EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000018531 (Gene tree)
Gene ID: 108256557
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 23983 bases
Position: chr23:11938589-11962571
Accession: 108256557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000027356	ResIII	PF04851.15	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000028469	-	3588	XM_017453555	ENSIPUP00000027356	941 (aa)	XP_017309044	A0A2D0PSP0

Gene Model

Click here to download ENSIPUG00000018531's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018531's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000018531	rad54b	53	30.127	ENSIPUG00000022817	smarcad1b	56	30.127
ENSIPUG00000018531	rad54b	51	32.087	ENSIPUG00000000242	smarcad1a	50	32.108
ENSIPUG00000018531	rad54b	62	47.659	ENSIPUG00000015999	rad54l	84	47.659

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018531	rad54b	77	57.844	ENSG00000265817	FSBP	99	57.844	Homo_sapiens
ENSIPUG00000018531	rad54b	99	51.756	ENSG00000197275	RAD54B	99	51.756	Homo_sapiens
ENSIPUG00000018531	rad54b	99	52.637	ENSAMEG00000005834	-	100	52.426	Ailuropoda_melanoleuca
ENSIPUG00000018531	rad54b	99	60.851	ENSACIG00000013005	rad54b	99	60.851	Amphilophus_citrinellus
ENSIPUG00000018531	rad54b	99	61.722	ENSAOCG00000008523	rad54b	99	61.826	Amphiprion_ocellaris
ENSIPUG00000018531	rad54b	99	59.362	ENSAPEG00000001673	rad54b	99	59.574	Amphiprion_percula
ENSIPUG00000018531	rad54b	99	62.008	ENSATEG00000001527	rad54b	99	62.137	Anabas_testudineus
ENSIPUG00000018531	rad54b	99	55.057	ENSAPLG00000014366	-	99	55.057	Anas_platyrhynchos
ENSIPUG00000018531	rad54b	84	59.119	ENSACAG00000003671	-	98	59.119	Anolis_carolinensis
ENSIPUG00000018531	rad54b	68	58.833	ENSANAG00000019528	-	99	58.833	Aotus_nancymaae
ENSIPUG00000018531	rad54b	83	68.805	ENSACLG00000007826	rad54b	91	68.805	Astatotilapia_calliptera
ENSIPUG00000018531	rad54b	84	82.206	ENSAMXG00000039985	rad54b	95	82.309	Astyanax_mexicanus
ENSIPUG00000018531	rad54b	99	51.411	ENSBTAG00000000632	RAD54B	100	51.411	Bos_taurus
ENSIPUG00000018531	rad54b	78	35.602	WBGene00013792	Y116A8C.13	85	35.264	Caenorhabditis_elegans
ENSIPUG00000018531	rad54b	99	52.256	ENSCJAG00000000080	-	99	57.629	Callithrix_jacchus
ENSIPUG00000018531	rad54b	99	53.102	ENSCAFG00000009179	RAD54B	99	53.102	Canis_familiaris
ENSIPUG00000018531	rad54b	99	53.207	ENSCAFG00020012084	-	99	53.207	Canis_lupus_dingo
ENSIPUG00000018531	rad54b	99	51.903	ENSCHIG00000008230	-	100	51.903	Capra_hircus
ENSIPUG00000018531	rad54b	99	52.220	ENSTSYG00000013234	-	100	52.220	Carlito_syrichta
ENSIPUG00000018531	rad54b	99	52.266	ENSCPOG00000011643	-	99	52.266	Cavia_porcellus
ENSIPUG00000018531	rad54b	99	52.537	ENSCCAG00000011754	-	99	57.572	Cebus_capucinus
ENSIPUG00000018531	rad54b	99	52.798	ENSCATG00000030661	-	99	58.060	Cercocebus_atys
ENSIPUG00000018531	rad54b	99	52.615	ENSCLAG00000010476	-	99	52.615	Chinchilla_lanigera
ENSIPUG00000018531	rad54b	99	52.816	ENSCSAG00000012712	-	99	52.816	Chlorocebus_sabaeus
ENSIPUG00000018531	rad54b	99	55.333	ENSCPBG00000003204	-	98	56.766	Chrysemys_picta_bellii
ENSIPUG00000018531	rad54b	99	52.604	ENSCANG00000017939	-	99	57.923	Colobus_angolensis_palliatus
ENSIPUG00000018531	rad54b	99	52.482	ENSCGRG00001020184	Rad54b	100	52.482	Cricetulus_griseus_chok1gshd
