EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000017855 (Gene tree)
Gene ID: 108273976
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 23968 bases
Position: chr13:14640092-14664059
Accession: 108273976
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026465	AARP2CN	PF08142.12	1.1e-30	1	1
ENSIPUP00000026433	AARP2CN	PF08142.12	1.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027519	-	5095	-	ENSIPUP00000026433	1291 (aa)	-	-
ENSIPUT00000027555	-	4996	XM_017483697	ENSIPUP00000026465	1258 (aa)	XP_017339186	A0A2D0S8W6

Gene Model

Click here to download ENSIPUG00000017855's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017855	bms1	99	60.790	ENSG00000165733	BMS1	55	63.738	Homo_sapiens
ENSIPUG00000017855	bms1	74	78.906	ENSAPOG00000002296	bms1	100	71.135	Acanthochromis_polyacanthus
ENSIPUG00000017855	bms1	60	58.787	ENSAMEG00000016834	BMS1	96	73.016	Ailuropoda_melanoleuca
ENSIPUG00000017855	bms1	92	84.673	ENSACIG00000002588	bms1	95	84.289	Amphilophus_citrinellus
ENSIPUG00000017855	bms1	92	75.266	ENSAOCG00000018088	bms1	99	71.767	Amphiprion_ocellaris
ENSIPUG00000017855	bms1	91	75.909	ENSAPEG00000014673	bms1	99	71.643	Amphiprion_percula
ENSIPUG00000017855	bms1	99	73.031	ENSATEG00000023465	bms1	99	73.233	Anabas_testudineus
ENSIPUG00000017855	bms1	90	76.081	ENSAPLG00000003759	BMS1	97	76.093	Anas_platyrhynchos
ENSIPUG00000017855	bms1	93	71.783	ENSACAG00000004537	-	52	65.140	Anolis_carolinensis
ENSIPUG00000017855	bms1	99	70.730	ENSACLG00000001294	bms1	97	82.303	Astatotilapia_calliptera
ENSIPUG00000017855	bms1	77	88.865	ENSAMXG00000011236	bms1	100	78.414	Astyanax_mexicanus
ENSIPUG00000017855	bms1	94	73.363	ENSBTAG00000012878	BMS1	99	61.789	Bos_taurus
ENSIPUG00000017855	bms1	81	53.250	WBGene00022021	Y61A9LA.10	97	53.250	Caenorhabditis_elegans
ENSIPUG00000017855	bms1	99	60.989	ENSCJAG00000021705	BMS1	55	63.268	Callithrix_jacchus
ENSIPUG00000017855	bms1	93	64.325	ENSCAFG00000007114	BMS1	69	72.851	Canis_familiaris
ENSIPUG00000017855	bms1	93	64.325	ENSCAFG00020025282	BMS1	69	72.851	Canis_lupus_dingo
ENSIPUG00000017855	bms1	94	73.589	ENSCHIG00000023251	BMS1	99	61.912	Capra_hircus
ENSIPUG00000017855	bms1	94	64.045	ENSCAPG00000008652	BMS1	51	64.253	Cavia_aperea
ENSIPUG00000017855	bms1	99	49.885	ENSCCAG00000024969	-	99	49.084	Cebus_capucinus
ENSIPUG00000017855	bms1	99	60.866	ENSCATG00000030625	-	55	63.459	Cercocebus_atys
ENSIPUG00000017855	bms1	90	44.644	ENSCATG00000008695	-	58	60.125	Cercocebus_atys
ENSIPUG00000017855	bms1	99	60.955	ENSCLAG00000002446	BMS1	52	71.946	Chinchilla_lanigera
ENSIPUG00000017855	bms1	99	60.790	ENSCSAG00000011118	BMS1	55	63.459	Chlorocebus_sabaeus
ENSIPUG00000017855	bms1	93	72.460	ENSCHOG00000011055	BMS1	55	62.849	Choloepus_hoffmanni
ENSIPUG00000017855	bms1	99	61.003	ENSCPBG00000025581	BMS1	88	67.551	Chrysemys_picta_bellii
ENSIPUG00000017855	bms1	81	60.976	ENSCING00000003181	-	99	60.976	Ciona_intestinalis
