLUG00000011040	SRSF1	94	91.213	Myotis_lucifugus
ENSIPUG00000017039	srsf1a	81	85.366	ENSMLUG00000023995	-	94	84.100	Myotis_lucifugus
ENSIPUG00000017039	srsf1a	79	93.467	ENSNGAG00000011395	Srsf1	94	91.213	Nannospalax_galili
ENSIPUG00000017039	srsf1a	99	78.000	ENSNBRG00000008041	srsf1b	78	80.402	Neolamprologus_brichardi
ENSIPUG00000017039	srsf1a	98	93.145	ENSNLEG00000008088	-	95	94.203	Nomascus_leucogenys
ENSIPUG00000017039	srsf1a	51	87.500	ENSMEUG00000002783	-	98	87.597	Notamacropus_eugenii
ENSIPUG00000017039	srsf1a	55	92.029	ENSOPRG00000001234	-	94	89.326	Ochotona_princeps
ENSIPUG00000017039	srsf1a	98	93.145	ENSODEG00000011481	-	94	91.213	Octodon_degus
ENSIPUG00000017039	srsf1a	80	92.079	ENSONIG00000004860	-	79	89.447	Oreochromis_niloticus
ENSIPUG00000017039	srsf1a	80	88.060	ENSONIG00000013160	-	78	86.070	Oreochromis_niloticus
ENSIPUG00000017039	srsf1a	99	67.717	ENSOCUG00000010894	-	75	70.051	Oryctolagus_cuniculus
ENSIPUG00000017039	srsf1a	80	88.557	ENSORLG00000004580	srsf1a	79	86.567	Oryzias_latipes
ENSIPUG00000017039	srsf1a	80	88.557	ENSORLG00020009456	srsf1a	84	86.567	Oryzias_latipes_hni
ENSIPUG00000017039	srsf1a	80	88.557	ENSORLG00015014384	srsf1a	84	86.567	Oryzias_latipes_hsok
ENSIPUG00000017039	srsf1a	72	86.813	ENSOMEG00000004106	srsf1a	88	78.027	Oryzias_melastigma
ENSIPUG00000017039	srsf1a	83	93.810	ENSOGAG00000025950	-	94	91.213	Otolemur_garnettii
ENSIPUG00000017039	srsf1a	79	87.437	ENSOARG00000008323	SRSF1	94	86.611	Ovis_aries
ENSIPUG00000017039	srsf1a	98	93.145	ENSPPAG00000043403	-	95	94.203	Pan_paniscus
ENSIPUG00000017039	srsf1a	98	93.145	ENSPPRG00000004238	-	94	91.213	Panthera_pardus
ENSIPUG00000017039	srsf1a	98	93.145	ENSPTRG00000049077	SRSF1	95	94.203	Pan_troglodytes
ENSIPUG00000017039	srsf1a	98	93.145	ENSPANG00000022305	-	95	94.203	Papio_anubis
ENSIPUG00000017039	srsf1a	99	70.635	ENSPANG00000030275	-	71	93.333	Papio_anubis
ENSIPUG00000017039	srsf1a	79	93.970	ENSPKIG00000012857	srsf1b	78	91.457	Paramormyrops_kingsleyae
ENSIPUG00000017039	srsf1a	79	92.500	ENSPKIG00000007204	srsf1a	95	89.167	Paramormyrops_kingsleyae
ENSIPUG00000017039	srsf1a	79	87.562	ENSPSIG00000009000	-	94	86.307	Pelodiscus_sinensis
ENSIPUG00000017039	srsf1a	80	90.050	ENSPMGG00000013112	-	80	89.362	Periophthalmus_magnuspinnatus
ENSIPUG00000017039	srsf1a	96	84.774	ENSPMGG00000005467	-	96	82.988	Periophthalmus_magnuspinnatus
ENSIPUG00000017039	srsf1a	98	93.145	ENSPEMG00000021416	Srsf1	94	91.213	Peromyscus_maniculatus_bairdii
ENSIPUG00000017039	srsf1a	79	94.472	ENSPCIG00000006076	-	94	92.050	Phascolarctos_cinereus
ENSIPUG00000017039	srsf1a	80	88.119	ENSPFOG00000018325	-	82	81.590	Poecilia_formosa
ENSIPUG00000017039	srsf1a	80	87.624	ENSPLAG00000008416	srsf1b	93	81.590	Poecilia_latipinna
ENSIPUG00000017039	srsf1a	80	87.624	ENSPMEG00000002388	-	93	81.590	Poecilia_mexicana
ENSIPUG00000017039	srsf1a	52	84.733	ENSPMEG00000020607	-	99	82.443	Poecilia_mexicana
ENSIPUG00000017039	srsf1a	52	84.733	ENSPMEG00000014312	-	99	82.443	Poecilia_mexicana
ENSIPUG00000017039	srsf1a	80	88.557	ENSPREG00000009667	srsf1a	79	86.567	Poecilia_reticulata
ENSIPUG00000017039	srsf1a	98	93.145	ENSPPYG00000008240	SRSF1	94	91.213	Pongo_abelii
