EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000017839 (Gene tree)
Gene ID: 108268854
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 17287 bases
Position: chr8:5889475-5906761
Accession: 108268854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026360	RRM_1	PF00076.22	1.5e-24	1	1
ENSIPUP00000026337	RRM_1	PF00076.22	1.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027442	-	1632	XM_017474124	ENSIPUP00000026360	503 (aa)	XP_017329613	A0A2D0RGF0
ENSIPUT00000027419	-	1692	XM_017474123	ENSIPUP00000026337	523 (aa)	XP_017329612	A0A2D0RGE0

Gene Model

Click here to download ENSIPUG00000017839's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017839's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017839	cstf2	99	60.956	ENSG00000101811	CSTF2	80	91.713	Homo_sapiens
ENSIPUG00000017839	cstf2	97	63.315	ENSAPOG00000005630	cstf2	98	70.886	Acanthochromis_polyacanthus
ENSIPUG00000017839	cstf2	99	58.987	ENSAMEG00000002082	CSTF2	91	66.518	Ailuropoda_melanoleuca
ENSIPUG00000017839	cstf2	97	65.278	ENSACIG00000012852	cstf2	100	70.510	Amphilophus_citrinellus
ENSIPUG00000017839	cstf2	98	68.450	ENSAOCG00000020905	cstf2	100	69.697	Amphiprion_ocellaris
ENSIPUG00000017839	cstf2	98	68.450	ENSAPEG00000006526	cstf2	100	69.742	Amphiprion_percula
ENSIPUG00000017839	cstf2	95	61.775	ENSAPLG00000007255	CSTF2	91	67.907	Anas_platyrhynchos
ENSIPUG00000017839	cstf2	99	65.828	ENSANAG00000022342	CSTF2	100	59.802	Aotus_nancymaae
ENSIPUG00000017839	cstf2	68	100.000	ENSAMXG00000021477	cstf2	100	94.737	Astyanax_mexicanus
ENSIPUG00000017839	cstf2	99	60.399	ENSBTAG00000003547	CSTF2	73	69.351	Bos_taurus
ENSIPUG00000017839	cstf2	99	60.891	ENSCJAG00000004422	CSTF2	100	60.118	Callithrix_jacchus
ENSIPUG00000017839	cstf2	99	58.362	ENSCAFG00000017551	CSTF2	81	69.789	Canis_familiaris
ENSIPUG00000017839	cstf2	99	60.066	ENSCAFG00020007619	CSTF2	100	66.667	Canis_lupus_dingo
ENSIPUG00000017839	cstf2	99	60.496	ENSCHIG00000016994	CSTF2	73	69.575	Capra_hircus
ENSIPUG00000017839	cstf2	99	61.628	ENSTSYG00000006529	CSTF2	100	67.411	Carlito_syrichta
ENSIPUG00000017839	cstf2	99	60.033	ENSCPOG00000015255	CSTF2	87	88.679	Cavia_porcellus
ENSIPUG00000017839	cstf2	99	60.891	ENSCCAG00000032975	CSTF2	100	59.967	Cebus_capucinus
ENSIPUG00000017839	cstf2	99	61.263	ENSCATG00000022835	CSTF2	100	59.966	Cercocebus_atys
ENSIPUG00000017839	cstf2	99	61.412	ENSCLAG00000001904	CSTF2	87	88.679	Chinchilla_lanigera
ENSIPUG00000017839	cstf2	99	61.120	ENSCSAG00000010360	CSTF2	100	59.308	Chlorocebus_sabaeus
ENSIPUG00000017839	cstf2	99	73.832	ENSCPBG00000014293	CSTF2	90	72.365	Chrysemys_picta_bellii
ENSIPUG00000017839	cstf2	99	61.263	ENSCANG00000030612	CSTF2	100	59.966	Colobus_angolensis_palliatus
ENSIPUG00000017839	cstf2	99	59.354	ENSCGRG00001023023	Cstf2	72	69.746	Cricetulus_griseus_chok1gshd
