EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000017720 (Gene tree)
Gene ID: 108268856
Gene Symbol: arl13a
Alias: zgc:73398
Full Name: ADP ribosylation factor like GTPase 13A
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 7890 bases
Position: chr8:5849779-5857668
Accession: 108268856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026260	MMR_HSR1	PF01926.23	1.7e-05	1	1
ENSIPUP00000026238	MMR_HSR1	PF01926.23	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027283	-	1784	XM_017474127	ENSIPUP00000026202	434 (aa)	XP_017329616	A0A2D0RHJ4
ENSIPUT00000027318	-	1227	XM_017474128	ENSIPUP00000026238	408 (aa)	XP_017329617	-
ENSIPUT00000027340	-	1152	-	ENSIPUP00000026260	383 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000017720's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017720's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000017720	arl13a	50	31.088	ENSIPUG00000003931	arl2	95	32.086

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017720	arl13a	99	60.341	ENSACIG00000012235	arl13a	99	59.124	Amphilophus_citrinellus
ENSIPUG00000017720	arl13a	99	57.831	ENSAOCG00000024309	arl13a	95	56.386	Amphiprion_ocellaris
ENSIPUG00000017720	arl13a	99	60.628	ENSAPEG00000006626	arl13a	94	60.870	Amphiprion_percula
ENSIPUG00000017720	arl13a	99	60.621	ENSATEG00000018113	arl13a	99	61.954	Anabas_testudineus
ENSIPUG00000017720	arl13a	99	59.806	ENSACLG00000000738	arl13a	99	60.804	Astatotilapia_calliptera
ENSIPUG00000017720	arl13a	100	63.549	ENSAMXG00000021495	arl13a	100	64.439	Astyanax_mexicanus
ENSIPUG00000017720	arl13a	57	44.700	ENSCPBG00000014304	ARL13A	81	44.860	Chrysemys_picta_bellii
ENSIPUG00000017720	arl13a	53	37.143	ENSCGRG00001021947	Arl13a	55	37.619	Cricetulus_griseus_chok1gshd
ENSIPUG00000017720	arl13a	53	37.143	ENSCGRG00000007297	Arl13a	55	37.619	Cricetulus_griseus_crigri
ENSIPUG00000017720	arl13a	99	50.469	ENSCSEG00000002533	arl13a	99	49.531	Cynoglossus_semilaevis
ENSIPUG00000017720	arl13a	99	60.577	ENSCVAG00000005783	arl13a	99	59.601	Cyprinodon_variegatus
ENSIPUG00000017720	arl13a	99	64.029	ENSDARG00000052575	arl13a	94	64.748	Danio_rerio
ENSIPUG00000017720	arl13a	99	60.817	ENSFHEG00000017023	arl13a	93	60.337	Fundulus_heteroclitus
ENSIPUG00000017720	arl13a	98	60.957	ENSGAFG00000019994	arl13a	99	57.179	Gambusia_affinis
ENSIPUG00000017720	arl13a	99	56.250	ENSGACG00000017318	arl13a	99	57.108	Gasterosteus_aculeatus
ENSIPUG00000017720	arl13a	99	61.205	ENSHBUG00000016100	arl13a	94	62.019	Haplochromis_burtoni
ENSIPUG00000017720	arl13a	99	56.595	ENSHCOG00000005206	arl13a	99	55.875	Hippocampus_comes
ENSIPUG00000017720	arl13a	99	58.413	ENSKMAG00000001139	arl13a	93	58.111	Kryptolebias_marmoratus
ENSIPUG00000017720	arl13a	98	61.183	ENSLBEG00000028724	arl13a	99	60.204	Labrus_bergylta
ENSIPUG00000017720	arl13a	99	50.481	ENSLOCG00000015307	arl13a	94	48.916	Lepisosteus_oculatus
