EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000018336 (Gene tree)
Gene ID: 108256656
Gene Symbol: pop1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 33370 bases
Position: chr23:11722790-11756159
Accession: 108256656
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000027086	POP1	PF06978.11	5.1e-37	1	2
ENSIPUP00000027086	POP1	PF06978.11	5.1e-37	2	2
ENSIPUP00000027086	POPLD	PF08170.12	4.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000028194	-	7651	XM_017453735	ENSIPUP00000027086	995 (aa)	XP_017309224	A0A2D0PT71

Gene Model

Click here to download ENSIPUG00000018336's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG
ipu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018336's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018336	pop1	91	62.651	ENSG00000104356	POP1	100	44.918	Homo_sapiens
ENSIPUG00000018336	pop1	100	57.905	ENSAPOG00000008198	pop1	100	57.905	Acanthochromis_polyacanthus
ENSIPUG00000018336	pop1	93	52.427	ENSAMEG00000000556	POP1	100	45.330	Ailuropoda_melanoleuca
ENSIPUG00000018336	pop1	100	54.028	ENSACIG00000004169	POP1	100	54.028	Amphilophus_citrinellus
ENSIPUG00000018336	pop1	100	57.143	ENSAOCG00000010991	pop1	100	57.282	Amphiprion_ocellaris
ENSIPUG00000018336	pop1	100	53.673	ENSAPEG00000007607	pop1	100	53.816	Amphiprion_percula
ENSIPUG00000018336	pop1	100	55.263	ENSATEG00000024814	POP1	100	55.914	Anabas_testudineus
ENSIPUG00000018336	pop1	95	45.563	ENSAPLG00000014418	POP1	99	46.414	Anas_platyrhynchos
ENSIPUG00000018336	pop1	99	43.134	ENSACAG00000016083	POP1	100	43.169	Anolis_carolinensis
ENSIPUG00000018336	pop1	87	52.493	ENSANAG00000026360	POP1	99	52.493	Aotus_nancymaae
ENSIPUG00000018336	pop1	100	55.545	ENSACLG00000010951	pop1	99	55.891	Astatotilapia_calliptera
ENSIPUG00000018336	pop1	100	65.585	ENSAMXG00000014483	POP1	100	65.585	Astyanax_mexicanus
ENSIPUG00000018336	pop1	91	63.415	ENSBTAG00000012596	POP1	100	46.448	Bos_taurus
ENSIPUG00000018336	pop1	66	31.907	WBGene00015486	C05D11.9	97	31.907	Caenorhabditis_elegans
ENSIPUG00000018336	pop1	91	62.651	ENSCJAG00000015567	POP1	100	46.989	Callithrix_jacchus
ENSIPUG00000018336	pop1	100	46.038	ENSCAFG00000000469	POP1	100	46.038	Canis_familiaris
ENSIPUG00000018336	pop1	100	45.304	ENSCAFG00020026765	POP1	100	45.304	Canis_lupus_dingo
ENSIPUG00000018336	pop1	91	63.415	ENSCHIG00000017066	POP1	100	45.872	Capra_hircus
ENSIPUG00000018336	pop1	91	66.265	ENSTSYG00000003097	POP1	100	44.973	Carlito_syrichta
ENSIPUG00000018336	pop1	99	45.264	ENSCAPG00000007251	POP1	99	45.264	Cavia_aperea
ENSIPUG00000018336	pop1	99	45.914	ENSCPOG00000002901	POP1	99	45.914	Cavia_porcellus
