EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000017559 (Gene tree)
Gene ID: 108273538
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5411 bases
Position: chr13:14232682-14238092
Accession: 108273538
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000025949	TruB_N	PF01509.18	1.3e-49	1	1
ENSIPUP00000025928	TruB_N	PF01509.18	1.3e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027023	-	855	-	ENSIPUP00000025949	284 (aa)	-	-
ENSIPUT00000027000	-	1991	XM_017482812	ENSIPUP00000025928	302 (aa)	XP_017338301	-

Gene Model

Click here to download ENSIPUG00000017559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017559	trub1	98	64.875	ENSG00000165832	TRUB1	80	64.875	Homo_sapiens
ENSIPUG00000017559	trub1	86	77.551	ENSAPOG00000020565	trub1	91	77.108	Acanthochromis_polyacanthus
ENSIPUG00000017559	trub1	97	65.468	ENSAMEG00000014931	TRUB1	79	65.468	Ailuropoda_melanoleuca
ENSIPUG00000017559	trub1	88	72.289	ENSACIG00000003060	trub1	83	72.289	Amphilophus_citrinellus
ENSIPUG00000017559	trub1	86	77.959	ENSAOCG00000017188	trub1	91	77.510	Amphiprion_ocellaris
ENSIPUG00000017559	trub1	87	77.823	ENSAPEG00000015209	trub1	91	77.510	Amphiprion_percula
ENSIPUG00000017559	trub1	86	77.459	ENSATEG00000023291	trub1	87	77.459	Anabas_testudineus
ENSIPUG00000017559	trub1	86	68.033	ENSAPLG00000006808	TRUB1	87	68.033	Anas_platyrhynchos
ENSIPUG00000017559	trub1	86	64.754	ENSACAG00000009282	TRUB1	88	64.754	Anolis_carolinensis
ENSIPUG00000017559	trub1	97	65.580	ENSANAG00000022870	TRUB1	79	65.580	Aotus_nancymaae
ENSIPUG00000017559	trub1	91	73.946	ENSACLG00000000823	trub1	94	73.946	Astatotilapia_calliptera
ENSIPUG00000017559	trub1	98	83.513	ENSAMXG00000015845	trub1	96	82.230	Astyanax_mexicanus
ENSIPUG00000017559	trub1	95	66.914	ENSBTAG00000012955	TRUB1	76	67.041	Bos_taurus
ENSIPUG00000017559	trub1	97	65.580	ENSCJAG00000047815	TRUB1	79	65.580	Callithrix_jacchus
ENSIPUG00000017559	trub1	97	65.580	ENSCAFG00000011688	TRUB1	79	65.580	Canis_familiaris
ENSIPUG00000017559	trub1	97	65.580	ENSCAFG00020013237	TRUB1	79	65.580	Canis_lupus_dingo
ENSIPUG00000017559	trub1	95	66.914	ENSCHIG00000020884	TRUB1	80	67.041	Capra_hircus
ENSIPUG00000017559	trub1	97	64.493	ENSTSYG00000000446	TRUB1	79	64.493	Carlito_syrichta
ENSIPUG00000017559	trub1	82	60.776	ENSCAPG00000017088	TRUB1	91	60.776	Cavia_aperea
ENSIPUG00000017559	trub1	64	68.852	ENSCPOG00000040236	-	75	68.852	Cavia_porcellus
ENSIPUG00000017559	trub1	69	66.837	ENSCPOG00000030129	-	76	66.837	Cavia_porcellus
ENSIPUG00000017559	trub1	94	66.667	ENSCCAG00000028842	TRUB1	76	66.667	Cebus_capucinus