ENSIPUG00000017855	bms1	71	54.353	ENSCSAVG00000004113	-	88	53.704	Ciona_savignyi
ENSIPUG00000017855	bms1	99	61.170	ENSCANG00000011609	BMS1	55	63.598	Colobus_angolensis_palliatus
ENSIPUG00000017855	bms1	99	61.239	ENSCGRG00001019461	Bms1	97	71.622	Cricetulus_griseus_chok1gshd
ENSIPUG00000017855	bms1	99	61.239	ENSCGRG00000009016	Bms1	96	71.622	Cricetulus_griseus_crigri
ENSIPUG00000017855	bms1	99	71.258	ENSCSEG00000002469	bms1	99	70.133	Cynoglossus_semilaevis
ENSIPUG00000017855	bms1	99	71.120	ENSCVAG00000008371	bms1	99	71.316	Cyprinodon_variegatus
ENSIPUG00000017855	bms1	100	75.810	ENSDARG00000054154	bms1	99	76.457	Danio_rerio
ENSIPUG00000017855	bms1	94	71.973	ENSDNOG00000015761	BMS1	89	66.511	Dasypus_novemcinctus
ENSIPUG00000017855	bms1	94	73.423	ENSDORG00000002982	Bms1	99	61.254	Dipodomys_ordii
ENSIPUG00000017855	bms1	84	58.690	FBgn0036686	CG7728	94	54.586	Drosophila_melanogaster
ENSIPUG00000017855	bms1	94	72.912	ENSEASG00005006894	BMS1	99	61.357	Equus_asinus_asinus
ENSIPUG00000017855	bms1	94	72.912	ENSECAG00000001358	BMS1	99	61.229	Equus_caballus
ENSIPUG00000017855	bms1	99	71.565	ENSELUG00000001756	bms1	99	70.268	Esox_lucius
ENSIPUG00000017855	bms1	59	59.580	ENSFCAG00000011220	BMS1	55	62.865	Felis_catus
ENSIPUG00000017855	bms1	94	73.214	ENSFALG00000006882	BMS1	89	67.121	Ficedula_albicollis
ENSIPUG00000017855	bms1	99	61.098	ENSFDAG00000001422	BMS1	50	66.256	Fukomys_damarensis
ENSIPUG00000017855	bms1	91	78.275	ENSFHEG00000003367	bms1	99	70.071	Fundulus_heteroclitus
ENSIPUG00000017855	bms1	99	65.339	ENSGMOG00000000718	bms1	89	78.818	Gadus_morhua
ENSIPUG00000017855	bms1	69	73.288	ENSGALG00000002624	BMS1	53	72.973	Gallus_gallus
ENSIPUG00000017855	bms1	100	67.070	ENSGACG00000015334	bms1	88	77.229	Gasterosteus_aculeatus
ENSIPUG00000017855	bms1	99	61.586	ENSGAGG00000003467	BMS1	99	62.382	Gopherus_agassizii
ENSIPUG00000017855	bms1	99	70.409	ENSHBUG00000022628	bms1	99	70.588	Haplochromis_burtoni
ENSIPUG00000017855	bms1	99	61.315	ENSHGLG00000000477	BMS1	99	62.853	Heterocephalus_glaber_female
ENSIPUG00000017855	bms1	99	61.391	ENSHGLG00100002176	BMS1	99	62.853	Heterocephalus_glaber_male
ENSIPUG00000017855	bms1	99	69.451	ENSHCOG00000017604	bms1	100	69.396	Hippocampus_comes
ENSIPUG00000017855	bms1	93	73.423	ENSSTOG00000015063	BMS1	50	65.899	Ictidomys_tridecemlineatus
ENSIPUG00000017855	bms1	94	72.936	ENSJJAG00000017328	Bms1	98	71.367	Jaculus_jaculus
ENSIPUG00000017855	bms1	67	63.626	ENSKMAG00000021982	bms1	97	61.865	Kryptolebias_marmoratus
ENSIPUG00000017855	bms1	84	79.167	ENSLBEG00000028208	bms1	99	69.298	Labrus_bergylta
ENSIPUG00000017855	bms1	66	73.594	ENSLACG00000001600	BMS1	69	73.594	Latimeria_chalumnae
ENSIPUG00000017855	bms1	98	72.110	ENSLOCG00000012914	bms1	99	71.597	Lepisosteus_oculatus
ENSIPUG00000017855	bms1	99	59.939	ENSLAFG00000006250	BMS1	50	65.697	Loxodonta_africana
ENSIPUG00000017855	bms1	86	64.378	ENSMFAG00000037771	BMS1	90	71.525	Macaca_fascicularis
