EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000017956 (Gene tree)
Gene ID: 108259954
Gene Symbol: PRPF4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6443 bases
Position: chr28:14684480-14690922
Accession: 108259954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026536	PRP4	PF08799.11	5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027628	-	2359	XM_017459799	ENSIPUP00000026536	507 (aa)	XP_017315288	W5U8E0

Gene Model

Click here to download ENSIPUG00000017956's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000017956's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000017956	PRPF4	58	43.103	ENSIPUG00000014671	wdr61	98	30.894
ENSIPUG00000017956	PRPF4	62	33.103	ENSIPUG00000003568	TBL3	64	33.103
ENSIPUG00000017956	PRPF4	58	30.500	ENSIPUG00000001227	POC1A	76	30.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000017956	PRPF4	99	79.010	ENSG00000136875	PRPF4	97	79.010	Homo_sapiens
ENSIPUG00000017956	PRPF4	99	79.545	ENSAPOG00000014132	prpf4	99	79.545	Acanthochromis_polyacanthus
ENSIPUG00000017956	PRPF4	99	78.812	ENSAMEG00000013048	PRPF4	95	78.812	Ailuropoda_melanoleuca
ENSIPUG00000017956	PRPF4	100	79.412	ENSACIG00000005579	prpf4	100	79.412	Amphilophus_citrinellus
ENSIPUG00000017956	PRPF4	100	78.824	ENSAOCG00000005457	prpf4	100	78.824	Amphiprion_ocellaris
ENSIPUG00000017956	PRPF4	100	78.627	ENSAPEG00000000776	prpf4	100	78.627	Amphiprion_percula
ENSIPUG00000017956	PRPF4	100	79.216	ENSATEG00000023013	prpf4	100	79.216	Anabas_testudineus
ENSIPUG00000017956	PRPF4	99	78.812	ENSAPLG00000006534	PRPF4	94	78.812	Anas_platyrhynchos
ENSIPUG00000017956	PRPF4	99	78.937	ENSACAG00000015110	PRPF4	97	78.937	Anolis_carolinensis
ENSIPUG00000017956	PRPF4	99	78.812	ENSANAG00000022464	PRPF4	93	78.812	Aotus_nancymaae
ENSIPUG00000017956	PRPF4	100	78.431	ENSACLG00000019031	prpf4	100	78.431	Astatotilapia_calliptera
ENSIPUG00000017956	PRPF4	100	69.981	ENSAMXG00000006756	prpf4	100	83.037	Astyanax_mexicanus
ENSIPUG00000017956	PRPF4	99	78.812	ENSBTAG00000004571	PRPF4	97	78.812	Bos_taurus
ENSIPUG00000017956	PRPF4	89	45.695	WBGene00007972	prp-4	91	45.695	Caenorhabditis_elegans
ENSIPUG00000017956	PRPF4	99	78.812	ENSCJAG00000017856	PRPF4	97	78.812	Callithrix_jacchus
ENSIPUG00000017956	PRPF4	99	78.812	ENSCAFG00000003224	PRPF4	94	78.812	Canis_familiaris
ENSIPUG00000017956	PRPF4	99	78.812	ENSCAFG00020022637	PRPF4	97	78.812	Canis_lupus_dingo
ENSIPUG00000017956	PRPF4	99	78.614	ENSCHIG00000024648	-	97	78.614	Capra_hircus
ENSIPUG00000017956	PRPF4	99	78.614	ENSTSYG00000010366	PRPF4	97	78.614	Carlito_syrichta
ENSIPUG00000017956	PRPF4	82	71.122	ENSCAPG00000008935	PRPF4	97	71.122	Cavia_aperea