ENSIPUG00000017559	trub1	95	66.058	ENSCATG00000033431	TRUB1	78	66.058	Cercocebus_atys
ENSIPUG00000017559	trub1	64	67.760	ENSCLAG00000008664	TRUB1	75	67.760	Chinchilla_lanigera
ENSIPUG00000017559	trub1	97	65.580	ENSCSAG00000004891	TRUB1	79	65.580	Chlorocebus_sabaeus
ENSIPUG00000017559	trub1	88	61.905	ENSCHOG00000011931	TRUB1	73	61.905	Choloepus_hoffmanni
ENSIPUG00000017559	trub1	92	68.077	ENSCPBG00000003051	TRUB1	90	68.077	Chrysemys_picta_bellii
ENSIPUG00000017559	trub1	97	65.580	ENSCANG00000029445	TRUB1	79	65.580	Colobus_angolensis_palliatus
ENSIPUG00000017559	trub1	91	58.301	ENSCGRG00001010322	-	71	58.113	Cricetulus_griseus_chok1gshd
ENSIPUG00000017559	trub1	82	66.524	ENSCGRG00001016772	-	78	66.809	Cricetulus_griseus_chok1gshd
ENSIPUG00000017559	trub1	91	65.251	ENSCGRG00000010806	Trub1	81	65.283	Cricetulus_griseus_crigri
ENSIPUG00000017559	trub1	87	71.660	ENSCSEG00000011261	trub1	89	66.787	Cynoglossus_semilaevis
ENSIPUG00000017559	trub1	90	78.039	ENSCVAG00000008791	trub1	78	78.039	Cyprinodon_variegatus
ENSIPUG00000017559	trub1	95	78.067	ENSDARG00000053805	trub1	97	75.265	Danio_rerio
ENSIPUG00000017559	trub1	94	64.045	ENSDNOG00000001069	TRUB1	76	64.045	Dasypus_novemcinctus
ENSIPUG00000017559	trub1	92	65.769	ENSDORG00000010431	Trub1	77	65.789	Dipodomys_ordii
ENSIPUG00000017559	trub1	70	66.176	ENSETEG00000009183	TRUB1	56	66.176	Echinops_telfairi
ENSIPUG00000017559	trub1	97	64.855	ENSEASG00005014739	TRUB1	79	64.855	Equus_asinus_asinus
ENSIPUG00000017559	trub1	97	64.855	ENSECAG00000007177	TRUB1	79	64.855	Equus_caballus
ENSIPUG00000017559	trub1	94	58.271	ENSEEUG00000013993	TRUB1	74	58.712	Erinaceus_europaeus
ENSIPUG00000017559	trub1	87	83.806	ENSELUG00000000502	trub1	86	83.806	Esox_lucius
ENSIPUG00000017559	trub1	94	66.667	ENSFCAG00000031927	TRUB1	77	66.667	Felis_catus
ENSIPUG00000017559	trub1	76	68.981	ENSFALG00000002232	TRUB1	83	68.981	Ficedula_albicollis
ENSIPUG00000017559	trub1	64	69.399	ENSFDAG00000008140	TRUB1	75	69.399	Fukomys_damarensis
ENSIPUG00000017559	trub1	99	69.504	ENSFHEG00000004016	trub1	96	69.504	Fundulus_heteroclitus
ENSIPUG00000017559	trub1	87	67.206	ENSGALG00000009091	TRUB1	87	67.206	Gallus_gallus
ENSIPUG00000017559	trub1	87	74.899	ENSGAFG00000009193	trub1	87	74.899	Gambusia_affinis
ENSIPUG00000017559	trub1	69	75.635	ENSGACG00000015387	trub1	97	75.635	Gasterosteus_aculeatus
ENSIPUG00000017559	trub1	92	68.966	ENSGAGG00000009758	TRUB1	74	68.966	Gopherus_agassizii
ENSIPUG00000017559	trub1	98	64.875	ENSGGOG00000004583	TRUB1	80	64.875	Gorilla_gorilla