ENSIPUG00000017855	bms1	79	55.972	ENSMLEG00000029084	-	59	60.385	Mandrillus_leucophaeus
ENSIPUG00000017855	bms1	99	70.294	ENSMAMG00000020855	bms1	99	69.133	Mastacembelus_armatus
ENSIPUG00000017855	bms1	99	70.730	ENSMZEG00005005663	bms1	97	82.303	Maylandia_zebra
ENSIPUG00000017855	bms1	90	72.907	ENSMGAG00000001170	BMS1	55	72.973	Meleagris_gallopavo
ENSIPUG00000017855	bms1	99	61.468	ENSMAUG00000002195	Bms1	97	71.622	Mesocricetus_auratus
ENSIPUG00000017855	bms1	99	60.168	ENSMOCG00000002038	Bms1	54	70.130	Microtus_ochrogaster
ENSIPUG00000017855	bms1	91	75.758	ENSMMOG00000000977	bms1	99	69.078	Mola_mola
ENSIPUG00000017855	bms1	93	73.303	ENSMODG00000001177	BMS1	96	73.303	Monodelphis_domestica
ENSIPUG00000017855	bms1	100	71.553	ENSMALG00000009680	bms1	99	71.168	Monopterus_albus
ENSIPUG00000017855	bms1	68	77.778	MGP_CAROLIEiJ_G0028785	-	84	74.020	Mus_caroli
ENSIPUG00000017855	bms1	99	61.128	ENSMUSG00000030138	Bms1	99	59.849	Mus_musculus
ENSIPUG00000017855	bms1	99	60.350	MGP_PahariEiJ_G0022539	Bms1	99	59.894	Mus_pahari
ENSIPUG00000017855	bms1	99	61.204	MGP_SPRETEiJ_G0029816	Bms1	59	71.493	Mus_spretus
ENSIPUG00000017855	bms1	99	60.030	ENSMPUG00000017276	BMS1	75	73.243	Mustela_putorius_furo
ENSIPUG00000017855	bms1	94	72.360	ENSMLUG00000003260	BMS1	97	72.297	Myotis_lucifugus
ENSIPUG00000017855	bms1	99	53.506	ENSNGAG00000015258	Bms1	94	60.081	Nannospalax_galili
ENSIPUG00000017855	bms1	99	59.802	ENSNLEG00000015791	BMS1	98	59.783	Nomascus_leucogenys
ENSIPUG00000017855	bms1	82	73.786	ENSOPRG00000005195	BMS1	80	73.966	Ochotona_princeps
ENSIPUG00000017855	bms1	99	61.128	ENSODEG00000005554	BMS1	97	72.398	Octodon_degus
ENSIPUG00000017855	bms1	99	71.065	ENSONIG00000007227	bms1	99	70.048	Oreochromis_niloticus
ENSIPUG00000017855	bms1	99	61.053	ENSOANG00000000662	-	51	65.821	Ornithorhynchus_anatinus
ENSIPUG00000017855	bms1	50	77.760	ENSORLG00000014655	bms1	99	70.672	Oryzias_latipes
ENSIPUG00000017855	bms1	50	77.033	ENSORLG00020016246	bms1	99	68.818	Oryzias_latipes_hni
ENSIPUG00000017855	bms1	77	83.696	ENSORLG00015014183	bms1	99	69.664	Oryzias_latipes_hsok
ENSIPUG00000017855	bms1	50	79.040	ENSOMEG00000015042	bms1	99	70.978	Oryzias_melastigma
ENSIPUG00000017855	bms1	99	60.576	ENSOGAG00000006511	BMS1	99	60.787	Otolemur_garnettii
ENSIPUG00000017855	bms1	94	73.589	ENSOARG00000003900	BMS1	99	61.876	Ovis_aries
ENSIPUG00000017855	bms1	99	57.859	ENSPPAG00000027837	BMS1	54	58.357	Pan_paniscus
ENSIPUG00000017855	bms1	99	61.077	ENSPPRG00000001311	BMS1	55	62.726	Panthera_pardus
ENSIPUG00000017855	bms1	59	57.849	ENSPTIG00000009652	BMS1	54	60.888	Panthera_tigris_altaica
ENSIPUG00000017855	bms1	99	60.866	ENSPTRG00000002441	BMS1	55	63.738	Pan_troglodytes
ENSIPUG00000017855	bms1	68	80.984	ENSPKIG00000008165	bms1	96	74.665	Paramormyrops_kingsleyae
ENSIPUG00000017855	bms1	94	72.360	ENSPSIG00000006481	BMS1	88	68.175	Pelodiscus_sinensis
ENSIPUG00000017855	bms1	94	72.146	ENSPEMG00000022467	Bms1	97	57.919	Peromyscus_maniculatus_bairdii