ENSIPUG00000017039	srsf1a	79	93.467	ENSPCAG00000005199	SRSF1	94	91.213	Procavia_capensis
ENSIPUG00000017039	srsf1a	80	75.622	ENSPCOG00000025736	-	93	74.372	Propithecus_coquereli
ENSIPUG00000017039	srsf1a	98	93.145	ENSPCOG00000023654	-	95	94.203	Propithecus_coquereli
ENSIPUG00000017039	srsf1a	52	98.571	ENSPVAG00000000519	-	69	96.721	Pteropus_vampyrus
ENSIPUG00000017039	srsf1a	99	94.800	ENSPNAG00000022241	srsf1a	99	94.800	Pygocentrus_nattereri
ENSIPUG00000017039	srsf1a	79	90.955	ENSPNAG00000014601	srsf1b	94	85.774	Pygocentrus_nattereri
ENSIPUG00000017039	srsf1a	79	93.467	ENSRNOG00000050323	Srsf1	94	91.213	Rattus_norvegicus
ENSIPUG00000017039	srsf1a	98	93.145	ENSRBIG00000034445	-	95	94.203	Rhinopithecus_bieti
ENSIPUG00000017039	srsf1a	98	93.145	ENSRROG00000041506	-	95	94.203	Rhinopithecus_roxellana
ENSIPUG00000017039	srsf1a	98	93.145	ENSSBOG00000025377	-	95	94.203	Saimiri_boliviensis_boliviensis
ENSIPUG00000017039	srsf1a	79	94.472	ENSSHAG00000002552	-	94	92.050	Sarcophilus_harrisii
ENSIPUG00000017039	srsf1a	79	93.467	ENSSFOG00015004800	srsf1a	94	90.795	Scleropages_formosus
ENSIPUG00000017039	srsf1a	79	90.500	ENSSMAG00000009719	-	94	88.750	Scophthalmus_maximus
ENSIPUG00000017039	srsf1a	80	89.055	ENSSMAG00000007018	-	79	86.567	Scophthalmus_maximus
ENSIPUG00000017039	srsf1a	80	89.552	ENSSDUG00000011303	-	84	87.562	Seriola_dumerili
ENSIPUG00000017039	srsf1a	99	76.400	ENSSDUG00000003929	-	83	82.090	Seriola_dumerili
ENSIPUG00000017039	srsf1a	95	73.750	ENSSLDG00000016895	-	77	83.246	Seriola_lalandi_dorsalis
ENSIPUG00000017039	srsf1a	80	89.552	ENSSLDG00000010543	-	79	87.562	Seriola_lalandi_dorsalis
ENSIPUG00000017039	srsf1a	79	75.500	ENSSLDG00000016868	-	76	79.500	Seriola_lalandi_dorsalis
ENSIPUG00000017039	srsf1a	74	93.011	ENSSARG00000010949	-	62	90.323	Sorex_araneus
ENSIPUG00000017039	srsf1a	98	94.355	ENSSPUG00000000804	-	94	92.188	Sphenodon_punctatus
ENSIPUG00000017039	srsf1a	80	89.055	ENSSPAG00000022562	-	79	87.065	Stegastes_partitus
ENSIPUG00000017039	srsf1a	79	89.320	ENSSPAG00000014152	-	80	87.864	Stegastes_partitus
ENSIPUG00000017039	srsf1a	98	93.145	ENSSSCG00000017626	-	94	91.213	Sus_scrofa
ENSIPUG00000017039	srsf1a	55	94.245	ENSTGUG00000008416	-	94	91.061	Taeniopygia_guttata
ENSIPUG00000017039	srsf1a	80	88.060	ENSTRUG00000003691	srsf1a	79	86.070	Takifugu_rubripes
ENSIPUG00000017039	srsf1a	80	88.060	ENSTNIG00000016223	srsf1a	78	86.070	Tetraodon_nigroviridis
ENSIPUG00000017039	srsf1a	74	91.398	ENSTBEG00000015378	-	62	89.247	Tupaia_belangeri
ENSIPUG00000017039	srsf1a	55	92.029	ENSTTRG00000007310	SRSF1	94	89.326	Tursiops_truncatus
ENSIPUG00000017039	srsf1a	79	93.467	ENSUAMG00000009858	SRSF1	94	91.213	Ursus_americanus
ENSIPUG00000017039	srsf1a	98	93.145	ENSUMAG00000000455	-	92	91.213	Ursus_maritimus
ENSIPUG00000017039	srsf1a	79	92.965	ENSVPAG00000010094	SRSF1	94	90.795	Vicugna_pacos
ENSIPUG00000017039	srsf1a	98	93.145	ENSVVUG00000011882	-	92	91.213	Vulpes_vulpes
ENSIPUG00000017039	srsf1a	79	90.452	ENSXETG00000008954	srsf1	94	90.079	Xenopus_tropicalis
ENSIPUG00000017039	srsf1a	80	88.557	ENSXMAG00000011766	srsf1a	79	86.567	Xiphophorus_maculatus