EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000017147 (Gene tree)
Gene ID: 100528569
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 8656 bases
Position: chr24:4162369-4171024
Accession: 100528569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025408	zf-CCCH	PF00642.24	3.8e-20	1	2
ENSIPUP00000025408	zf-CCCH	PF00642.24	3.8e-20	2	2
ENSIPUP00000025408	zf-CCHC	PF00098.23	5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000026464	-	5772	-	ENSIPUP00000025408	271 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000017147's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017147's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017147	cpsf4	100	85.294	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSIPUG00000017147	cpsf4	68	74.317	ENSAPOG00000004921	cpsf4	100	72.678	Acanthochromis_polyacanthus
ENSIPUG00000017147	cpsf4	100	85.294	ENSAMEG00000006252	CPSF4	100	84.133	Ailuropoda_melanoleuca
ENSIPUG00000017147	cpsf4	100	81.181	ENSACIG00000009248	cpsf4	100	80.812	Amphilophus_citrinellus
ENSIPUG00000017147	cpsf4	100	84.133	ENSAOCG00000019616	cpsf4	100	83.026	Amphiprion_ocellaris
ENSIPUG00000017147	cpsf4	100	84.133	ENSAPEG00000011679	cpsf4	100	83.026	Amphiprion_percula
ENSIPUG00000017147	cpsf4	100	84.133	ENSATEG00000007010	cpsf4	100	83.026	Anabas_testudineus
ENSIPUG00000017147	cpsf4	100	82.288	ENSACAG00000012941	CPSF4	89	82.288	Anolis_carolinensis
ENSIPUG00000017147	cpsf4	100	85.294	ENSANAG00000021360	CPSF4	100	84.133	Aotus_nancymaae
ENSIPUG00000017147	cpsf4	100	85.240	ENSACLG00000010374	cpsf4	100	84.133	Astatotilapia_calliptera
ENSIPUG00000017147	cpsf4	100	90.406	ENSAMXG00000031647	cpsf4	100	90.406	Astyanax_mexicanus
ENSIPUG00000017147	cpsf4	100	79.705	ENSBTAG00000002090	CPSF4	100	78.967	Bos_taurus
ENSIPUG00000017147	cpsf4	100	85.294	ENSCJAG00000015826	CPSF4	100	84.133	Callithrix_jacchus
ENSIPUG00000017147	cpsf4	100	85.294	ENSCAFG00000015036	CPSF4	99	87.425	Canis_familiaris
ENSIPUG00000017147	cpsf4	100	80.882	ENSCAFG00020014462	CPSF4	100	79.705	Canis_lupus_dingo
ENSIPUG00000017147	cpsf4	100	85.662	ENSCHIG00000014313	CPSF4	100	84.502	Capra_hircus
ENSIPUG00000017147	cpsf4	100	79.336	ENSTSYG00000005712	-	100	77.860	Carlito_syrichta
ENSIPUG00000017147	cpsf4	89	74.074	ENSTSYG00000008195	-	99	72.619	Carlito_syrichta
ENSIPUG00000017147	cpsf4	100	72.426	ENSTSYG00000014604	-	100	70.956	Carlito_syrichta
ENSIPUG00000017147	cpsf4	82	84.753	ENSCAPG00000013881	CPSF4	88	82.589	Cavia_aperea
ENSIPUG00000017147	cpsf4	100	80.074	ENSCPOG00000001783	CPSF4	100	78.229	Cavia_porcellus
ENSIPUG00000017147	cpsf4	100	85.294	ENSCCAG00000028291	CPSF4	100	84.133	Cebus_capucinus
ENSIPUG00000017147	cpsf4	100	85.294	ENSCATG00000038440	CPSF4	100	84.133	Cercocebus_atys
ENSIPUG00000017147	cpsf4	100	85.294	ENSCLAG00000007050	CPSF4	100	84.133	Chinchilla_lanigera
ENSIPUG00000017147	cpsf4	100	85.294	ENSCSAG00000017795	CPSF4	100	84.133	Chlorocebus_sabaeus