ENSIPUG00000018336	pop1	91	62.651	ENSCCAG00000018939	POP1	100	45.412	Cebus_capucinus
ENSIPUG00000018336	pop1	91	62.651	ENSCATG00000040916	POP1	100	45.288	Cercocebus_atys
ENSIPUG00000018336	pop1	100	45.229	ENSCLAG00000007208	POP1	97	45.229	Chinchilla_lanigera
ENSIPUG00000018336	pop1	84	61.446	ENSCSAG00000012340	POP1	99	44.814	Chlorocebus_sabaeus
ENSIPUG00000018336	pop1	87	61.176	ENSCHOG00000011432	POP1	96	44.544	Choloepus_hoffmanni
ENSIPUG00000018336	pop1	100	44.320	ENSCPBG00000006373	POP1	100	45.918	Chrysemys_picta_bellii
ENSIPUG00000018336	pop1	73	31.410	ENSCING00000008323	-	81	31.410	Ciona_intestinalis
ENSIPUG00000018336	pop1	91	62.651	ENSCANG00000001647	POP1	100	44.859	Colobus_angolensis_palliatus
ENSIPUG00000018336	pop1	100	43.293	ENSCGRG00001017308	Pop1	100	44.764	Cricetulus_griseus_chok1gshd
ENSIPUG00000018336	pop1	100	40.758	ENSCGRG00000010824	Pop1	99	42.476	Cricetulus_griseus_crigri
ENSIPUG00000018336	pop1	100	53.026	ENSCSEG00000008737	POP1	100	53.314	Cynoglossus_semilaevis
ENSIPUG00000018336	pop1	100	55.186	ENSCVAG00000022248	pop1	99	55.338	Cyprinodon_variegatus
ENSIPUG00000018336	pop1	50	56.400	ENSDARG00000102087	pop1	99	56.600	Danio_rerio
ENSIPUG00000018336	pop1	100	43.688	ENSDNOG00000019974	POP1	100	43.688	Dasypus_novemcinctus
ENSIPUG00000018336	pop1	91	63.855	ENSDORG00000015384	Pop1	100	38.810	Dipodomys_ordii
ENSIPUG00000018336	pop1	88	45.626	ENSETEG00000007839	POP1	88	45.626	Echinops_telfairi
ENSIPUG00000018336	pop1	50	43.775	ENSEBUG00000009897	pop1	96	43.775	Eptatretus_burgeri
ENSIPUG00000018336	pop1	100	44.186	ENSEASG00005003189	POP1	98	44.607	Equus_asinus_asinus
ENSIPUG00000018336	pop1	100	43.907	ENSECAG00000024236	POP1	100	44.252	Equus_caballus
ENSIPUG00000018336	pop1	53	74.026	ENSEEUG00000003050	-	54	74.026	Erinaceus_europaeus
ENSIPUG00000018336	pop1	99	56.751	ENSELUG00000003526	pop1	99	56.611	Esox_lucius
ENSIPUG00000018336	pop1	100	44.528	ENSFCAG00000002168	POP1	100	45.396	Felis_catus
ENSIPUG00000018336	pop1	100	43.547	ENSFALG00000005711	POP1	100	44.907	Ficedula_albicollis
ENSIPUG00000018336	pop1	100	43.494	ENSFDAG00000017068	POP1	100	45.164	Fukomys_damarensis
ENSIPUG00000018336	pop1	99	55.457	ENSFHEG00000019518	pop1	99	55.457	Fundulus_heteroclitus
ENSIPUG00000018336	pop1	100	52.174	ENSGMOG00000000659	POP1	100	52.663	Gadus_morhua
ENSIPUG00000018336	pop1	100	54.980	ENSGAFG00000019770	POP1	99	55.034	Gambusia_affinis
ENSIPUG00000018336	pop1	100	51.930	ENSGACG00000003499	pop1	100	52.206	Gasterosteus_aculeatus
ENSIPUG00000018336	pop1	100	44.517	ENSGAGG00000011737	POP1	98	44.796	Gopherus_agassizii
