EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000018054 (Gene tree)
Gene ID: 108259958
Gene Symbol: RCL1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 15517 bases
Position: chr28:14715899-14731415
Accession: 108259958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000026689	RTC	PF01137.21	4e-59	1	1
ENSIPUP00000026722	RTC	PF01137.21	3.4e-47	1	1
ENSIPUP00000026689	RTC_insert	PF05189.13	8.7e-36	1	1
ENSIPUP00000026722	RTC_insert	PF05189.13	9.3e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000027786	-	5159	XM_017459806	ENSIPUP00000026689	370 (aa)	XP_017315295	W5UA86
ENSIPUT00000027821	-	5055	-	ENSIPUP00000026722	372 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000018054's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018054's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018054	RCL1	99	79.891	ENSG00000120158	RCL1	100	81.019	Homo_sapiens
ENSIPUG00000018054	RCL1	100	84.140	ENSAPOG00000015666	rcl1	100	84.140	Acanthochromis_polyacanthus
ENSIPUG00000018054	RCL1	99	80.707	ENSAMEG00000002631	RCL1	98	80.707	Ailuropoda_melanoleuca
ENSIPUG00000018054	RCL1	100	83.333	ENSACIG00000021195	rcl1	100	83.333	Amphilophus_citrinellus
ENSIPUG00000018054	RCL1	100	82.527	ENSAOCG00000002223	rcl1	100	82.527	Amphiprion_ocellaris
ENSIPUG00000018054	RCL1	100	83.333	ENSAPEG00000006905	rcl1	100	83.333	Amphiprion_percula
ENSIPUG00000018054	RCL1	100	80.645	ENSATEG00000020026	rcl1	100	80.645	Anabas_testudineus
ENSIPUG00000018054	RCL1	89	76.596	ENSAPLG00000006031	RCL1	100	76.596	Anas_platyrhynchos
ENSIPUG00000018054	RCL1	99	74.457	ENSACAG00000003640	RCL1	98	74.457	Anolis_carolinensis
ENSIPUG00000018054	RCL1	99	79.620	ENSANAG00000037372	RCL1	98	79.620	Aotus_nancymaae
ENSIPUG00000018054	RCL1	100	82.796	ENSACLG00000021724	rcl1	100	82.796	Astatotilapia_calliptera
ENSIPUG00000018054	RCL1	100	88.108	ENSAMXG00000033394	rcl1	100	88.108	Astyanax_mexicanus
ENSIPUG00000018054	RCL1	99	44.385	WBGene00022852	ZK1127.5	99	44.385	Caenorhabditis_elegans
ENSIPUG00000018054	RCL1	99	80.163	ENSCJAG00000011202	RCL1	98	80.163	Callithrix_jacchus
ENSIPUG00000018054	RCL1	99	80.707	ENSCAFG00000002091	RCL1	98	80.707	Canis_familiaris
ENSIPUG00000018054	RCL1	99	80.707	ENSCAFG00020000638	RCL1	77	80.707	Canis_lupus_dingo
ENSIPUG00000018054	RCL1	99	79.620	ENSCHIG00000012407	RCL1	98	79.620	Capra_hircus
ENSIPUG00000018054	RCL1	89	79.573	ENSTSYG00000009592	RCL1	97	80.769	Carlito_syrichta
ENSIPUG00000018054	RCL1	69	65.318	ENSCAPG00000013575	RCL1	100	65.318	Cavia_aperea
ENSIPUG00000018054	RCL1	99	79.620	ENSCPOG00000015354	RCL1	98	79.620	Cavia_porcellus
ENSIPUG00000018054	RCL1	99	79.891	ENSCCAG00000033505	RCL1	98	79.891	Cebus_capucinus
ENSIPUG00000018054	RCL1	99	79.620	ENSCATG00000034721	RCL1	98	79.620	Cercocebus_atys