ENSIPUG00000017147	cpsf4	61	79.394	ENSCPBG00000010269	-	100	78.916	Chrysemys_picta_bellii
ENSIPUG00000017147	cpsf4	80	83.945	ENSCPBG00000020869	CPSF4	100	83.945	Chrysemys_picta_bellii
ENSIPUG00000017147	cpsf4	97	55.344	ENSCING00000021080	-	97	56.015	Ciona_intestinalis
ENSIPUG00000017147	cpsf4	96	54.448	ENSCSAVG00000011469	-	97	54.255	Ciona_savignyi
ENSIPUG00000017147	cpsf4	100	85.294	ENSCANG00000019384	CPSF4	100	84.133	Colobus_angolensis_palliatus
ENSIPUG00000017147	cpsf4	100	80.074	ENSCGRG00001024184	Cpsf4	100	78.229	Cricetulus_griseus_chok1gshd
ENSIPUG00000017147	cpsf4	100	85.294	ENSCGRG00000013892	Cpsf4	100	84.133	Cricetulus_griseus_crigri
ENSIPUG00000017147	cpsf4	100	84.871	ENSCSEG00000019055	cpsf4	100	84.133	Cynoglossus_semilaevis
ENSIPUG00000017147	cpsf4	100	84.871	ENSCVAG00000016528	cpsf4	100	83.395	Cyprinodon_variegatus
ENSIPUG00000017147	cpsf4	100	86.765	ENSDARG00000020217	cpsf4	100	86.765	Danio_rerio
ENSIPUG00000017147	cpsf4	100	85.294	ENSDNOG00000006344	CPSF4	100	84.133	Dasypus_novemcinctus
ENSIPUG00000017147	cpsf4	81	84.545	ENSDORG00000000742	Cpsf4	100	83.105	Dipodomys_ordii
ENSIPUG00000017147	cpsf4	100	54.181	FBgn0015621	Clp	99	55.442	Drosophila_melanogaster
ENSIPUG00000017147	cpsf4	69	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSIPUG00000017147	cpsf4	99	65.428	ENSEBUG00000012552	cpsf4	98	65.056	Eptatretus_burgeri
ENSIPUG00000017147	cpsf4	100	80.074	ENSEASG00005002487	CPSF4	100	78.229	Equus_asinus_asinus
ENSIPUG00000017147	cpsf4	100	85.294	ENSECAG00000007525	CPSF4	100	84.133	Equus_caballus
ENSIPUG00000017147	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSIPUG00000017147	cpsf4	100	85.036	ENSELUG00000011481	cpsf4	100	83.577	Esox_lucius
ENSIPUG00000017147	cpsf4	100	85.294	ENSFCAG00000015070	CPSF4	100	84.133	Felis_catus
ENSIPUG00000017147	cpsf4	61	55.233	ENSFALG00000012906	-	100	55.233	Ficedula_albicollis
ENSIPUG00000017147	cpsf4	100	78.967	ENSFALG00000013799	CPSF4	100	77.122	Ficedula_albicollis
ENSIPUG00000017147	cpsf4	90	84.146	ENSFDAG00000014092	CPSF4	100	82.857	Fukomys_damarensis
ENSIPUG00000017147	cpsf4	100	84.871	ENSFHEG00000010880	cpsf4	100	83.395	Fundulus_heteroclitus
ENSIPUG00000017147	cpsf4	100	79.121	ENSGMOG00000002330	cpsf4	100	78.022	Gadus_morhua
ENSIPUG00000017147	cpsf4	99	36.269	ENSGALG00000004441	-	98	36.979	Gallus_gallus
ENSIPUG00000017147	cpsf4	100	79.705	ENSGALG00000004714	CPSF4	100	77.860	Gallus_gallus
ENSIPUG00000017147	cpsf4	100	84.502	ENSGAFG00000010580	cpsf4	100	83.026	Gambusia_affinis
ENSIPUG00000017147	cpsf4	100	79.487	ENSGACG00000007792	cpsf4	100	78.755	Gasterosteus_aculeatus
ENSIPUG00000017147	cpsf4	100	84.502	ENSGAGG00000021835	CPSF4	100	84.502	Gopherus_agassizii
ENSIPUG00000017147	cpsf4	67	75.275	ENSGAGG00000020579	-	92	79.394	Gopherus_agassizii
ENSIPUG00000017147	cpsf4	100	85.294	ENSGGOG00000015131	CPSF4	100	84.133	Gorilla_gorilla
ENSIPUG00000017147	cpsf4	100	85.240	ENSHBUG00000013699	cpsf4	100	84.133	Haplochromis_burtoni