ENSIPUG00000018336	pop1	91	62.651	ENSGGOG00000003176	POP1	100	44.828	Gorilla_gorilla
ENSIPUG00000018336	pop1	100	55.447	ENSHBUG00000021583	pop1	99	55.696	Haplochromis_burtoni
ENSIPUG00000018336	pop1	88	62.025	ENSHGLG00000006029	POP1	92	51.822	Heterocephalus_glaber_female
ENSIPUG00000018336	pop1	88	62.025	ENSHGLG00100016879	POP1	92	51.822	Heterocephalus_glaber_male
ENSIPUG00000018336	pop1	100	52.216	ENSHCOG00000013888	pop1	100	52.216	Hippocampus_comes
ENSIPUG00000018336	pop1	100	45.312	ENSSTOG00000011455	POP1	97	45.312	Ictidomys_tridecemlineatus
ENSIPUG00000018336	pop1	91	60.241	ENSJJAG00000013325	Pop1	100	44.082	Jaculus_jaculus
ENSIPUG00000018336	pop1	100	56.004	ENSKMAG00000001346	POP1	100	55.926	Kryptolebias_marmoratus
ENSIPUG00000018336	pop1	100	52.569	ENSLBEG00000024457	POP1	100	52.569	Labrus_bergylta
ENSIPUG00000018336	pop1	97	46.480	ENSLACG00000012498	POP1	100	46.577	Latimeria_chalumnae
ENSIPUG00000018336	pop1	90	62.821	ENSLOCG00000009817	POP1	99	51.265	Lepisosteus_oculatus
ENSIPUG00000018336	pop1	91	61.176	ENSLAFG00000010770	POP1	100	45.205	Loxodonta_africana
ENSIPUG00000018336	pop1	91	62.651	ENSMFAG00000000347	POP1	100	45.197	Macaca_fascicularis
ENSIPUG00000018336	pop1	91	62.651	ENSMNEG00000036870	POP1	100	44.313	Macaca_nemestrina
ENSIPUG00000018336	pop1	91	62.651	ENSMLEG00000034986	POP1	100	45.105	Mandrillus_leucophaeus
ENSIPUG00000018336	pop1	100	55.136	ENSMAMG00000004040	pop1	100	55.470	Mastacembelus_armatus
ENSIPUG00000018336	pop1	100	55.642	ENSMZEG00005025448	pop1	99	55.891	Maylandia_zebra
ENSIPUG00000018336	pop1	91	63.855	ENSMGAG00000012167	POP1	100	45.109	Meleagris_gallopavo
ENSIPUG00000018336	pop1	99	45.648	ENSMAUG00000017537	Pop1	99	45.648	Mesocricetus_auratus
ENSIPUG00000018336	pop1	100	44.869	ENSMICG00000004361	POP1	100	44.963	Microcebus_murinus
ENSIPUG00000018336	pop1	91	62.651	ENSMOCG00000006356	Pop1	99	44.793	Microtus_ochrogaster
ENSIPUG00000018336	pop1	100	50.450	ENSMMOG00000018242	pop1	100	51.403	Mola_mola
ENSIPUG00000018336	pop1	92	59.140	ENSMODG00000006561	POP1	99	43.078	Monodelphis_domestica
ENSIPUG00000018336	pop1	100	55.156	ENSMALG00000012621	POP1	100	55.350	Monopterus_albus
ENSIPUG00000018336	pop1	100	43.454	MGP_CAROLIEiJ_G0019726	Pop1	100	44.546	Mus_caroli
ENSIPUG00000018336	pop1	99	42.804	ENSMUSG00000022325	Pop1	99	44.587	Mus_musculus
ENSIPUG00000018336	pop1	99	43.203	MGP_PahariEiJ_G0019735	Pop1	99	44.301	Mus_pahari
ENSIPUG00000018336	pop1	100	41.971	MGP_SPRETEiJ_G0020622	Pop1	99	44.771	Mus_spretus
ENSIPUG00000018336	pop1	100	45.654	ENSMPUG00000015250	POP1	100	45.654	Mustela_putorius_furo
ENSIPUG00000018336	pop1	99	44.689	ENSMLUG00000010204	POP1	99	44.780	Myotis_lucifugus