ENSIPUG00000017956	PRPF4	99	78.416	ENSCPOG00000010747	-	97	78.416	Cavia_porcellus
ENSIPUG00000017956	PRPF4	99	73.465	ENSCPOG00000014729	-	97	73.465	Cavia_porcellus
ENSIPUG00000017956	PRPF4	99	79.010	ENSCCAG00000028990	PRPF4	97	79.010	Cebus_capucinus
ENSIPUG00000017956	PRPF4	99	78.812	ENSCATG00000021552	PRPF4	97	78.812	Cercocebus_atys
ENSIPUG00000017956	PRPF4	99	78.812	ENSCLAG00000013448	PRPF4	97	78.812	Chinchilla_lanigera
ENSIPUG00000017956	PRPF4	89	78.982	ENSCHOG00000007233	PRPF4	100	78.982	Choloepus_hoffmanni
ENSIPUG00000017956	PRPF4	100	77.318	ENSCPBG00000019136	PRPF4	73	77.318	Chrysemys_picta_bellii
ENSIPUG00000017956	PRPF4	99	58.465	ENSCING00000001299	-	97	58.465	Ciona_intestinalis
ENSIPUG00000017956	PRPF4	99	58.185	ENSCSAVG00000009178	-	99	59.698	Ciona_savignyi
ENSIPUG00000017956	PRPF4	99	78.812	ENSCANG00000003246	PRPF4	97	78.812	Colobus_angolensis_palliatus
ENSIPUG00000017956	PRPF4	99	79.010	ENSCGRG00001016992	Prpf4	97	79.010	Cricetulus_griseus_chok1gshd
ENSIPUG00000017956	PRPF4	99	79.010	ENSCGRG00000017560	Prpf4	97	79.010	Cricetulus_griseus_crigri
ENSIPUG00000017956	PRPF4	99	80.000	ENSCSEG00000020451	prpf4	99	80.000	Cynoglossus_semilaevis
ENSIPUG00000017956	PRPF4	100	87.179	ENSDARG00000067639	prpf4	100	87.179	Danio_rerio
ENSIPUG00000017956	PRPF4	99	78.812	ENSDNOG00000013203	PRPF4	97	78.812	Dasypus_novemcinctus
ENSIPUG00000017956	PRPF4	99	78.416	ENSDORG00000026275	Prpf4	97	78.416	Dipodomys_ordii
ENSIPUG00000017956	PRPF4	100	50.452	FBgn0036733	U4-U6-60K	99	50.814	Drosophila_melanogaster
ENSIPUG00000017956	PRPF4	99	79.010	ENSETEG00000020389	PRPF4	97	79.010	Echinops_telfairi
ENSIPUG00000017956	PRPF4	99	67.117	ENSEBUG00000015229	prpf4	88	68.018	Eptatretus_burgeri
ENSIPUG00000017956	PRPF4	99	78.812	ENSEASG00005022678	PRPF4	97	78.812	Equus_asinus_asinus
ENSIPUG00000017956	PRPF4	99	78.812	ENSECAG00000007072	PRPF4	97	78.812	Equus_caballus
ENSIPUG00000017956	PRPF4	99	62.585	ENSEEUG00000007480	PRPF4	96	62.585	Erinaceus_europaeus
ENSIPUG00000017956	PRPF4	100	87.771	ENSELUG00000007510	prpf4	100	87.771	Esox_lucius
ENSIPUG00000017956	PRPF4	99	78.812	ENSFCAG00000005514	PRPF4	97	78.812	Felis_catus
ENSIPUG00000017956	PRPF4	99	76.923	ENSFALG00000005423	PRPF4	85	76.923	Ficedula_albicollis
ENSIPUG00000017956	PRPF4	99	79.010	ENSFDAG00000005839	PRPF4	97	79.010	Fukomys_damarensis
ENSIPUG00000017956	PRPF4	100	78.516	ENSFHEG00000001300	prpf4	100	78.516	Fundulus_heteroclitus
ENSIPUG00000017956	PRPF4	99	79.249	ENSGALG00000008857	PRPF4	94	79.249	Gallus_gallus
ENSIPUG00000017956	PRPF4	94	74.468	ENSGAFG00000012164	prpf4	69	74.468	Gambusia_affinis
ENSIPUG00000017956	PRPF4	100	71.373	ENSGACG00000015476	prpf4	100	70.980	Gasterosteus_aculeatus