ENSIPUG00000017147	cpsf4	100	84.249	ENSHGLG00000017150	CPSF4	100	83.516	Heterocephalus_glaber_female
ENSIPUG00000017147	cpsf4	75	58.738	ENSHGLG00100017302	-	84	65.934	Heterocephalus_glaber_male
ENSIPUG00000017147	cpsf4	87	81.513	ENSHGLG00100009215	-	100	80.672	Heterocephalus_glaber_male
ENSIPUG00000017147	cpsf4	100	82.117	ENSHCOG00000004397	cpsf4	100	81.387	Hippocampus_comes
ENSIPUG00000017147	cpsf4	100	85.294	ENSSTOG00000001688	CPSF4	100	84.133	Ictidomys_tridecemlineatus
ENSIPUG00000017147	cpsf4	100	85.294	ENSJJAG00000019426	Cpsf4	100	84.133	Jaculus_jaculus
ENSIPUG00000017147	cpsf4	100	81.919	ENSKMAG00000015642	cpsf4	100	80.443	Kryptolebias_marmoratus
ENSIPUG00000017147	cpsf4	100	82.657	ENSLACG00000010938	CPSF4	100	82.657	Latimeria_chalumnae
ENSIPUG00000017147	cpsf4	100	58.456	ENSLACG00000018470	-	100	58.088	Latimeria_chalumnae
ENSIPUG00000017147	cpsf4	100	85.609	ENSLOCG00000004814	cpsf4	100	85.609	Lepisosteus_oculatus
ENSIPUG00000017147	cpsf4	100	84.926	ENSLAFG00000000159	CPSF4	100	83.764	Loxodonta_africana
ENSIPUG00000017147	cpsf4	100	85.294	ENSMFAG00000001462	CPSF4	100	84.133	Macaca_fascicularis
ENSIPUG00000017147	cpsf4	100	85.294	ENSMMUG00000019191	CPSF4	100	84.133	Macaca_mulatta
ENSIPUG00000017147	cpsf4	100	85.294	ENSMNEG00000032306	CPSF4	100	84.133	Macaca_nemestrina
ENSIPUG00000017147	cpsf4	100	85.294	ENSMLEG00000034721	CPSF4	100	84.133	Mandrillus_leucophaeus
ENSIPUG00000017147	cpsf4	100	85.240	ENSMAMG00000006244	cpsf4	100	84.133	Mastacembelus_armatus
ENSIPUG00000017147	cpsf4	100	85.240	ENSMZEG00005007515	cpsf4	100	84.133	Maylandia_zebra
ENSIPUG00000017147	cpsf4	87	78.481	ENSMGAG00000004235	CPSF4	100	76.371	Meleagris_gallopavo
ENSIPUG00000017147	cpsf4	100	85.294	ENSMAUG00000021253	Cpsf4	100	84.133	Mesocricetus_auratus
ENSIPUG00000017147	cpsf4	100	85.294	ENSMICG00000017429	CPSF4	100	84.133	Microcebus_murinus
ENSIPUG00000017147	cpsf4	100	85.294	ENSMOCG00000014901	Cpsf4	100	84.133	Microtus_ochrogaster
ENSIPUG00000017147	cpsf4	100	84.926	ENSMMOG00000001813	cpsf4	100	83.824	Mola_mola
ENSIPUG00000017147	cpsf4	100	84.871	ENSMODG00000001367	CPSF4	100	84.871	Monodelphis_domestica
ENSIPUG00000017147	cpsf4	100	84.982	ENSMALG00000012611	cpsf4	100	84.249	Monopterus_albus
ENSIPUG00000017147	cpsf4	100	85.294	MGP_CAROLIEiJ_G0028012	Cpsf4	100	84.133	Mus_caroli
ENSIPUG00000017147	cpsf4	100	85.294	ENSMUSG00000029625	Cpsf4	100	84.133	Mus_musculus
ENSIPUG00000017147	cpsf4	100	85.294	MGP_PahariEiJ_G0024581	Cpsf4	100	84.133	Mus_pahari
ENSIPUG00000017147	cpsf4	100	85.294	MGP_SPRETEiJ_G0029013	Cpsf4	100	84.133	Mus_spretus
ENSIPUG00000017147	cpsf4	100	85.294	ENSMPUG00000016508	CPSF4	100	84.133	Mustela_putorius_furo
ENSIPUG00000017147	cpsf4	87	77.215	ENSMLUG00000010980	CPSF4	100	76.793	Myotis_lucifugus
ENSIPUG00000017147	cpsf4	100	85.294	ENSNGAG00000001567	Cpsf4	100	84.133	Nannospalax_galili