ENSIPUG00000017839	cstf2	99	61.364	ENSCGRG00000003897	Cstf2	100	61.806	Cricetulus_griseus_crigri
ENSIPUG00000017839	cstf2	97	84.805	ENSDARG00000090788	cstf2	100	91.781	Danio_rerio
ENSIPUG00000017839	cstf2	99	61.224	ENSDORG00000007195	Cstf2	85	90.909	Dipodomys_ordii
ENSIPUG00000017839	cstf2	82	70.520	ENSETEG00000004931	CSTF2	67	68.497	Echinops_telfairi
ENSIPUG00000017839	cstf2	99	60.891	ENSEASG00005001216	CSTF2	100	59.046	Equus_asinus_asinus
ENSIPUG00000017839	cstf2	99	60.891	ENSECAG00000009325	CSTF2	100	59.046	Equus_caballus
ENSIPUG00000017839	cstf2	99	60.396	ENSFCAG00000007000	CSTF2	73	70.246	Felis_catus
ENSIPUG00000017839	cstf2	90	56.842	ENSFALG00000003859	CSTF2	94	65.196	Ficedula_albicollis
ENSIPUG00000017839	cstf2	99	61.499	ENSFDAG00000002416	CSTF2	100	63.312	Fukomys_damarensis
ENSIPUG00000017839	cstf2	97	61.183	ENSFHEG00000017065	cstf2	96	69.245	Fundulus_heteroclitus
ENSIPUG00000017839	cstf2	97	61.477	ENSGMOG00000005145	cstf2	99	69.368	Gadus_morhua
ENSIPUG00000017839	cstf2	99	62.355	ENSGALG00000006760	CSTF2	100	62.500	Gallus_gallus
ENSIPUG00000017839	cstf2	97	68.824	ENSGACG00000017326	cstf2	94	83.529	Gasterosteus_aculeatus
ENSIPUG00000017839	cstf2	99	73.009	ENSGAGG00000006037	CSTF2	90	71.694	Gopherus_agassizii
ENSIPUG00000017839	cstf2	99	61.092	ENSGGOG00000022267	CSTF2	100	60.137	Gorilla_gorilla
ENSIPUG00000017839	cstf2	99	53.103	ENSHGLG00000013455	-	73	58.661	Heterocephalus_glaber_female
ENSIPUG00000017839	cstf2	99	61.158	ENSHGLG00000000659	-	88	87.273	Heterocephalus_glaber_female
ENSIPUG00000017839	cstf2	99	61.158	ENSHGLG00100001130	-	88	87.273	Heterocephalus_glaber_male
ENSIPUG00000017839	cstf2	99	53.448	ENSHGLG00100015391	-	73	59.122	Heterocephalus_glaber_male
ENSIPUG00000017839	cstf2	97	66.348	ENSHCOG00000005157	cstf2	99	66.916	Hippocampus_comes
ENSIPUG00000017839	cstf2	99	61.168	ENSSTOG00000023445	CSTF2	87	88.679	Ictidomys_tridecemlineatus
ENSIPUG00000017839	cstf2	99	60.410	ENSJJAG00000020507	Cstf2	87	88.679	Jaculus_jaculus
ENSIPUG00000017839	cstf2	50	86.973	ENSKMAG00000001068	cstf2	98	69.962	Kryptolebias_marmoratus
ENSIPUG00000017839	cstf2	98	59.967	ENSLACG00000015927	CSTF2	99	58.979	Latimeria_chalumnae
ENSIPUG00000017839	cstf2	98	95.918	ENSLOCG00000015300	cstf2	80	95.918	Lepisosteus_oculatus
ENSIPUG00000017839	cstf2	99	60.922	ENSLAFG00000000474	CSTF2	100	70.862	Loxodonta_africana
ENSIPUG00000017839	cstf2	99	61.263	ENSMFAG00000043888	CSTF2	100	59.966	Macaca_fascicularis
ENSIPUG00000017839	cstf2	99	61.551	ENSMMUG00000013008	CSTF2	100	60.531	Macaca_mulatta
ENSIPUG00000017839	cstf2	99	61.551	ENSMNEG00000041824	CSTF2	100	60.299	Macaca_nemestrina
ENSIPUG00000017839	cstf2	99	61.263	ENSMLEG00000036870	CSTF2	100	59.966	Mandrillus_leucophaeus
