EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000018044 (Gene tree)
Gene ID: 100528803
Gene Symbol: rnaseh2c
Alias: rnh2c
Full Name: ribonuclease H2 subunit C
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 7494 bases
Position: chr8:6037831-6045324
Accession: 100528803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026672	RNase_H2_suC	PF08615.11	1.2e-18	1	1
ENSIPUP00000026676	RNase_H2_suC	PF08615.11	2.9e-18	1	1
ENSIPUP00000026649	RNase_H2_suC	PF08615.11	5.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027773	-	471	-	ENSIPUP00000026676	156 (aa)	-	-
ENSIPUT00000027746	-	774	-	ENSIPUP00000026649	191 (aa)	-	-
ENSIPUT00000027769	-	655	XM_017473306	ENSIPUP00000026672	136 (aa)	XP_017328795	A0A2D0RFX2

Gene Model

Click here to download ENSIPUG00000018044's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018044's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSAPOG00000012901	rnaseh2c	99	64.706	Acanthochromis_polyacanthus
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSACIG00000022433	rnaseh2c	100	63.235	Amphilophus_citrinellus
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSAOCG00000016855	rnaseh2c	100	64.706	Amphiprion_ocellaris
ENSIPUG00000018044	rnaseh2c	100	65.441	ENSAPEG00000009850	rnaseh2c	100	65.441	Amphiprion_percula
ENSIPUG00000018044	rnaseh2c	100	66.912	ENSATEG00000014395	rnaseh2c	100	66.912	Anabas_testudineus
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSACLG00000016950	rnaseh2c	100	63.235	Astatotilapia_calliptera
ENSIPUG00000018044	rnaseh2c	99	75.556	ENSAMXG00000001210	rnaseh2c	100	75.556	Astyanax_mexicanus
ENSIPUG00000018044	rnaseh2c	99	49.254	ENSCPBG00000023408	-	96	49.254	Chrysemys_picta_bellii
ENSIPUG00000018044	rnaseh2c	100	65.441	ENSCSEG00000005808	rnaseh2c	99	65.441	Cynoglossus_semilaevis
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSCVAG00000006337	rnaseh2c	100	64.706	Cyprinodon_variegatus
ENSIPUG00000018044	rnaseh2c	100	72.794	ENSDARG00000089637	rnaseh2c	99	72.794	Danio_rerio
ENSIPUG00000018044	rnaseh2c	81	46.429	ENSEBUG00000014939	rnaseh2c	77	44.186	Eptatretus_burgeri
ENSIPUG00000018044	rnaseh2c	98	68.421	ENSELUG00000007345	rnaseh2c	97	68.421	Esox_lucius
ENSIPUG00000018044	rnaseh2c	94	65.625	ENSFHEG00000002419	rnaseh2c	98	64.179	Fundulus_heteroclitus
ENSIPUG00000018044	rnaseh2c	65	60.674	ENSGMOG00000008727	rnaseh2c	99	60.674	Gadus_morhua
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSGAFG00000016755	rnaseh2c	83	63.235	Gambusia_affinis
ENSIPUG00000018044	rnaseh2c	99	50.562	ENSGAGG00000008193	-	96	48.507	Gopherus_agassizii
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSHBUG00000012806	rnaseh2c	100	64.706	Haplochromis_burtoni
ENSIPUG00000018044	rnaseh2c	100	61.029	ENSHCOG00000007177	rnaseh2c	100	61.029	Hippocampus_comes
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSKMAG00000004184	rnaseh2c	100	64.706	Kryptolebias_marmoratus
ENSIPUG00000018044	rnaseh2c	100	63.504	ENSLBEG00000005742	rnaseh2c	100	63.504	Labrus_bergylta