ENSIPUG00000017147	cpsf4	91	85.425	ENSNBRG00000003943	cpsf4	98	84.211	Neolamprologus_brichardi
ENSIPUG00000017147	cpsf4	100	81.919	ENSNLEG00000011074	CPSF4	100	81.181	Nomascus_leucogenys
ENSIPUG00000017147	cpsf4	100	84.871	ENSMEUG00000006955	CPSF4	100	84.871	Notamacropus_eugenii
ENSIPUG00000017147	cpsf4	100	84.926	ENSOPRG00000013663	CPSF4	100	83.764	Ochotona_princeps
ENSIPUG00000017147	cpsf4	100	85.294	ENSODEG00000011181	-	100	84.133	Octodon_degus
ENSIPUG00000017147	cpsf4	100	65.091	ENSODEG00000009779	-	100	65.091	Octodon_degus
ENSIPUG00000017147	cpsf4	99	67.790	ENSODEG00000018283	-	91	67.416	Octodon_degus
ENSIPUG00000017147	cpsf4	100	83.395	ENSONIG00000008495	cpsf4	100	82.288	Oreochromis_niloticus
ENSIPUG00000017147	cpsf4	100	52.857	ENSOANG00000009568	-	100	51.237	Ornithorhynchus_anatinus
ENSIPUG00000017147	cpsf4	87	83.122	ENSOANG00000007729	CPSF4	100	83.122	Ornithorhynchus_anatinus
ENSIPUG00000017147	cpsf4	100	84.926	ENSOCUG00000002437	CPSF4	70	83.764	Oryctolagus_cuniculus
ENSIPUG00000017147	cpsf4	100	84.871	ENSORLG00000022798	cpsf4	100	84.871	Oryzias_latipes
ENSIPUG00000017147	cpsf4	100	84.871	ENSORLG00020008548	cpsf4	100	84.871	Oryzias_latipes_hni
ENSIPUG00000017147	cpsf4	100	84.502	ENSORLG00015019575	cpsf4	100	84.502	Oryzias_latipes_hsok
ENSIPUG00000017147	cpsf4	100	83.764	ENSOMEG00000005176	cpsf4	100	83.764	Oryzias_melastigma
ENSIPUG00000017147	cpsf4	100	85.294	ENSOGAG00000010884	CPSF4	100	84.133	Otolemur_garnettii
ENSIPUG00000017147	cpsf4	100	75.000	ENSOARG00000018668	CPSF4	100	75.000	Ovis_aries
ENSIPUG00000017147	cpsf4	100	85.294	ENSPPAG00000043355	CPSF4	100	84.133	Pan_paniscus
ENSIPUG00000017147	cpsf4	100	85.294	ENSPPRG00000003134	CPSF4	100	84.133	Panthera_pardus
ENSIPUG00000017147	cpsf4	90	84.898	ENSPTIG00000005604	CPSF4	90	83.607	Panthera_tigris_altaica
ENSIPUG00000017147	cpsf4	100	85.294	ENSPTRG00000019453	CPSF4	100	84.133	Pan_troglodytes
ENSIPUG00000017147	cpsf4	100	85.294	ENSPANG00000023123	CPSF4	100	84.133	Papio_anubis
ENSIPUG00000017147	cpsf4	100	85.145	ENSPKIG00000014278	cpsf4	100	85.145	Paramormyrops_kingsleyae
ENSIPUG00000017147	cpsf4	80	83.486	ENSPSIG00000011229	CPSF4	100	83.486	Pelodiscus_sinensis
ENSIPUG00000017147	cpsf4	81	57.014	ENSPSIG00000018198	-	100	57.273	Pelodiscus_sinensis
ENSIPUG00000017147	cpsf4	100	73.063	ENSPMGG00000017735	cpsf4	100	73.432	Periophthalmus_magnuspinnatus
ENSIPUG00000017147	cpsf4	100	85.294	ENSPEMG00000004508	Cpsf4	100	84.133	Peromyscus_maniculatus_bairdii
ENSIPUG00000017147	cpsf4	100	84.871	ENSPCIG00000024776	CPSF4	100	84.871	Phascolarctos_cinereus
ENSIPUG00000017147	cpsf4	100	84.502	ENSPFOG00000014912	cpsf4	100	83.026	Poecilia_formosa
ENSIPUG00000017147	cpsf4	100	77.122	ENSPLAG00000009599	cpsf4	100	76.753	Poecilia_latipinna
ENSIPUG00000017147	cpsf4	100	84.502	ENSPMEG00000009790	cpsf4	100	83.026	Poecilia_mexicana
ENSIPUG00000017147	cpsf4	100	83.764	ENSPREG00000018166	cpsf4	100	82.288	Poecilia_reticulata