ENSIPUG00000017559	trub1	91	73.563	ENSHBUG00000016787	trub1	94	73.563	Haplochromis_burtoni
ENSIPUG00000017559	trub1	94	65.038	ENSHGLG00000015314	TRUB1	76	65.038	Heterocephalus_glaber_female
ENSIPUG00000017559	trub1	64	68.852	ENSHGLG00100009183	TRUB1	77	68.852	Heterocephalus_glaber_male
ENSIPUG00000017559	trub1	89	74.704	ENSHCOG00000017877	trub1	92	74.704	Hippocampus_comes
ENSIPUG00000017559	trub1	94	66.292	ENSSTOG00000003641	TRUB1	80	66.292	Ictidomys_tridecemlineatus
ENSIPUG00000017559	trub1	94	65.185	ENSJJAG00000011800	Trub1	79	65.185	Jaculus_jaculus
ENSIPUG00000017559	trub1	90	73.333	ENSKMAG00000006232	trub1	92	73.333	Kryptolebias_marmoratus
ENSIPUG00000017559	trub1	95	74.074	ENSLBEG00000026722	trub1	94	74.074	Labrus_bergylta
ENSIPUG00000017559	trub1	86	72.016	ENSLACG00000014885	TRUB1	81	72.016	Latimeria_chalumnae
ENSIPUG00000017559	trub1	91	74.031	ENSLOCG00000012979	trub1	88	74.031	Lepisosteus_oculatus
ENSIPUG00000017559	trub1	86	69.796	ENSLAFG00000015452	TRUB1	70	69.796	Loxodonta_africana
ENSIPUG00000017559	trub1	97	65.580	ENSMFAG00000031767	TRUB1	79	65.580	Macaca_fascicularis
ENSIPUG00000017559	trub1	97	65.580	ENSMMUG00000001902	TRUB1	79	65.580	Macaca_mulatta
ENSIPUG00000017559	trub1	97	59.783	ENSMNEG00000044646	TRUB1	78	59.783	Macaca_nemestrina
ENSIPUG00000017559	trub1	97	65.580	ENSMLEG00000042655	TRUB1	79	65.580	Mandrillus_leucophaeus
ENSIPUG00000017559	trub1	91	73.946	ENSMZEG00005024095	trub1	94	73.946	Maylandia_zebra
ENSIPUG00000017559	trub1	87	67.611	ENSMGAG00000011135	TRUB1	85	67.611	Meleagris_gallopavo
ENSIPUG00000017559	trub1	91	63.707	ENSMAUG00000011101	Trub1	81	62.545	Mesocricetus_auratus
ENSIPUG00000017559	trub1	97	64.855	ENSMICG00000016324	TRUB1	79	64.855	Microcebus_murinus
ENSIPUG00000017559	trub1	92	66.154	ENSMOCG00000017759	Trub1	83	64.855	Microtus_ochrogaster
ENSIPUG00000017559	trub1	93	67.547	ENSMODG00000009676	TRUB1	75	65.934	Monodelphis_domestica
ENSIPUG00000017559	trub1	93	65.283	MGP_CAROLIEiJ_G0023100	Trub1	79	65.299	Mus_caroli
ENSIPUG00000017559	trub1	93	64.528	ENSMUSG00000025086	Trub1	79	64.552	Mus_musculus
ENSIPUG00000017559	trub1	89	67.059	MGP_PahariEiJ_G0014588	Trub1	75	67.059	Mus_pahari
ENSIPUG00000017559	trub1	93	64.528	MGP_SPRETEiJ_G0024021	Trub1	79	64.552	Mus_spretus
ENSIPUG00000017559	trub1	97	66.304	ENSMPUG00000003556	TRUB1	79	66.304	Mustela_putorius_furo
ENSIPUG00000017559	trub1	95	65.441	ENSMLUG00000017686	TRUB1	80	65.441	Myotis_lucifugus
ENSIPUG00000017559	trub1	97	64.130	ENSNGAG00000018682	Trub1	79	64.130	Nannospalax_galili