ENSIPUG00000018044	rnaseh2c	95	57.364	ENSLACG00000010120	-	93	56.818	Latimeria_chalumnae
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSMAMG00000021610	rnaseh2c	100	64.706	Mastacembelus_armatus
ENSIPUG00000018044	rnaseh2c	100	63.971	ENSMZEG00005004796	rnaseh2c	100	63.971	Maylandia_zebra
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSMMOG00000002869	rnaseh2c	100	64.062	Mola_mola
ENSIPUG00000018044	rnaseh2c	100	65.693	ENSMALG00000012198	rnaseh2c	100	65.693	Monopterus_albus
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSNBRG00000001462	rnaseh2c	100	64.706	Neolamprologus_brichardi
ENSIPUG00000018044	rnaseh2c	100	63.971	ENSONIG00000005338	rnaseh2c	99	63.971	Oreochromis_niloticus
ENSIPUG00000018044	rnaseh2c	100	58.824	ENSORLG00000023473	rnaseh2c	100	58.824	Oryzias_latipes
ENSIPUG00000018044	rnaseh2c	100	58.088	ENSORLG00020019053	rnaseh2c	91	58.088	Oryzias_latipes_hni
ENSIPUG00000018044	rnaseh2c	100	59.559	ENSORLG00015017067	rnaseh2c	91	59.559	Oryzias_latipes_hsok
ENSIPUG00000018044	rnaseh2c	100	59.559	ENSOMEG00000018607	rnaseh2c	100	59.559	Oryzias_melastigma
ENSIPUG00000018044	rnaseh2c	100	60.294	ENSPKIG00000019331	rnaseh2c	100	60.294	Paramormyrops_kingsleyae
ENSIPUG00000018044	rnaseh2c	100	62.500	ENSPFOG00000009415	rnaseh2c	100	62.500	Poecilia_formosa
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSPLAG00000023330	rnaseh2c	100	63.235	Poecilia_latipinna
ENSIPUG00000018044	rnaseh2c	100	62.500	ENSPMEG00000003696	rnaseh2c	100	62.500	Poecilia_mexicana
ENSIPUG00000018044	rnaseh2c	100	58.503	ENSPREG00000015384	rnaseh2c	73	58.503	Poecilia_reticulata
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSPNYG00000014766	rnaseh2c	100	64.706	Pundamilia_nyererei
ENSIPUG00000018044	rnaseh2c	99	78.519	ENSPNAG00000019111	rnaseh2c	99	78.519	Pygocentrus_nattereri
ENSIPUG00000018044	rnaseh2c	99	63.704	ENSSFOG00015005760	rnaseh2c	99	65.152	Scleropages_formosus
ENSIPUG00000018044	rnaseh2c	100	65.441	ENSSMAG00000017738	rnaseh2c	100	65.441	Scophthalmus_maximus
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSSDUG00000017285	rnaseh2c	100	64.706	Seriola_dumerili
ENSIPUG00000018044	rnaseh2c	100	66.176	ENSSLDG00000016030	rnaseh2c	100	66.176	Seriola_lalandi_dorsalis
ENSIPUG00000018044	rnaseh2c	93	51.538	ENSSPUG00000000842	-	86	51.538	Sphenodon_punctatus
ENSIPUG00000018044	rnaseh2c	100	63.235	ENSSPAG00000007536	rnaseh2c	100	63.235	Stegastes_partitus
ENSIPUG00000018044	rnaseh2c	100	58.824	ENSTRUG00000021845	rnaseh2c	100	58.824	Takifugu_rubripes
ENSIPUG00000018044	rnaseh2c	100	62.500	ENSTNIG00000000431	rnaseh2c	100	62.500	Tetraodon_nigroviridis
ENSIPUG00000018044	rnaseh2c	97	55.303	ENSXETG00000032466	-	96	55.303	Xenopus_tropicalis
ENSIPUG00000018044	rnaseh2c	96	66.154	ENSXCOG00000001611	rnaseh2c	96	66.154	Xiphophorus_couchianus
ENSIPUG00000018044	rnaseh2c	100	64.706	ENSXMAG00000003147	rnaseh2c	83	64.706	Xiphophorus_maculatus