ENSIPUG00000017147	cpsf4	87	83.966	ENSPPYG00000017378	CPSF4	100	82.627	Pongo_abelii
ENSIPUG00000017147	cpsf4	100	84.926	ENSPCAG00000001892	CPSF4	100	83.764	Procavia_capensis
ENSIPUG00000017147	cpsf4	100	85.294	ENSPCOG00000012771	CPSF4	100	84.133	Propithecus_coquereli
ENSIPUG00000017147	cpsf4	100	80.147	ENSPVAG00000007531	CPSF4	100	78.967	Pteropus_vampyrus
ENSIPUG00000017147	cpsf4	100	85.240	ENSPNYG00000018559	cpsf4	100	84.133	Pundamilia_nyererei
ENSIPUG00000017147	cpsf4	100	92.251	ENSPNAG00000003736	cpsf4	100	92.251	Pygocentrus_nattereri
ENSIPUG00000017147	cpsf4	100	79.336	ENSRNOG00000000985	Cpsf4	100	78.598	Rattus_norvegicus
ENSIPUG00000017147	cpsf4	87	84.388	ENSRBIG00000033886	CPSF4	100	83.051	Rhinopithecus_bieti
ENSIPUG00000017147	cpsf4	100	79.705	ENSRROG00000040431	CPSF4	100	78.967	Rhinopithecus_roxellana
ENSIPUG00000017147	cpsf4	100	85.294	ENSSBOG00000020493	CPSF4	100	84.133	Saimiri_boliviensis_boliviensis
ENSIPUG00000017147	cpsf4	100	84.871	ENSSHAG00000011533	CPSF4	100	84.871	Sarcophilus_harrisii
ENSIPUG00000017147	cpsf4	100	86.232	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSIPUG00000017147	cpsf4	100	79.336	ENSSMAG00000006374	cpsf4	100	78.598	Scophthalmus_maximus
ENSIPUG00000017147	cpsf4	100	85.240	ENSSDUG00000018887	cpsf4	100	84.133	Seriola_dumerili
ENSIPUG00000017147	cpsf4	100	85.240	ENSSLDG00000019078	cpsf4	100	84.133	Seriola_lalandi_dorsalis
ENSIPUG00000017147	cpsf4	87	84.388	ENSSARG00000012416	CPSF4	100	83.051	Sorex_araneus
ENSIPUG00000017147	cpsf4	96	56.538	ENSSPUG00000014803	-	97	56.923	Sphenodon_punctatus
ENSIPUG00000017147	cpsf4	100	83.764	ENSSPUG00000003549	CPSF4	100	83.764	Sphenodon_punctatus
ENSIPUG00000017147	cpsf4	100	80.074	ENSSPAG00000006174	cpsf4	100	79.705	Stegastes_partitus
ENSIPUG00000017147	cpsf4	100	80.074	ENSSSCG00000026896	CPSF4	100	78.967	Sus_scrofa
ENSIPUG00000017147	cpsf4	100	78.022	ENSTGUG00000007552	CPSF4	100	76.190	Taeniopygia_guttata
ENSIPUG00000017147	cpsf4	100	81.550	ENSTRUG00000024220	cpsf4	100	80.443	Takifugu_rubripes
ENSIPUG00000017147	cpsf4	100	82.657	ENSTNIG00000006265	cpsf4	100	81.550	Tetraodon_nigroviridis
ENSIPUG00000017147	cpsf4	87	75.527	ENSTBEG00000011406	CPSF4	100	74.153	Tupaia_belangeri
ENSIPUG00000017147	cpsf4	100	72.694	ENSTTRG00000003007	CPSF4	76	95.455	Tursiops_truncatus
ENSIPUG00000017147	cpsf4	92	74.699	ENSUAMG00000008051	CPSF4	85	77.108	Ursus_americanus
ENSIPUG00000017147	cpsf4	100	79.336	ENSUMAG00000009474	CPSF4	100	78.598	Ursus_maritimus
ENSIPUG00000017147	cpsf4	100	80.074	ENSVVUG00000008824	CPSF4	100	78.229	Vulpes_vulpes
ENSIPUG00000017147	cpsf4	99	59.636	ENSXETG00000004641	cpsf4l	99	58.759	Xenopus_tropicalis
ENSIPUG00000017147	cpsf4	100	80.783	ENSXETG00000009892	cpsf4	100	80.783	Xenopus_tropicalis
ENSIPUG00000017147	cpsf4	100	84.133	ENSXCOG00000016040	cpsf4	100	82.657	Xiphophorus_couchianus
ENSIPUG00000017147	cpsf4	100	84.502	ENSXMAG00000024670	cpsf4	100	83.026	Xiphophorus_maculatus