ENSIPUG00000018336	pop1	91	62.195	ENSNGAG00000001582	Pop1	100	45.064	Nannospalax_galili
ENSIPUG00000018336	pop1	100	52.480	ENSNBRG00000002356	pop1	100	52.720	Neolamprologus_brichardi
ENSIPUG00000018336	pop1	91	61.446	ENSNLEG00000002541	POP1	100	45.288	Nomascus_leucogenys
ENSIPUG00000018336	pop1	89	55.685	ENSMEUG00000003118	POP1	90	55.685	Notamacropus_eugenii
ENSIPUG00000018336	pop1	99	44.004	ENSOPRG00000007667	POP1	99	44.004	Ochotona_princeps
ENSIPUG00000018336	pop1	91	60.976	ENSODEG00000003984	POP1	99	45.280	Octodon_degus
ENSIPUG00000018336	pop1	100	55.750	ENSONIG00000016445	pop1	99	56.098	Oreochromis_niloticus
ENSIPUG00000018336	pop1	58	46.078	ENSOANG00000001278	-	94	46.078	Ornithorhynchus_anatinus
ENSIPUG00000018336	pop1	93	54.000	ENSOCUG00000017400	POP1	100	44.083	Oryctolagus_cuniculus
ENSIPUG00000018336	pop1	100	55.853	ENSORLG00000002839	pop1	99	56.574	Oryzias_latipes
ENSIPUG00000018336	pop1	100	51.996	ENSORLG00020022450	POP1	100	52.611	Oryzias_latipes_hni
ENSIPUG00000018336	pop1	100	55.917	ENSORLG00015012746	POP1	99	56.324	Oryzias_latipes_hsok
ENSIPUG00000018336	pop1	100	54.599	ENSOMEG00000006915	pop1	99	54.797	Oryzias_melastigma
ENSIPUG00000018336	pop1	100	43.625	ENSOGAG00000001466	POP1	100	45.421	Otolemur_garnettii
ENSIPUG00000018336	pop1	91	62.651	ENSPPAG00000018410	POP1	100	44.918	Pan_paniscus
ENSIPUG00000018336	pop1	100	45.354	ENSPPRG00000005002	POP1	100	45.354	Panthera_pardus
ENSIPUG00000018336	pop1	100	44.206	ENSPTIG00000016527	POP1	100	45.354	Panthera_tigris_altaica
ENSIPUG00000018336	pop1	91	62.651	ENSPTRG00000020458	POP1	100	44.909	Pan_troglodytes
ENSIPUG00000018336	pop1	91	62.651	ENSPANG00000009704	POP1	100	44.859	Papio_anubis
ENSIPUG00000018336	pop1	100	54.211	ENSPKIG00000016325	POP1	100	54.203	Paramormyrops_kingsleyae
ENSIPUG00000018336	pop1	100	45.849	ENSPSIG00000012343	POP1	100	45.722	Pelodiscus_sinensis
ENSIPUG00000018336	pop1	100	50.000	ENSPMGG00000022253	POP1	100	50.095	Periophthalmus_magnuspinnatus
ENSIPUG00000018336	pop1	99	43.710	ENSPEMG00000023633	Pop1	99	45.018	Peromyscus_maniculatus_bairdii
ENSIPUG00000018336	pop1	93	39.200	ENSPMAG00000003209	POP1	99	39.333	Petromyzon_marinus
ENSIPUG00000018336	pop1	91	67.949	ENSPCIG00000012216	POP1	98	67.949	Phascolarctos_cinereus
ENSIPUG00000018336	pop1	100	55.739	ENSPFOG00000012490	POP1	99	55.794	Poecilia_formosa
ENSIPUG00000018336	pop1	100	55.599	ENSPLAG00000004646	POP1	99	55.653	Poecilia_latipinna
ENSIPUG00000018336	pop1	100	56.043	ENSPMEG00000019592	POP1	99	56.098	Poecilia_mexicana
ENSIPUG00000018336	pop1	100	55.286	ENSPREG00000020951	POP1	99	55.340	Poecilia_reticulata