ENSIPUG00000017839	cstf2	95	65.089	ENSMAMG00000020364	cstf2	96	68.371	Mastacembelus_armatus
ENSIPUG00000017839	cstf2	85	85.714	ENSMGAG00000004139	CSTF2	100	60.086	Meleagris_gallopavo
ENSIPUG00000017839	cstf2	99	59.524	ENSMAUG00000000965	Cstf2	72	71.132	Mesocricetus_auratus
ENSIPUG00000017839	cstf2	99	61.881	ENSMICG00000014121	CSTF2	100	68.304	Microcebus_murinus
ENSIPUG00000017839	cstf2	99	59.694	ENSMOCG00000008081	Cstf2	100	59.864	Microtus_ochrogaster
ENSIPUG00000017839	cstf2	98	66.301	ENSMMOG00000000538	cstf2	100	87.815	Mola_mola
ENSIPUG00000017839	cstf2	99	61.770	ENSMODG00000011785	CSTF2	100	61.730	Monodelphis_domestica
ENSIPUG00000017839	cstf2	99	59.354	MGP_CAROLIEiJ_G0033383	Cstf2	86	89.873	Mus_caroli
ENSIPUG00000017839	cstf2	99	59.354	ENSMUSG00000031256	Cstf2	86	89.873	Mus_musculus
ENSIPUG00000017839	cstf2	99	60.647	MGP_PahariEiJ_G0031923	Cstf2	100	60.526	Mus_pahari
ENSIPUG00000017839	cstf2	99	59.354	MGP_SPRETEiJ_G0034548	Cstf2	86	89.873	Mus_spretus
ENSIPUG00000017839	cstf2	99	55.869	ENSMPUG00000002339	CSTF2	91	66.105	Mustela_putorius_furo
ENSIPUG00000017839	cstf2	99	56.723	ENSMLUG00000004598	CSTF2	98	63.202	Myotis_lucifugus
ENSIPUG00000017839	cstf2	99	60.477	ENSNGAG00000021985	Cstf2	72	71.528	Nannospalax_galili
ENSIPUG00000017839	cstf2	94	65.483	ENSNBRG00000021694	cstf2	100	69.488	Neolamprologus_brichardi
ENSIPUG00000017839	cstf2	99	60.922	ENSNLEG00000007510	CSTF2	100	60.653	Nomascus_leucogenys
ENSIPUG00000017839	cstf2	88	58.891	ENSMEUG00000014025	-	100	61.553	Notamacropus_eugenii
ENSIPUG00000017839	cstf2	99	60.312	ENSMEUG00000011186	-	100	62.787	Notamacropus_eugenii
ENSIPUG00000017839	cstf2	99	63.139	ENSMEUG00000007875	-	100	58.520	Notamacropus_eugenii
ENSIPUG00000017839	cstf2	78	76.166	ENSOPRG00000003106	CSTF2	82	76.166	Ochotona_princeps
ENSIPUG00000017839	cstf2	99	62.010	ENSODEG00000002059	CSTF2	100	60.307	Octodon_degus
ENSIPUG00000017839	cstf2	98	58.347	ENSONIG00000002631	cstf2	99	59.306	Oreochromis_niloticus
ENSIPUG00000017839	cstf2	89	85.714	ENSOANG00000004208	CSTF2	71	85.714	Ornithorhynchus_anatinus
ENSIPUG00000017839	cstf2	99	59.796	ENSOCUG00000010468	CSTF2	100	70.726	Oryctolagus_cuniculus
ENSIPUG00000017839	cstf2	97	66.475	ENSORLG00000001380	cstf2	98	66.792	Oryzias_latipes
ENSIPUG00000017839	cstf2	97	66.475	ENSORLG00020021917	cstf2	98	66.792	Oryzias_latipes_hni
ENSIPUG00000017839	cstf2	97	66.475	ENSORLG00015011996	cstf2	98	66.792	Oryzias_latipes_hsok
ENSIPUG00000017839	cstf2	97	65.985	ENSOMEG00000015507	cstf2	98	68.679	Oryzias_melastigma
ENSIPUG00000017839	cstf2	99	56.942	ENSOGAG00000011192	CSTF2	100	56.897	Otolemur_garnettii
ENSIPUG00000017839	cstf2	99	60.342	ENSOARG00000001022	CSTF2	100	66.370	Ovis_aries
ENSIPUG00000017839	cstf2	99	61.092	ENSPPAG00000031804	CSTF2	100	60.137	Pan_paniscus
ENSIPUG00000017839	cstf2	99	60.396	ENSPPRG00000022492	CSTF2	73	70.022	Panthera_pardus