ENSIPUG00000017956	PRPF4	100	77.515	ENSGAGG00000025029	PRPF4	94	77.515	Gopherus_agassizii
ENSIPUG00000017956	PRPF4	99	79.010	ENSGGOG00000006943	PRPF4	97	79.010	Gorilla_gorilla
ENSIPUG00000017956	PRPF4	100	78.431	ENSHBUG00000000562	prpf4	100	78.468	Haplochromis_burtoni
ENSIPUG00000017956	PRPF4	96	67.351	ENSHGLG00000016628	-	95	67.967	Heterocephalus_glaber_female
ENSIPUG00000017956	PRPF4	99	63.762	ENSHGLG00000003838	-	97	63.762	Heterocephalus_glaber_female
ENSIPUG00000017956	PRPF4	99	79.208	ENSHGLG00000015191	PRPF4	97	79.208	Heterocephalus_glaber_female
ENSIPUG00000017956	PRPF4	99	63.762	ENSHGLG00100005571	-	97	63.762	Heterocephalus_glaber_male
ENSIPUG00000017956	PRPF4	99	78.614	ENSSTOG00000027833	PRPF4	97	78.614	Ictidomys_tridecemlineatus
ENSIPUG00000017956	PRPF4	99	78.614	ENSJJAG00000008838	Prpf4	97	78.614	Jaculus_jaculus
ENSIPUG00000017956	PRPF4	100	78.235	ENSKMAG00000013236	prpf4	100	78.235	Kryptolebias_marmoratus
ENSIPUG00000017956	PRPF4	100	78.543	ENSLBEG00000020611	prpf4	100	78.543	Labrus_bergylta
ENSIPUG00000017956	PRPF4	100	75.835	ENSLACG00000016317	PRPF4	97	75.835	Latimeria_chalumnae
ENSIPUG00000017956	PRPF4	100	85.207	ENSLOCG00000000581	prpf4	100	85.207	Lepisosteus_oculatus
ENSIPUG00000017956	PRPF4	99	78.812	ENSLAFG00000018225	PRPF4	97	78.812	Loxodonta_africana
ENSIPUG00000017956	PRPF4	99	78.614	ENSMFAG00000039397	PRPF4	97	78.614	Macaca_fascicularis
ENSIPUG00000017956	PRPF4	99	78.812	ENSMMUG00000005844	PRPF4	97	78.812	Macaca_mulatta
ENSIPUG00000017956	PRPF4	99	71.089	ENSMNEG00000033737	PRPF4	97	71.089	Macaca_nemestrina
ENSIPUG00000017956	PRPF4	99	78.812	ENSMLEG00000040284	PRPF4	97	78.812	Mandrillus_leucophaeus
ENSIPUG00000017956	PRPF4	99	79.724	ENSMAMG00000020141	prpf4	99	79.487	Mastacembelus_armatus
ENSIPUG00000017956	PRPF4	100	78.431	ENSMZEG00005023205	prpf4	100	78.431	Maylandia_zebra
ENSIPUG00000017956	PRPF4	99	78.854	ENSMGAG00000001796	PRPF4	94	78.854	Meleagris_gallopavo
ENSIPUG00000017956	PRPF4	99	79.010	ENSMAUG00000018022	Prpf4	97	79.010	Mesocricetus_auratus
ENSIPUG00000017956	PRPF4	99	79.406	ENSMICG00000015022	PRPF4	97	79.406	Microcebus_murinus
ENSIPUG00000017956	PRPF4	99	78.614	ENSMOCG00000018273	Prpf4	97	78.614	Microtus_ochrogaster
ENSIPUG00000017956	PRPF4	99	79.406	ENSMMOG00000021177	prpf4	99	79.406	Mola_mola
ENSIPUG00000017956	PRPF4	99	77.822	ENSMODG00000004444	-	97	78.416	Monodelphis_domestica
ENSIPUG00000017956	PRPF4	99	77.822	ENSMODG00000025096	-	94	78.416	Monodelphis_domestica
ENSIPUG00000017956	PRPF4	100	79.216	ENSMALG00000013624	prpf4	100	79.216	Monopterus_albus
ENSIPUG00000017956	PRPF4	99	79.010	MGP_CAROLIEiJ_G0026078	Prpf4	97	79.010	Mus_caroli
