EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000018288 (Gene tree)
Gene ID: 108261035
Gene Symbol: RAB20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: ras-related protein Rab-20-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 3645 bases
Position: chrKV453357.1:100708-104352
Accession: 108261035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000027007	MMR_HSR1	PF01926.23	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000028114	-	735	XM_017461836	ENSIPUP00000027007	244 (aa)	XP_017317325	W5ULZ0

Gene Model

Click here to download ENSIPUG00000018288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000018288	RAB20	53	32.374	ENSIPUG00000017447	rab34a	52	32.374
ENSIPUG00000018288	RAB20	57	35.862	ENSIPUG00000025100	rab11b	61	36.296
ENSIPUG00000018288	RAB20	62	35.032	ENSIPUG00000007415	rab14	54	37.931
ENSIPUG00000018288	RAB20	68	32.571	ENSIPUG00000018098	rab6b	62	33.846
ENSIPUG00000018288	RAB20	51	32.061	ENSIPUG00000020833	rab39b	61	32.061
ENSIPUG00000018288	RAB20	52	36.567	ENSIPUG00000021010	Rab30	67	36.567
ENSIPUG00000018288	RAB20	51	31.298	ENSIPUG00000024203	rab39ba	61	31.298
ENSIPUG00000018288	RAB20	60	31.410	ENSIPUG00000024531	rab34	56	30.519
ENSIPUG00000018288	RAB20	57	35.862	ENSIPUG00000019927	rab11bb	61	36.296
ENSIPUG00000018288	RAB20	65	31.361	ENSIPUG00000009784	-	53	36.885
ENSIPUG00000018288	RAB20	73	31.188	ENSIPUG00000022445	RAB7A	63	36.154
ENSIPUG00000018288	RAB20	60	36.184	ENSIPUG00000021401	Rab11a	61	36.296
ENSIPUG00000018288	RAB20	60	35.526	ENSIPUG00000012218	RAB25	62	36.296
ENSIPUG00000018288	RAB20	65	35.758	ENSIPUG00000018050	RAB31	62	40.000
ENSIPUG00000018288	RAB20	100	100.000	ENSIPUG00000000432	RAB20	100	100.000
ENSIPUG00000018288	RAB20	51	34.109	ENSIPUG00000021740	rab6a	65	34.109
ENSIPUG00000018288	RAB20	60	35.526	ENSIPUG00000006091	RAB11A	54	37.069
ENSIPUG00000018288	RAB20	51	32.558	ENSIPUG00000007539	rab2a	60	32.558
ENSIPUG00000018288	RAB20	50	37.302	ENSIPUG00000010794	rab22a	64	37.302
ENSIPUG00000018288	RAB20	50	37.879	ENSIPUG00000007246	rab7a	67	37.226
ENSIPUG00000018288	RAB20	66	32.143	ENSIPUG00000017684	rab33b	51	36.441
ENSIPUG00000018288	RAB20	65	32.121	ENSIPUG00000003199	rab13	64	34.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018288	RAB20	97	69.261	ENSATEG00000011117	rab20	100	69.261	Anabas_testudineus
ENSIPUG00000018288	RAB20	97	67.932	ENSAPLG00000011744	RAB20	100	67.932	Anas_platyrhynchos
ENSIPUG00000018288	RAB20	96	66.667	ENSACAG00000014045	RAB20	99	66.239	Anolis_carolinensis
ENSIPUG00000018288	RAB20	97	74.194	ENSAMXG00000003504	rab20	100	73.790	Astyanax_mexicanus
ENSIPUG00000018288	RAB20	96	68.936	ENSCPBG00000005866	RAB20	99	68.085	Chrysemys_picta_bellii
ENSIPUG00000018288	RAB20	96	74.477	ENSCSEG00000011160	rab20	100	73.640	Cynoglossus_semilaevis
ENSIPUG00000018288	RAB20	100	77.049	ENSDARG00000005049	rab20	100	77.049	Danio_rerio
ENSIPUG00000018288	RAB20	97	70.155	ENSELUG00000004092	rab20	98	69.261	Esox_lucius
ENSIPUG00000018288	RAB20	97	68.354	ENSFALG00000004409	RAB20	100	67.511	Ficedula_albicollis
ENSIPUG00000018288	RAB20	97	74.380	ENSGACG00000003527	rab20	100	73.554	Gasterosteus_aculeatus
ENSIPUG00000018288	RAB20	99	67.816	ENSHCOG00000013468	rab20	100	68.077	Hippocampus_comes
ENSIPUG00000018288	RAB20	97	67.932	ENSLACG00000011001	RAB20	99	67.083	Latimeria_chalumnae
ENSIPUG00000018288	RAB20	97	71.595	ENSMAMG00000015214	rab20	98	70.039	Mastacembelus_armatus
ENSIPUG00000018288	RAB20	97	70.711	ENSMMOG00000020022	rab20	100	70.661	Mola_mola
ENSIPUG00000018288	RAB20	97	63.025	ENSMEUG00000009442	RAB20	100	61.983	Notamacropus_eugenii
ENSIPUG00000018288	RAB20	84	49.533	ENSPMAG00000004439	rab20	98	50.467	Petromyzon_marinus
ENSIPUG00000018288	RAB20	97	79.583	ENSPNAG00000008867	rab20	99	79.583	Pygocentrus_nattereri
ENSIPUG00000018288	RAB20	97	69.767	ENSSMAG00000018818	rab20	100	68.627	Scophthalmus_maximus
ENSIPUG00000018288	RAB20	97	70.155	ENSSDUG00000005148	rab20	98	70.155	Seriola_dumerili
ENSIPUG00000018288	RAB20	97	67.511	ENSTGUG00000008797	RAB20	100	67.511	Taeniopygia_guttata
ENSIPUG00000018288	RAB20	97	66.667	ENSTRUG00000022951	rab20	98	66.667	Takifugu_rubripes
ENSIPUG00000018288	RAB20	91	70.796	ENSTNIG00000013920	rab20	100	68.201	Tetraodon_nigroviridis