ENSIPUG00000018054	RCL1	99	79.620	ENSCLAG00000007445	RCL1	98	79.620	Chinchilla_lanigera
ENSIPUG00000018054	RCL1	99	79.620	ENSCSAG00000008811	RCL1	98	79.620	Chlorocebus_sabaeus
ENSIPUG00000018054	RCL1	86	70.032	ENSCHOG00000007216	RCL1	98	70.032	Choloepus_hoffmanni
ENSIPUG00000018054	RCL1	99	77.717	ENSCPBG00000025481	RCL1	94	77.576	Chrysemys_picta_bellii
ENSIPUG00000018054	RCL1	100	58.445	ENSCING00000019565	-	99	58.445	Ciona_intestinalis
ENSIPUG00000018054	RCL1	99	79.891	ENSCANG00000027099	RCL1	98	79.891	Colobus_angolensis_palliatus
ENSIPUG00000018054	RCL1	99	79.620	ENSCGRG00001013748	Rcl1	98	79.620	Cricetulus_griseus_chok1gshd
ENSIPUG00000018054	RCL1	89	79.027	ENSCGRG00000005843	Rcl1	99	79.027	Cricetulus_griseus_crigri
ENSIPUG00000018054	RCL1	100	83.871	ENSCSEG00000000712	rcl1	98	83.871	Cynoglossus_semilaevis
ENSIPUG00000018054	RCL1	100	85.484	ENSCVAG00000011536	rcl1	100	85.484	Cyprinodon_variegatus
ENSIPUG00000018054	RCL1	99	84.196	ENSDARG00000038312	rcl1	100	84.196	Danio_rerio
ENSIPUG00000018054	RCL1	72	80.075	ENSDNOG00000019911	RCL1	100	81.944	Dasypus_novemcinctus
ENSIPUG00000018054	RCL1	99	79.620	ENSDORG00000015645	Rcl1	98	79.620	Dipodomys_ordii
ENSIPUG00000018054	RCL1	99	54.570	FBgn0020909	Rtc1	97	55.795	Drosophila_melanogaster
ENSIPUG00000018054	RCL1	89	55.488	ENSETEG00000014087	-	82	91.304	Echinops_telfairi
ENSIPUG00000018054	RCL1	99	53.804	ENSEBUG00000016621	-	98	53.804	Eptatretus_burgeri
ENSIPUG00000018054	RCL1	99	80.163	ENSEASG00005010653	RCL1	98	80.163	Equus_asinus_asinus
ENSIPUG00000018054	RCL1	99	80.435	ENSECAG00000015973	RCL1	98	80.435	Equus_caballus
ENSIPUG00000018054	RCL1	99	68.207	ENSEEUG00000009801	RCL1	98	68.207	Erinaceus_europaeus
ENSIPUG00000018054	RCL1	100	81.183	ENSELUG00000007353	rcl1	100	81.183	Esox_lucius
ENSIPUG00000018054	RCL1	99	79.620	ENSFCAG00000014557	RCL1	98	79.620	Felis_catus
ENSIPUG00000018054	RCL1	98	70.879	ENSFALG00000010553	RCL1	96	70.879	Ficedula_albicollis
ENSIPUG00000018054	RCL1	89	77.744	ENSFDAG00000004209	RCL1	100	77.744	Fukomys_damarensis
ENSIPUG00000018054	RCL1	100	82.796	ENSFHEG00000011228	rcl1	100	82.796	Fundulus_heteroclitus
ENSIPUG00000018054	RCL1	99	82.289	ENSGMOG00000004677	rcl1	99	82.289	Gadus_morhua
ENSIPUG00000018054	RCL1	99	75.477	ENSGALG00000015024	RCL1	98	75.477	Gallus_gallus
ENSIPUG00000018054	RCL1	100	83.602	ENSGAFG00000007257	rcl1	100	83.602	Gambusia_affinis
ENSIPUG00000018054	RCL1	100	83.871	ENSGACG00000017474	rcl1	100	83.871	Gasterosteus_aculeatus
ENSIPUG00000018054	RCL1	99	77.446	ENSGAGG00000003689	RCL1	98	77.446	Gopherus_agassizii
ENSIPUG00000018054	RCL1	99	79.348	ENSGGOG00000015041	RCL1	98	79.348	Gorilla_gorilla
ENSIPUG00000018054	RCL1	100	83.065	ENSHBUG00000001393	rcl1	100	83.065	Haplochromis_burtoni