ENSIPUG00000017956	PRPF4	99	79.010	ENSMUSG00000066148	Prpf4	97	79.010	Mus_musculus
ENSIPUG00000017956	PRPF4	99	79.010	MGP_PahariEiJ_G0028413	Prpf4	97	79.010	Mus_pahari
ENSIPUG00000017956	PRPF4	99	79.010	MGP_SPRETEiJ_G0027042	Prpf4	97	79.010	Mus_spretus
ENSIPUG00000017956	PRPF4	99	78.812	ENSMPUG00000007883	PRPF4	97	78.812	Mustela_putorius_furo
ENSIPUG00000017956	PRPF4	99	78.416	ENSMLUG00000008626	-	94	78.416	Myotis_lucifugus
ENSIPUG00000017956	PRPF4	99	79.208	ENSMLUG00000015309	-	94	79.208	Myotis_lucifugus
ENSIPUG00000017956	PRPF4	99	73.465	ENSNGAG00000000468	Prpf4	97	73.465	Nannospalax_galili
ENSIPUG00000017956	PRPF4	100	78.431	ENSNBRG00000007972	prpf4	100	78.431	Neolamprologus_brichardi
ENSIPUG00000017956	PRPF4	99	78.812	ENSNLEG00000016647	PRPF4	97	78.812	Nomascus_leucogenys
ENSIPUG00000017956	PRPF4	99	77.822	ENSMEUG00000013256	PRPF4	98	78.416	Notamacropus_eugenii
ENSIPUG00000017956	PRPF4	99	78.614	ENSOPRG00000005302	PRPF4	97	78.614	Ochotona_princeps
ENSIPUG00000017956	PRPF4	99	78.812	ENSODEG00000018147	PRPF4	97	78.812	Octodon_degus
ENSIPUG00000017956	PRPF4	100	78.627	ENSONIG00000012671	prpf4	100	78.627	Oreochromis_niloticus
ENSIPUG00000017956	PRPF4	99	78.614	ENSOCUG00000005046	PRPF4	97	78.614	Oryctolagus_cuniculus
ENSIPUG00000017956	PRPF4	100	77.362	ENSORLG00000019641	prpf4	100	77.362	Oryzias_latipes
ENSIPUG00000017956	PRPF4	100	77.362	ENSORLG00020019438	prpf4	100	77.362	Oryzias_latipes_hni
ENSIPUG00000017956	PRPF4	100	76.575	ENSOMEG00000020941	prpf4	100	77.547	Oryzias_melastigma
ENSIPUG00000017956	PRPF4	99	74.851	ENSOGAG00000007802	PRPF4	95	74.851	Otolemur_garnettii
ENSIPUG00000017956	PRPF4	99	78.614	ENSOARG00000006319	PRPF4	94	78.614	Ovis_aries
ENSIPUG00000017956	PRPF4	99	79.010	ENSPPAG00000041797	PRPF4	97	79.010	Pan_paniscus
ENSIPUG00000017956	PRPF4	99	78.812	ENSPPRG00000014360	PRPF4	97	78.812	Panthera_pardus
ENSIPUG00000017956	PRPF4	99	78.812	ENSPTIG00000009574	PRPF4	97	78.812	Panthera_tigris_altaica
ENSIPUG00000017956	PRPF4	99	79.010	ENSPTRG00000021274	PRPF4	97	79.010	Pan_troglodytes
ENSIPUG00000017956	PRPF4	99	78.614	ENSPANG00000025776	PRPF4	93	78.614	Papio_anubis
ENSIPUG00000017956	PRPF4	100	87.377	ENSPKIG00000017259	prpf4	100	87.377	Paramormyrops_kingsleyae
ENSIPUG00000017956	PRPF4	100	77.120	ENSPSIG00000010713	PRPF4	89	77.120	Pelodiscus_sinensis
ENSIPUG00000017956	PRPF4	100	58.101	ENSPMGG00000000997	prpf4	98	59.218	Periophthalmus_magnuspinnatus
ENSIPUG00000017956	PRPF4	99	79.010	ENSPEMG00000024115	Prpf4	97	79.010	Peromyscus_maniculatus_bairdii
ENSIPUG00000017956	PRPF4	99	78.614	ENSPCIG00000003821	PRPF4	98	78.614	Phascolarctos_cinereus
ENSIPUG00000017956	PRPF4	100	71.790	ENSPFOG00000013524	prpf4	99	73.860	Poecilia_formosa