ENSIPUG00000018336	pop1	91	62.651	ENSPPYG00000018777	POP1	100	44.918	Pongo_abelii
ENSIPUG00000018336	pop1	100	43.290	ENSPCAG00000016662	POP1	100	43.290	Procavia_capensis
ENSIPUG00000018336	pop1	100	44.922	ENSPCOG00000019420	POP1	100	44.922	Propithecus_coquereli
ENSIPUG00000018336	pop1	91	65.823	ENSPVAG00000014468	POP1	100	44.628	Pteropus_vampyrus
ENSIPUG00000018336	pop1	100	53.511	ENSPNYG00000004476	pop1	99	53.663	Pundamilia_nyererei
ENSIPUG00000018336	pop1	100	66.339	ENSPNAG00000000265	pop1	100	66.339	Pygocentrus_nattereri
ENSIPUG00000018336	pop1	99	43.470	ENSRNOG00000005243	Pop1	99	43.893	Rattus_norvegicus
ENSIPUG00000018336	pop1	91	62.651	ENSRBIG00000007996	POP1	100	45.380	Rhinopithecus_bieti
ENSIPUG00000018336	pop1	91	62.651	ENSRROG00000012334	POP1	100	45.471	Rhinopithecus_roxellana
ENSIPUG00000018336	pop1	90	62.651	ENSSBOG00000020830	POP1	100	44.434	Saimiri_boliviensis_boliviensis
ENSIPUG00000018336	pop1	99	44.891	ENSSHAG00000000296	POP1	99	44.891	Sarcophilus_harrisii
ENSIPUG00000018336	pop1	99	56.415	ENSSFOG00015007429	pop1	98	56.415	Scleropages_formosus
ENSIPUG00000018336	pop1	100	54.545	ENSSMAG00000010467	POP1	100	54.945	Scophthalmus_maximus
ENSIPUG00000018336	pop1	100	56.123	ENSSDUG00000007817	POP1	100	56.606	Seriola_dumerili
ENSIPUG00000018336	pop1	100	56.492	ENSSLDG00000012565	POP1	100	56.551	Seriola_lalandi_dorsalis
ENSIPUG00000018336	pop1	100	40.758	ENSSPUG00000003550	-	100	42.791	Sphenodon_punctatus
ENSIPUG00000018336	pop1	100	53.158	ENSSPAG00000014955	pop1	100	53.301	Stegastes_partitus
ENSIPUG00000018336	pop1	99	44.962	ENSSSCG00000006078	POP1	99	45.741	Sus_scrofa
ENSIPUG00000018336	pop1	95	43.086	ENSTGUG00000012011	-	99	43.157	Taeniopygia_guttata
ENSIPUG00000018336	pop1	100	53.477	ENSTRUG00000010856	pop1	100	53.477	Takifugu_rubripes
ENSIPUG00000018336	pop1	95	53.053	ENSTNIG00000013297	pop1	98	53.053	Tetraodon_nigroviridis
ENSIPUG00000018336	pop1	88	58.511	ENSTBEG00000014214	POP1	97	44.466	Tupaia_belangeri
ENSIPUG00000018336	pop1	91	63.415	ENSTTRG00000016071	POP1	100	42.870	Tursiops_truncatus
ENSIPUG00000018336	pop1	92	53.398	ENSUAMG00000017309	POP1	100	46.768	Ursus_americanus
ENSIPUG00000018336	pop1	93	52.427	ENSUMAG00000016952	POP1	100	50.394	Ursus_maritimus
ENSIPUG00000018336	pop1	78	60.241	ENSVPAG00000008278	POP1	82	51.944	Vicugna_pacos
ENSIPUG00000018336	pop1	100	44.444	ENSVVUG00000010994	POP1	100	44.444	Vulpes_vulpes
ENSIPUG00000018336	pop1	100	48.891	ENSXCOG00000017043	POP1	100	49.323	Xiphophorus_couchianus
ENSIPUG00000018336	pop1	100	54.810	ENSXMAG00000002472	POP1	100	54.810	Xiphophorus_maculatus