ENSIPUG00000018054	RCL1	99	78.804	ENSHGLG00000016452	RCL1	98	78.804	Heterocephalus_glaber_female
ENSIPUG00000018054	RCL1	99	66.033	ENSHGLG00000005368	-	98	66.033	Heterocephalus_glaber_female
ENSIPUG00000018054	RCL1	99	66.848	ENSHGLG00100018010	-	98	66.848	Heterocephalus_glaber_male
ENSIPUG00000018054	RCL1	99	72.826	ENSHGLG00100008718	-	98	72.826	Heterocephalus_glaber_male
ENSIPUG00000018054	RCL1	100	82.258	ENSHCOG00000020170	rcl1	100	82.258	Hippocampus_comes
ENSIPUG00000018054	RCL1	99	79.620	ENSSTOG00000000023	RCL1	98	79.620	Ictidomys_tridecemlineatus
ENSIPUG00000018054	RCL1	99	70.924	ENSJJAG00000015632	-	98	70.924	Jaculus_jaculus
ENSIPUG00000018054	RCL1	55	62.871	ENSJJAG00000000764	-	98	62.871	Jaculus_jaculus
ENSIPUG00000018054	RCL1	99	80.381	ENSJJAG00000022803	-	98	80.381	Jaculus_jaculus
ENSIPUG00000018054	RCL1	99	82.289	ENSKMAG00000011946	rcl1	99	82.289	Kryptolebias_marmoratus
ENSIPUG00000018054	RCL1	100	78.226	ENSLBEG00000003957	rcl1	100	78.226	Labrus_bergylta
ENSIPUG00000018054	RCL1	86	78.882	ENSLACG00000004594	RCL1	100	78.882	Latimeria_chalumnae
ENSIPUG00000018054	RCL1	100	86.828	ENSLOCG00000010148	rcl1	98	86.828	Lepisosteus_oculatus
ENSIPUG00000018054	RCL1	99	78.533	ENSLAFG00000017495	RCL1	98	78.533	Loxodonta_africana
ENSIPUG00000018054	RCL1	99	79.620	ENSMFAG00000037906	RCL1	98	79.620	Macaca_fascicularis
ENSIPUG00000018054	RCL1	99	79.620	ENSMNEG00000012288	RCL1	98	79.620	Macaca_nemestrina
ENSIPUG00000018054	RCL1	99	79.620	ENSMLEG00000043088	RCL1	98	79.620	Mandrillus_leucophaeus
ENSIPUG00000018054	RCL1	100	84.140	ENSMAMG00000008311	rcl1	100	84.140	Mastacembelus_armatus
ENSIPUG00000018054	RCL1	100	82.796	ENSMZEG00005017292	rcl1	100	82.796	Maylandia_zebra
ENSIPUG00000018054	RCL1	58	75.000	ENSMGAG00000002245	RCL1	100	75.000	Meleagris_gallopavo
ENSIPUG00000018054	RCL1	58	80.556	ENSMAUG00000008922	Rcl1	100	80.556	Mesocricetus_auratus
ENSIPUG00000018054	RCL1	99	79.837	ENSMICG00000015562	RCL1	98	79.837	Microcebus_murinus
ENSIPUG00000018054	RCL1	99	79.620	ENSMOCG00000012145	Rcl1	98	79.620	Microtus_ochrogaster
ENSIPUG00000018054	RCL1	100	80.697	ENSMMOG00000021264	rcl1	100	80.697	Mola_mola
ENSIPUG00000018054	RCL1	95	77.429	ENSMODG00000015377	RCL1	93	77.429	Monodelphis_domestica
ENSIPUG00000018054	RCL1	100	82.796	ENSMALG00000018618	rcl1	100	82.796	Monopterus_albus
ENSIPUG00000018054	RCL1	99	79.620	MGP_CAROLIEiJ_G0022853	Rcl1	98	79.620	Mus_caroli
ENSIPUG00000018054	RCL1	99	79.620	ENSMUSG00000024785	Rcl1	98	79.620	Mus_musculus
ENSIPUG00000018054	RCL1	99	80.163	MGP_PahariEiJ_G0014346	Rcl1	100	80.117	Mus_pahari
ENSIPUG00000018054	RCL1	99	79.891	MGP_SPRETEiJ_G0023771	Rcl1	100	79.532	Mus_spretus
ENSIPUG00000018054	RCL1	99	79.837	ENSMPUG00000004998	RCL1	98	79.837	Mustela_putorius_furo