ENSIPUG00000017559	trub1	90	73.828	ENSNBRG00000023393	trub1	91	73.828	Neolamprologus_brichardi
ENSIPUG00000017559	trub1	98	64.875	ENSNLEG00000016345	TRUB1	80	64.875	Nomascus_leucogenys
ENSIPUG00000017559	trub1	71	72.637	ENSMEUG00000006603	TRUB1	77	70.335	Notamacropus_eugenii
ENSIPUG00000017559	trub1	94	63.910	ENSOPRG00000009371	TRUB1	77	63.910	Ochotona_princeps
ENSIPUG00000017559	trub1	94	64.286	ENSODEG00000010854	TRUB1	76	64.286	Octodon_degus
ENSIPUG00000017559	trub1	88	75.904	ENSONIG00000007249	trub1	91	75.904	Oreochromis_niloticus
ENSIPUG00000017559	trub1	86	67.901	ENSOANG00000001556	TRUB1	83	66.270	Ornithorhynchus_anatinus
ENSIPUG00000017559	trub1	94	65.543	ENSOCUG00000009456	TRUB1	77	65.543	Oryctolagus_cuniculus
ENSIPUG00000017559	trub1	92	74.427	ENSORLG00000029719	trub1	94	74.525	Oryzias_latipes
ENSIPUG00000017559	trub1	92	74.046	ENSORLG00020016767	trub1	92	74.144	Oryzias_latipes_hni
ENSIPUG00000017559	trub1	92	74.809	ENSORLG00015014728	trub1	94	74.905	Oryzias_latipes_hsok
ENSIPUG00000017559	trub1	88	77.600	ENSOMEG00000014556	trub1	88	77.600	Oryzias_melastigma
ENSIPUG00000017559	trub1	97	65.580	ENSOGAG00000015895	TRUB1	79	65.580	Otolemur_garnettii
ENSIPUG00000017559	trub1	95	65.580	ENSOARG00000015591	TRUB1	78	65.693	Ovis_aries
ENSIPUG00000017559	trub1	98	64.875	ENSPPAG00000043645	TRUB1	80	64.875	Pan_paniscus
ENSIPUG00000017559	trub1	94	66.667	ENSPPRG00000007096	TRUB1	77	66.667	Panthera_pardus
ENSIPUG00000017559	trub1	94	66.667	ENSPTIG00000006378	TRUB1	77	66.667	Panthera_tigris_altaica
ENSIPUG00000017559	trub1	98	64.875	ENSPTRG00000002964	TRUB1	80	64.875	Pan_troglodytes
ENSIPUG00000017559	trub1	97	65.580	ENSPANG00000020712	TRUB1	79	65.580	Papio_anubis
ENSIPUG00000017559	trub1	62	77.841	ENSPKIG00000003852	trub1	76	77.841	Paramormyrops_kingsleyae
ENSIPUG00000017559	trub1	94	65.918	ENSPSIG00000012877	TRUB1	92	65.918	Pelodiscus_sinensis
ENSIPUG00000017559	trub1	94	69.373	ENSPMGG00000000075	trub1	97	69.373	Periophthalmus_magnuspinnatus
ENSIPUG00000017559	trub1	89	68.235	ENSPEMG00000011156	Trub1	75	68.235	Peromyscus_maniculatus_bairdii
ENSIPUG00000017559	trub1	94	67.164	ENSPCIG00000009729	TRUB1	75	65.942	Phascolarctos_cinereus
ENSIPUG00000017559	trub1	87	78.138	ENSPFOG00000009950	trub1	90	78.138	Poecilia_formosa
ENSIPUG00000017559	trub1	87	78.138	ENSPLAG00000013855	trub1	87	78.138	Poecilia_latipinna
ENSIPUG00000017559	trub1	87	78.138	ENSPMEG00000009064	trub1	89	78.138	Poecilia_mexicana
ENSIPUG00000017559	trub1	89	75.889	ENSPREG00000003343	trub1	91	75.889	Poecilia_reticulata
ENSIPUG00000017559	trub1	98	64.516	ENSPPYG00000002676	TRUB1	80	64.516	Pongo_abelii