ENSIPUG00000017839	cstf2	99	60.066	ENSPTIG00000009922	CSTF2	73	69.575	Panthera_tigris_altaica
ENSIPUG00000017839	cstf2	99	61.092	ENSPTRG00000022090	CSTF2	100	60.137	Pan_troglodytes
ENSIPUG00000017839	cstf2	99	66.457	ENSPANG00000002303	CSTF2	100	59.966	Papio_anubis
ENSIPUG00000017839	cstf2	100	76.103	ENSPKIG00000005033	cstf2	100	73.438	Paramormyrops_kingsleyae
ENSIPUG00000017839	cstf2	97	67.921	ENSPMGG00000006534	cstf2	98	72.106	Periophthalmus_magnuspinnatus
ENSIPUG00000017839	cstf2	99	59.184	ENSPEMG00000019415	Cstf2	72	70.670	Peromyscus_maniculatus_bairdii
ENSIPUG00000017839	cstf2	95	60.276	ENSPCIG00000002989	CSTF2	100	61.258	Phascolarctos_cinereus
ENSIPUG00000017839	cstf2	99	60.791	ENSPPYG00000020541	CSTF2	100	59.308	Pongo_abelii
ENSIPUG00000017839	cstf2	99	61.551	ENSPCOG00000027744	CSTF2	100	67.857	Propithecus_coquereli
ENSIPUG00000017839	cstf2	95	46.290	ENSPVAG00000008342	CSTF2	91	58.621	Pteropus_vampyrus
ENSIPUG00000017839	cstf2	98	90.430	ENSPNAG00000018887	cstf2	100	90.458	Pygocentrus_nattereri
ENSIPUG00000017839	cstf2	99	59.625	ENSRNOG00000048025	Cstf2	83	71.082	Rattus_norvegicus
ENSIPUG00000017839	cstf2	99	61.644	ENSRBIG00000030745	CSTF2	100	60.345	Rhinopithecus_bieti
ENSIPUG00000017839	cstf2	99	61.263	ENSRROG00000045042	CSTF2	100	59.966	Rhinopithecus_roxellana
ENSIPUG00000017839	cstf2	99	65.618	ENSSBOG00000021649	CSTF2	100	59.967	Saimiri_boliviensis_boliviensis
ENSIPUG00000017839	cstf2	90	85.714	ENSSHAG00000003681	CSTF2	71	85.714	Sarcophilus_harrisii
ENSIPUG00000017839	cstf2	98	75.651	ENSSFOG00015006348	cstf2	100	75.681	Scleropages_formosus
ENSIPUG00000017839	cstf2	97	63.689	ENSSMAG00000013463	cstf2	98	70.209	Scophthalmus_maximus
ENSIPUG00000017839	cstf2	99	60.421	ENSSPUG00000005288	-	100	61.905	Sphenodon_punctatus
ENSIPUG00000017839	cstf2	99	60.732	ENSSSCG00000012486	CSTF2	100	60.236	Sus_scrofa
ENSIPUG00000017839	cstf2	82	72.979	ENSTGUG00000002253	CSTF2	93	71.528	Taeniopygia_guttata
ENSIPUG00000017839	cstf2	98	71.402	ENSTNIG00000016860	cstf2	99	69.118	Tetraodon_nigroviridis
ENSIPUG00000017839	cstf2	99	58.703	ENSTTRG00000013556	CSTF2	72	70.093	Tursiops_truncatus
ENSIPUG00000017839	cstf2	99	58.785	ENSUAMG00000026605	CSTF2	91	66.890	Ursus_americanus
ENSIPUG00000017839	cstf2	99	64.035	ENSUMAG00000012417	CSTF2	86	78.295	Ursus_maritimus
ENSIPUG00000017839	cstf2	78	72.334	ENSVPAG00000006466	CSTF2	72	72.414	Vicugna_pacos
ENSIPUG00000017839	cstf2	99	58.362	ENSVVUG00000004717	CSTF2	72	69.789	Vulpes_vulpes
ENSIPUG00000017839	cstf2	99	67.043	ENSXETG00000009642	cstf2	100	67.954	Xenopus_tropicalis
ENSIPUG00000017839	cstf2	66	98.485	ENSXCOG00000016436	cstf2	98	87.059	Xiphophorus_couchianus
ENSIPUG00000017839	cstf2	68	72.464	ENSXMAG00000013524	cstf2	100	60.906	Xiphophorus_maculatus