ENSIPUG00000018054	RCL1	99	78.804	ENSMLUG00000009654	RCL1	98	78.804	Myotis_lucifugus
ENSIPUG00000018054	RCL1	99	80.163	ENSNGAG00000015327	Rcl1	98	80.163	Nannospalax_galili
ENSIPUG00000018054	RCL1	91	80.119	ENSNBRG00000019854	rcl1	99	75.758	Neolamprologus_brichardi
ENSIPUG00000018054	RCL1	99	77.446	ENSNLEG00000008891	RCL1	98	77.446	Nomascus_leucogenys
ENSIPUG00000018054	RCL1	99	71.467	ENSMEUG00000007653	RCL1	98	71.467	Notamacropus_eugenii
ENSIPUG00000018054	RCL1	99	79.620	ENSOPRG00000010965	RCL1	98	79.620	Ochotona_princeps
ENSIPUG00000018054	RCL1	89	66.261	ENSODEG00000004151	RCL1	96	66.261	Octodon_degus
ENSIPUG00000018054	RCL1	100	83.065	ENSONIG00000003871	rcl1	100	83.065	Oreochromis_niloticus
ENSIPUG00000018054	RCL1	66	75.904	ENSOANG00000013193	-	98	75.904	Ornithorhynchus_anatinus
ENSIPUG00000018054	RCL1	99	78.804	ENSOCUG00000008161	RCL1	98	78.804	Oryctolagus_cuniculus
ENSIPUG00000018054	RCL1	99	81.199	ENSORLG00000010443	rcl1	99	81.199	Oryzias_latipes
ENSIPUG00000018054	RCL1	99	81.471	ENSORLG00020012211	rcl1	99	81.471	Oryzias_latipes_hni
ENSIPUG00000018054	RCL1	99	80.926	ENSORLG00015001122	rcl1	99	80.926	Oryzias_latipes_hsok
ENSIPUG00000018054	RCL1	99	82.834	ENSOMEG00000022976	rcl1	87	82.834	Oryzias_melastigma
ENSIPUG00000018054	RCL1	99	79.292	ENSOGAG00000007480	RCL1	98	79.292	Otolemur_garnettii
ENSIPUG00000018054	RCL1	99	79.620	ENSOARG00000013463	RCL1	98	79.620	Ovis_aries
ENSIPUG00000018054	RCL1	99	79.620	ENSPPAG00000037958	RCL1	98	79.620	Pan_paniscus
ENSIPUG00000018054	RCL1	99	78.804	ENSPPRG00000022645	RCL1	98	78.804	Panthera_pardus
ENSIPUG00000018054	RCL1	88	78.899	ENSPTIG00000019031	RCL1	100	80.093	Panthera_tigris_altaica
ENSIPUG00000018054	RCL1	99	79.348	ENSPTRG00000020743	RCL1	98	79.348	Pan_troglodytes
ENSIPUG00000018054	RCL1	99	79.620	ENSPANG00000025151	RCL1	98	79.620	Papio_anubis
ENSIPUG00000018054	RCL1	100	81.452	ENSPKIG00000021022	rcl1	100	81.452	Paramormyrops_kingsleyae
ENSIPUG00000018054	RCL1	89	77.812	ENSPSIG00000012302	RCL1	100	77.812	Pelodiscus_sinensis
ENSIPUG00000018054	RCL1	100	83.871	ENSPMGG00000024007	rcl1	100	83.871	Periophthalmus_magnuspinnatus
ENSIPUG00000018054	RCL1	99	79.891	ENSPEMG00000023275	Rcl1	98	79.891	Peromyscus_maniculatus_bairdii
ENSIPUG00000018054	RCL1	99	77.446	ENSPCIG00000000188	RCL1	98	77.446	Phascolarctos_cinereus
ENSIPUG00000018054	RCL1	100	83.333	ENSPFOG00000019682	rcl1	99	83.333	Poecilia_formosa
ENSIPUG00000018054	RCL1	100	83.333	ENSPLAG00000022354	rcl1	100	83.333	Poecilia_latipinna
ENSIPUG00000018054	RCL1	100	83.333	ENSPMEG00000008131	rcl1	100	83.333	Poecilia_mexicana
ENSIPUG00000018054	RCL1	100	82.796	ENSPREG00000008032	rcl1	100	82.796	Poecilia_reticulata
ENSIPUG00000018054	RCL1	99	79.620	ENSPPYG00000019244	RCL1	98	79.620	Pongo_abelii
