EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000018040 (Gene tree)
Gene ID: 108268299
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: zinc finger protein 36%2C C3H1 type-like 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 2080 bases
Position: chr7:11744119-11746198
Accession: 108268299
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026624	zf-CCCH	PF00642.24	1e-32	1	4
ENSIPUP00000026624	zf-CCCH	PF00642.24	1e-32	2	4
ENSIPUP00000026624	zf-CCCH	PF00642.24	1e-32	3	4
ENSIPUP00000026624	zf-CCCH	PF00642.24	1e-32	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027721	-	1521	XM_017473178	ENSIPUP00000026624	318 (aa)	XP_017328667	A0A2D0RDP9

Gene Model

Click here to download ENSIPUG00000018040's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018040	cth1	90	55.479	ENSAPOG00000012552	cth1	98	56.863	Acanthochromis_polyacanthus
ENSIPUG00000018040	cth1	85	60.573	ENSACIG00000016026	cth1	96	55.692	Amphilophus_citrinellus
ENSIPUG00000018040	cth1	90	56.187	ENSAOCG00000001644	cth1	99	57.012	Amphiprion_ocellaris
ENSIPUG00000018040	cth1	90	56.187	ENSAPEG00000008930	cth1	99	57.012	Amphiprion_percula
ENSIPUG00000018040	cth1	90	58.224	ENSATEG00000002281	cth1	94	58.951	Anabas_testudineus
ENSIPUG00000018040	cth1	66	66.055	ENSACLG00000015353	cth1	100	57.516	Astatotilapia_calliptera
ENSIPUG00000018040	cth1	96	82.792	ENSAMXG00000025717	cth1	98	84.740	Astyanax_mexicanus
ENSIPUG00000018040	cth1	90	55.738	ENSCSEG00000014617	cth1	97	57.895	Cynoglossus_semilaevis
ENSIPUG00000018040	cth1	90	51.916	ENSCVAG00000001680	cth1	61	51.475	Cyprinodon_variegatus
ENSIPUG00000018040	cth1	99	75.389	ENSDARG00000057328	cth1	100	74.766	Danio_rerio
ENSIPUG00000018040	cth1	97	66.254	ENSELUG00000012738	cth1	96	66.254	Esox_lucius
ENSIPUG00000018040	cth1	90	53.177	ENSFHEG00000022665	cth1	97	52.351	Fundulus_heteroclitus
ENSIPUG00000018040	cth1	89	55.782	ENSGMOG00000007360	cth1	96	56.013	Gadus_morhua
ENSIPUG00000018040	cth1	95	52.830	ENSGAFG00000019288	cth1	96	54.286	Gambusia_affinis
ENSIPUG00000018040	cth1	95	56.151	ENSGACG00000000802	cth1	96	56.151	Gasterosteus_aculeatus
ENSIPUG00000018040	cth1	98	56.386	ENSHBUG00000014400	cth1	99	56.656	Haplochromis_burtoni
ENSIPUG00000018040	cth1	98	49.842	ENSHCOG00000010276	cth1	99	49.842	Hippocampus_comes
ENSIPUG00000018040	cth1	90	52.525	ENSKMAG00000005944	cth1	96	53.333	Kryptolebias_marmoratus
ENSIPUG00000018040	cth1	90	61.333	ENSLBEG00000019253	cth1	97	61.006	Labrus_bergylta
ENSIPUG00000018040	cth1	64	59.223	ENSLOCG00000002047	cth1	100	59.223	Lepisosteus_oculatus
ENSIPUG00000018040	cth1	65	61.086	ENSMAMG00000001525	cth1	97	47.922	Mastacembelus_armatus
ENSIPUG00000018040	cth1	95	57.605	ENSMZEG00005022335	cth1	96	57.878	Maylandia_zebra
ENSIPUG00000018040	cth1	84	55.396	ENSMMOG00000020518	cth1	96	54.934	Mola_mola
ENSIPUG00000018040	cth1	95	47.467	ENSMALG00000020738	cth1	60	60.262	Monopterus_albus
ENSIPUG00000018040	cth1	92	56.122	ENSNBRG00000022789	cth1	86	56.643	Neolamprologus_brichardi
ENSIPUG00000018040	cth1	67	66.520	ENSONIG00000021318	cth1	95	56.962	Oreochromis_niloticus
ENSIPUG00000018040	cth1	92	55.150	ENSORLG00000022847	cth1	91	55.482	Oryzias_latipes
ENSIPUG00000018040	cth1	92	55.150	ENSORLG00020011979	cth1	91	56.478	Oryzias_latipes_hni
ENSIPUG00000018040	cth1	95	54.019	ENSORLG00015013084	cth1	100	53.354	Oryzias_latipes_hsok
ENSIPUG00000018040	cth1	96	52.273	ENSOMEG00000005809	cth1	82	54.221	Oryzias_melastigma
ENSIPUG00000018040	cth1	95	63.259	ENSPKIG00000015883	cth1	95	62.300	Paramormyrops_kingsleyae
ENSIPUG00000018040	cth1	89	57.426	ENSPMGG00000004275	cth1	96	56.707	Periophthalmus_magnuspinnatus
ENSIPUG00000018040	cth1	95	55.016	ENSPFOG00000013583	cth1	91	53.698	Poecilia_formosa
ENSIPUG00000018040	cth1	95	54.693	ENSPLAG00000018158	cth1	91	53.376	Poecilia_latipinna
ENSIPUG00000018040	cth1	95	54.839	ENSPMEG00000005744	cth1	96	53.871	Poecilia_mexicana
ENSIPUG00000018040	cth1	94	55.333	ENSPREG00000004099	cth1	93	54.305	Poecilia_reticulata
ENSIPUG00000018040	cth1	86	58.242	ENSPNYG00000016705	cth1	87	58.759	Pundamilia_nyererei
ENSIPUG00000018040	cth1	99	83.386	ENSPNAG00000013147	cth1	99	83.386	Pygocentrus_nattereri
ENSIPUG00000018040	cth1	93	58.333	ENSSFOG00015017190	cth1	93	58.416	Scleropages_formosus
ENSIPUG00000018040	cth1	90	57.237	ENSSMAG00000007977	cth1	97	58.282	Scophthalmus_maximus
ENSIPUG00000018040	cth1	90	58.117	ENSSDUG00000004321	cth1	97	59.509	Seriola_dumerili
ENSIPUG00000018040	cth1	90	57.929	ENSSLDG00000012760	cth1	97	59.939	Seriola_lalandi_dorsalis
ENSIPUG00000018040	cth1	90	57.051	ENSSLDG00000010023	-	97	59.327	Seriola_lalandi_dorsalis
ENSIPUG00000018040	cth1	90	57.051	ENSSLDG00000004516	-	97	59.327	Seriola_lalandi_dorsalis
ENSIPUG00000018040	cth1	90	55.298	ENSSPAG00000018659	cth1	97	56.386	Stegastes_partitus
ENSIPUG00000018040	cth1	96	55.312	ENSTRUG00000012770	cth1	97	55.937	Takifugu_rubripes
ENSIPUG00000018040	cth1	95	53.651	ENSTNIG00000000740	cth1	97	53.943	Tetraodon_nigroviridis
ENSIPUG00000018040	cth1	84	53.731	ENSXCOG00000003710	cth1	90	53.532	Xiphophorus_couchianus
ENSIPUG00000018040	cth1	95	52.848	ENSXMAG00000023885	cth1	96	52.201	Xiphophorus_maculatus