ENSIPUG00000017956	PRPF4	93	72.671	ENSPLAG00000011620	prpf4	99	70.517	Poecilia_latipinna
ENSIPUG00000017956	PRPF4	98	74.631	ENSPMEG00000006813	prpf4	100	74.631	Poecilia_mexicana
ENSIPUG00000017956	PRPF4	99	78.812	ENSPCAG00000002561	PRPF4	98	78.812	Procavia_capensis
ENSIPUG00000017956	PRPF4	99	79.010	ENSPCOG00000011975	PRPF4	97	79.010	Propithecus_coquereli
ENSIPUG00000017956	PRPF4	99	76.040	ENSPVAG00000004708	PRPF4	97	76.040	Pteropus_vampyrus
ENSIPUG00000017956	PRPF4	100	78.627	ENSPNYG00000008013	prpf4	100	78.627	Pundamilia_nyererei
ENSIPUG00000017956	PRPF4	100	89.152	ENSPNAG00000000697	prpf4	100	89.152	Pygocentrus_nattereri
ENSIPUG00000017956	PRPF4	99	78.812	ENSRNOG00000014777	Prpf4	97	78.812	Rattus_norvegicus
ENSIPUG00000017956	PRPF4	99	78.812	ENSRBIG00000040221	PRPF4	97	78.812	Rhinopithecus_bieti
ENSIPUG00000017956	PRPF4	99	78.812	ENSRROG00000040240	PRPF4	97	78.812	Rhinopithecus_roxellana
ENSIPUG00000017956	PRPF4	99	78.020	ENSSHAG00000017658	PRPF4	97	78.614	Sarcophilus_harrisii
ENSIPUG00000017956	PRPF4	100	87.771	ENSSFOG00015008963	prpf4	100	87.771	Scleropages_formosus
ENSIPUG00000017956	PRPF4	100	79.216	ENSSMAG00000008889	prpf4	100	79.216	Scophthalmus_maximus
ENSIPUG00000017956	PRPF4	99	79.503	ENSSDUG00000022083	prpf4	94	79.710	Seriola_dumerili
ENSIPUG00000017956	PRPF4	99	79.917	ENSSLDG00000008115	prpf4	94	80.124	Seriola_lalandi_dorsalis
ENSIPUG00000017956	PRPF4	99	79.249	ENSSPUG00000015582	PRPF4	97	79.249	Sphenodon_punctatus
ENSIPUG00000017956	PRPF4	100	72.904	ENSSPAG00000011286	prpf4	100	72.904	Stegastes_partitus
ENSIPUG00000017956	PRPF4	99	78.812	ENSSSCG00000024648	PRPF4	97	78.812	Sus_scrofa
ENSIPUG00000017956	PRPF4	98	78.990	ENSTGUG00000002623	PRPF4	100	79.141	Taeniopygia_guttata
ENSIPUG00000017956	PRPF4	99	80.040	ENSTRUG00000008853	prpf4	99	80.040	Takifugu_rubripes
ENSIPUG00000017956	PRPF4	99	78.812	ENSTNIG00000013250	prpf4	99	78.812	Tetraodon_nigroviridis
ENSIPUG00000017956	PRPF4	99	72.277	ENSTBEG00000000821	PRPF4	97	72.277	Tupaia_belangeri
ENSIPUG00000017956	PRPF4	89	82.558	ENSTTRG00000003246	PRPF4	85	82.558	Tursiops_truncatus
ENSIPUG00000017956	PRPF4	70	69.014	ENSUAMG00000018288	PRPF4	96	69.014	Ursus_americanus
ENSIPUG00000017956	PRPF4	99	78.218	ENSUMAG00000019375	PRPF4	97	78.218	Ursus_maritimus
ENSIPUG00000017956	PRPF4	99	78.812	ENSVPAG00000005281	PRPF4	97	78.812	Vicugna_pacos
ENSIPUG00000017956	PRPF4	99	78.416	ENSVVUG00000002476	PRPF4	99	78.416	Vulpes_vulpes
ENSIPUG00000017956	PRPF4	71	56.825	ENSXCOG00000006101	prpf4	93	60.149	Xiphophorus_couchianus
ENSIPUG00000017956	PRPF4	91	64.871	ENSXMAG00000002750	prpf4	99	66.798	Xiphophorus_maculatus