ENSIPUG00000017855	bms1	68	73.138	ENSPCIG00000001339	BMS1	99	60.279	Phascolarctos_cinereus
ENSIPUG00000017855	bms1	99	68.325	ENSPFOG00000015180	bms1	98	80.983	Poecilia_formosa
ENSIPUG00000017855	bms1	99	68.845	ENSPMEG00000023176	bms1	93	81.197	Poecilia_mexicana
ENSIPUG00000017855	bms1	50	76.000	ENSPREG00000002695	bms1	99	68.661	Poecilia_reticulata
ENSIPUG00000017855	bms1	76	72.789	ENSPCAG00000014528	BMS1	72	70.628	Procavia_capensis
ENSIPUG00000017855	bms1	51	64.006	ENSPCOG00000023834	-	87	70.172	Propithecus_coquereli
ENSIPUG00000017855	bms1	93	73.138	ENSPVAG00000000725	BMS1	98	72.138	Pteropus_vampyrus
ENSIPUG00000017855	bms1	99	69.745	ENSPNYG00000018866	bms1	99	69.285	Pundamilia_nyererei
ENSIPUG00000017855	bms1	99	79.111	ENSPNAG00000000676	bms1	99	79.735	Pygocentrus_nattereri
ENSIPUG00000017855	bms1	82	59.890	ENSRNOG00000006576	Bms1	97	77.512	Rattus_norvegicus
ENSIPUG00000017855	bms1	94	68.650	ENSRROG00000040101	BMS1	56	63.319	Rhinopithecus_roxellana
ENSIPUG00000017855	bms1	90	48.513	YPL217C	-	76	47.209	Saccharomyces_cerevisiae
ENSIPUG00000017855	bms1	99	60.837	ENSSBOG00000035778	BMS1	55	62.989	Saimiri_boliviensis_boliviensis
ENSIPUG00000017855	bms1	99	60.467	ENSSHAG00000005062	BMS1	84	73.423	Sarcophilus_harrisii
ENSIPUG00000017855	bms1	94	83.184	ENSSFOG00015022313	bms1	100	71.022	Scleropages_formosus
ENSIPUG00000017855	bms1	99	71.858	ENSSMAG00000019966	bms1	99	72.310	Scophthalmus_maximus
ENSIPUG00000017855	bms1	100	72.130	ENSSDUG00000016875	bms1	99	72.498	Seriola_dumerili
ENSIPUG00000017855	bms1	100	72.569	ENSSLDG00000015199	bms1	99	72.541	Seriola_lalandi_dorsalis
ENSIPUG00000017855	bms1	64	67.712	ENSSARG00000014407	BMS1	86	71.000	Sorex_araneus
ENSIPUG00000017855	bms1	100	60.631	ENSSPUG00000014454	BMS1	83	72.235	Sphenodon_punctatus
ENSIPUG00000017855	bms1	94	73.649	ENSSSCG00000010198	BMS1	99	62.187	Sus_scrofa
ENSIPUG00000017855	bms1	99	61.069	ENSTGUG00000006302	-	99	60.475	Taeniopygia_guttata
ENSIPUG00000017855	bms1	99	65.008	ENSTRUG00000008028	bms1	53	76.923	Takifugu_rubripes
ENSIPUG00000017855	bms1	97	70.080	ENSTNIG00000006216	bms1	83	75.682	Tetraodon_nigroviridis
ENSIPUG00000017855	bms1	57	80.473	ENSTBEG00000001673	-	59	80.838	Tupaia_belangeri
ENSIPUG00000017855	bms1	99	60.731	ENSTTRG00000007983	BMS1	95	75.000	Tursiops_truncatus
ENSIPUG00000017855	bms1	59	58.875	ENSUAMG00000023996	BMS1	97	73.016	Ursus_americanus
ENSIPUG00000017855	bms1	51	67.606	ENSUMAG00000016523	BMS1	97	72.562	Ursus_maritimus
ENSIPUG00000017855	bms1	52	74.492	ENSVPAG00000007477	BMS1	92	74.603	Vicugna_pacos
ENSIPUG00000017855	bms1	99	62.152	ENSVVUG00000021305	BMS1	96	71.076	Vulpes_vulpes
ENSIPUG00000017855	bms1	98	61.278	ENSXETG00000008158	bms1	97	75.676	Xenopus_tropicalis
ENSIPUG00000017855	bms1	94	77.350	ENSXCOG00000000506	bms1	99	81.410	Xiphophorus_couchianus
ENSIPUG00000017855	bms1	50	76.320	ENSXMAG00000014236	bms1	99	68.716	Xiphophorus_maculatus