ENSIPUG00000017559	trub1	95	59.480	ENSPCAG00000008427	TRUB1	76	59.480	Procavia_capensis
ENSIPUG00000017559	trub1	98	58.993	ENSPCOG00000024360	TRUB1	78	59.058	Propithecus_coquereli
ENSIPUG00000017559	trub1	71	71.782	ENSPVAG00000007575	TRUB1	77	71.782	Pteropus_vampyrus
ENSIPUG00000017559	trub1	91	73.946	ENSPNYG00000018614	trub1	94	73.946	Pundamilia_nyererei
ENSIPUG00000017559	trub1	99	72.695	ENSPNAG00000006881	trub1	98	70.270	Pygocentrus_nattereri
ENSIPUG00000017559	trub1	96	63.636	ENSRNOG00000017321	Trub1	81	63.636	Rattus_norvegicus
ENSIPUG00000017559	trub1	97	57.554	ENSRBIG00000033423	TRUB1	74	58.364	Rhinopithecus_bieti
ENSIPUG00000017559	trub1	97	65.580	ENSRROG00000033902	TRUB1	79	65.580	Rhinopithecus_roxellana
ENSIPUG00000017559	trub1	62	35.122	YNL292W	-	51	35.266	Saccharomyces_cerevisiae
ENSIPUG00000017559	trub1	97	65.580	ENSSBOG00000024237	TRUB1	79	65.580	Saimiri_boliviensis_boliviensis
ENSIPUG00000017559	trub1	82	68.220	ENSSHAG00000009346	TRUB1	79	68.220	Sarcophilus_harrisii
ENSIPUG00000017559	trub1	89	76.587	ENSSFOG00015022124	trub1	96	70.423	Scleropages_formosus
ENSIPUG00000017559	trub1	90	76.078	ENSSMAG00000001020	trub1	91	76.078	Scophthalmus_maximus
ENSIPUG00000017559	trub1	85	77.593	ENSSDUG00000016414	trub1	92	76.863	Seriola_dumerili
ENSIPUG00000017559	trub1	85	77.593	ENSSLDG00000015486	trub1	92	76.863	Seriola_lalandi_dorsalis
ENSIPUG00000017559	trub1	93	66.415	ENSSPUG00000001642	TRUB1	91	66.415	Sphenodon_punctatus
ENSIPUG00000017559	trub1	88	77.912	ENSSPAG00000001217	trub1	90	77.912	Stegastes_partitus
ENSIPUG00000017559	trub1	94	65.543	ENSSSCG00000010653	TRUB1	78	65.543	Sus_scrofa
ENSIPUG00000017559	trub1	86	68.980	ENSTGUG00000010971	TRUB1	87	68.980	Taeniopygia_guttata
ENSIPUG00000017559	trub1	81	56.769	ENSTBEG00000002880	TRUB1	90	56.769	Tupaia_belangeri
ENSIPUG00000017559	trub1	71	71.287	ENSTTRG00000005767	TRUB1	77	71.287	Tursiops_truncatus
ENSIPUG00000017559	trub1	97	65.942	ENSUAMG00000024876	TRUB1	79	65.942	Ursus_americanus
ENSIPUG00000017559	trub1	95	66.914	ENSUMAG00000002411	TRUB1	82	65.942	Ursus_maritimus
ENSIPUG00000017559	trub1	94	66.667	ENSVPAG00000005507	TRUB1	77	66.667	Vicugna_pacos
ENSIPUG00000017559	trub1	97	65.580	ENSVVUG00000010085	TRUB1	67	65.580	Vulpes_vulpes
ENSIPUG00000017559	trub1	95	63.469	ENSXETG00000023828	trub1	98	63.469	Xenopus_tropicalis
ENSIPUG00000017559	trub1	85	76.667	ENSXCOG00000017847	trub1	85	76.667	Xiphophorus_couchianus
ENSIPUG00000017559	trub1	87	77.328	ENSXMAG00000014701	trub1	89	77.328	Xiphophorus_maculatus