ENSIPUG00000018054	RCL1	99	72.283	ENSPCAG00000001440	RCL1	98	72.283	Procavia_capensis
ENSIPUG00000018054	RCL1	99	80.109	ENSPCOG00000009611	RCL1	98	80.109	Propithecus_coquereli
ENSIPUG00000018054	RCL1	99	79.076	ENSPVAG00000015752	RCL1	98	79.076	Pteropus_vampyrus
ENSIPUG00000018054	RCL1	100	82.527	ENSPNYG00000012910	rcl1	100	82.527	Pundamilia_nyererei
ENSIPUG00000018054	RCL1	100	88.649	ENSPNAG00000028307	rcl1	91	88.649	Pygocentrus_nattereri
ENSIPUG00000018054	RCL1	99	78.804	ENSRNOG00000015491	Rcl1	98	78.804	Rattus_norvegicus
ENSIPUG00000018054	RCL1	99	79.620	ENSRBIG00000035818	RCL1	98	79.620	Rhinopithecus_bieti
ENSIPUG00000018054	RCL1	99	79.620	ENSRROG00000029781	RCL1	98	79.620	Rhinopithecus_roxellana
ENSIPUG00000018054	RCL1	99	35.389	YOL010W	-	97	35.389	Saccharomyces_cerevisiae
ENSIPUG00000018054	RCL1	99	79.620	ENSSBOG00000026369	RCL1	98	79.620	Saimiri_boliviensis_boliviensis
ENSIPUG00000018054	RCL1	89	77.341	ENSSHAG00000014086	RCL1	100	77.341	Sarcophilus_harrisii
ENSIPUG00000018054	RCL1	100	82.527	ENSSFOG00015023020	rcl1	100	82.527	Scleropages_formosus
ENSIPUG00000018054	RCL1	100	84.409	ENSSMAG00000019751	rcl1	86	84.409	Scophthalmus_maximus
ENSIPUG00000018054	RCL1	100	83.065	ENSSDUG00000006349	rcl1	100	83.065	Seriola_dumerili
ENSIPUG00000018054	RCL1	100	83.333	ENSSLDG00000022076	rcl1	100	83.333	Seriola_lalandi_dorsalis
ENSIPUG00000018054	RCL1	99	79.076	ENSSARG00000009260	RCL1	98	79.076	Sorex_araneus
ENSIPUG00000018054	RCL1	99	78.261	ENSSPUG00000016330	RCL1	98	78.261	Sphenodon_punctatus
ENSIPUG00000018054	RCL1	100	84.409	ENSSPAG00000018038	rcl1	100	84.409	Stegastes_partitus
ENSIPUG00000018054	RCL1	99	80.707	ENSSSCG00000005217	RCL1	82	80.707	Sus_scrofa
ENSIPUG00000018054	RCL1	99	75.339	ENSTGUG00000005138	RCL1	98	75.339	Taeniopygia_guttata
ENSIPUG00000018054	RCL1	99	81.471	ENSTRUG00000010493	rcl1	99	81.471	Takifugu_rubripes
ENSIPUG00000018054	RCL1	99	80.109	ENSTNIG00000013214	rcl1	98	80.109	Tetraodon_nigroviridis
ENSIPUG00000018054	RCL1	99	74.728	ENSTBEG00000016339	RCL1	98	74.728	Tupaia_belangeri
ENSIPUG00000018054	RCL1	99	79.348	ENSTTRG00000016525	RCL1	98	79.348	Tursiops_truncatus
ENSIPUG00000018054	RCL1	99	80.707	ENSUAMG00000005598	RCL1	98	82.390	Ursus_americanus
ENSIPUG00000018054	RCL1	89	79.573	ENSUMAG00000017890	RCL1	97	79.573	Ursus_maritimus
ENSIPUG00000018054	RCL1	89	79.268	ENSVPAG00000009188	RCL1	100	79.268	Vicugna_pacos
ENSIPUG00000018054	RCL1	89	80.547	ENSVVUG00000007304	RCL1	89	80.547	Vulpes_vulpes
ENSIPUG00000018054	RCL1	99	69.293	ENSXETG00000000592	rcl1	98	69.293	Xenopus_tropicalis
ENSIPUG00000018054	RCL1	100	83.602	ENSXCOG00000004922	rcl1	100	83.602	Xiphophorus_couchianus
ENSIPUG00000018054	RCL1	100	83.602	ENSXMAG00000022366	RCL1	100	83.602	Xiphophorus_maculatus