ENSIPUG00000017720	arl13a	99	58.937	ENSMAMG00000020385	arl13a	99	58.654	Mastacembelus_armatus
ENSIPUG00000017720	arl13a	99	61.205	ENSMZEG00005007052	arl13a	99	62.019	Maylandia_zebra
ENSIPUG00000017720	arl13a	53	37.619	ENSMAUG00000010729	-	51	38.537	Mesocricetus_auratus
ENSIPUG00000017720	arl13a	53	37.619	ENSMAUG00000001355	-	51	38.537	Mesocricetus_auratus
ENSIPUG00000017720	arl13a	98	56.010	ENSMMOG00000000880	arl13a	99	56.010	Mola_mola
ENSIPUG00000017720	arl13a	98	56.579	ENSMALG00000009029	arl13a	99	56.728	Monopterus_albus
ENSIPUG00000017720	arl13a	53	39.713	MGP_CAROLIEiJ_G0033386	Arl13a	53	41.176	Mus_caroli
ENSIPUG00000017720	arl13a	53	40.191	ENSMUSG00000052549	Arl13a	54	41.667	Mus_musculus
ENSIPUG00000017720	arl13a	53	39.713	MGP_PahariEiJ_G0031926	Arl13a	53	40.686	Mus_pahari
ENSIPUG00000017720	arl13a	53	40.191	MGP_SPRETEiJ_G0034551	Arl13a	53	41.667	Mus_spretus
ENSIPUG00000017720	arl13a	99	61.446	ENSNBRG00000021766	arl13a	99	60.964	Neolamprologus_brichardi
ENSIPUG00000017720	arl13a	99	62.110	ENSONIG00000002645	arl13a	99	61.631	Oreochromis_niloticus
ENSIPUG00000017720	arl13a	99	59.135	ENSORLG00000001425	arl13a	94	59.809	Oryzias_latipes
ENSIPUG00000017720	arl13a	99	58.654	ENSORLG00020021844	arl13a	94	59.330	Oryzias_latipes_hni
ENSIPUG00000017720	arl13a	99	58.894	ENSORLG00015011862	arl13a	99	59.569	Oryzias_latipes_hsok
ENSIPUG00000017720	arl13a	99	58.473	ENSOMEG00000015603	arl13a	94	59.759	Oryzias_melastigma
ENSIPUG00000017720	arl13a	99	50.474	ENSPKIG00000013558	arl13a	97	49.644	Paramormyrops_kingsleyae
ENSIPUG00000017720	arl13a	60	45.614	ENSPSIG00000003515	ARL13A	100	45.982	Pelodiscus_sinensis
ENSIPUG00000017720	arl13a	99	55.610	ENSPMGG00000017973	arl13a	99	55.314	Periophthalmus_magnuspinnatus
ENSIPUG00000017720	arl13a	99	57.831	ENSPFOG00000016707	arl13a	93	58.313	Poecilia_formosa
ENSIPUG00000017720	arl13a	98	58.376	ENSPLAG00000011307	arl13a	99	58.883	Poecilia_latipinna
ENSIPUG00000017720	arl13a	99	58.894	ENSPMEG00000017855	arl13a	93	59.375	Poecilia_mexicana
ENSIPUG00000017720	arl13a	99	58.173	ENSPREG00000011435	arl13a	93	58.654	Poecilia_reticulata
ENSIPUG00000017720	arl13a	99	59.806	ENSPNYG00000011485	arl13a	99	60.804	Pundamilia_nyererei
ENSIPUG00000017720	arl13a	53	40.670	ENSRNOG00000055454	Arl13a	51	41.667	Rattus_norvegicus
ENSIPUG00000017720	arl13a	99	54.126	ENSSFOG00015010065	arl13a	99	54.237	Scleropages_formosus
ENSIPUG00000017720	arl13a	99	58.072	ENSSMAG00000013557	arl13a	99	57.831	Scophthalmus_maximus
ENSIPUG00000017720	arl13a	98	60.630	ENSSDUG00000000933	arl13a	99	61.155	Seriola_dumerili
ENSIPUG00000017720	arl13a	99	62.350	ENSSLDG00000009973	arl13a	94	62.110	Seriola_lalandi_dorsalis
ENSIPUG00000017720	arl13a	98	58.793	ENSSPAG00000009109	arl13a	99	60.630	Stegastes_partitus
ENSIPUG00000017720	arl13a	99	58.213	ENSXCOG00000016270	arl13a	99	58.354	Xiphophorus_couchianus
ENSIPUG00000017720	arl13a	99	59.712	ENSXMAG00000013485	arl13a	99	56.468	Xiphophorus_maculatus