ENSIPUG00000018531	rad54b	99	51.589	ENSCGRG00000016752	Rad54b	100	51.589	Cricetulus_griseus_crigri
ENSIPUG00000018531	rad54b	85	65.675	ENSCSEG00000001601	rad54b	94	65.675	Cynoglossus_semilaevis
ENSIPUG00000018531	rad54b	99	61.040	ENSCVAG00000009200	rad54b	99	61.040	Cyprinodon_variegatus
ENSIPUG00000018531	rad54b	99	73.093	ENSDARG00000092134	rad54b	99	79.193	Danio_rerio
ENSIPUG00000018531	rad54b	99	52.301	ENSDNOG00000015535	-	99	52.301	Dasypus_novemcinctus
ENSIPUG00000018531	rad54b	99	52.714	ENSDORG00000002492	Rad54b	100	53.115	Dipodomys_ordii
ENSIPUG00000018531	rad54b	87	54.272	ENSETEG00000010605	-	100	54.272	Echinops_telfairi
ENSIPUG00000018531	rad54b	83	51.250	ENSEBUG00000009104	rad54b	98	46.793	Eptatretus_burgeri
ENSIPUG00000018531	rad54b	84	56.948	ENSEASG00005004021	-	89	56.948	Equus_asinus_asinus
ENSIPUG00000018531	rad54b	99	51.945	ENSECAG00000021949	-	99	51.945	Equus_caballus
ENSIPUG00000018531	rad54b	69	54.375	ENSEEUG00000008056	-	72	54.375	Erinaceus_europaeus
ENSIPUG00000018531	rad54b	99	62.343	ENSELUG00000009287	rad54b	99	62.343	Esox_lucius
ENSIPUG00000018531	rad54b	99	52.526	ENSFCAG00000015513	-	100	57.895	Felis_catus
ENSIPUG00000018531	rad54b	99	55.031	ENSFALG00000005467	-	99	55.031	Ficedula_albicollis
ENSIPUG00000018531	rad54b	99	52.292	ENSFDAG00000020541	-	99	52.201	Fukomys_damarensis
ENSIPUG00000018531	rad54b	83	66.204	ENSFHEG00000014382	rad54b	86	66.204	Fundulus_heteroclitus
ENSIPUG00000018531	rad54b	84	65.672	ENSGMOG00000014774	rad54b	99	65.309	Gadus_morhua
ENSIPUG00000018531	rad54b	99	54.869	ENSGALG00000043597	RAD54B	99	54.869	Gallus_gallus
ENSIPUG00000018531	rad54b	99	61.466	ENSGAFG00000007901	rad54b	97	65.274	Gambusia_affinis
ENSIPUG00000018531	rad54b	99	60.293	ENSGACG00000009128	rad54b	99	60.293	Gasterosteus_aculeatus
ENSIPUG00000018531	rad54b	99	54.900	ENSGAGG00000018747	-	99	54.900	Gopherus_agassizii
ENSIPUG00000018531	rad54b	99	52.461	ENSGGOG00000023516	-	100	52.461	Gorilla_gorilla
ENSIPUG00000018531	rad54b	99	62.866	ENSHBUG00000016017	rad54b	99	62.866	Haplochromis_burtoni
ENSIPUG00000018531	rad54b	99	51.512	ENSHGLG00000008263	RAD54B	99	51.512	Heterocephalus_glaber_female
ENSIPUG00000018531	rad54b	99	50.777	ENSHGLG00100008108	-	99	50.777	Heterocephalus_glaber_male
ENSIPUG00000018531	rad54b	99	58.466	ENSHCOG00000004764	rad54b	98	61.132	Hippocampus_comes
ENSIPUG00000018531	rad54b	100	52.033	ENSSTOG00000010791	-	99	52.033	Ictidomys_tridecemlineatus
ENSIPUG00000018531	rad54b	99	52.947	ENSJJAG00000010314	Rad54b	99	52.947	Jaculus_jaculus
ENSIPUG00000018531	rad54b	99	59.958	ENSKMAG00000004744	rad54b	99	59.958	Kryptolebias_marmoratus
ENSIPUG00000018531	rad54b	79	62.748	ENSLACG00000000859	-	100	62.748	Latimeria_chalumnae
ENSIPUG00000018531	rad54b	100	58.896	ENSLOCG00000010100	rad54b	97	64.149	Lepisosteus_oculatus
ENSIPUG00000018531	rad54b	86	54.590	ENSLAFG00000015315	-	99	54.590	Loxodonta_africana
ENSIPUG00000018531	rad54b	99	52.710	ENSMFAG00000031629	-	99	58.060	Macaca_fascicularis
ENSIPUG00000018531	rad54b	99	52.710	ENSMMUG00000005659	-	99	52.710	Macaca_mulatta
ENSIPUG00000018531	rad54b	99	52.922	ENSMNEG00000016408	-	99	52.922	Macaca_nemestrina
ENSIPUG00000018531	rad54b	99	52.710	ENSMLEG00000006946	-	99	52.710	Mandrillus_leucophaeus
ENSIPUG00000018531	rad54b	99	59.034	ENSMAMG00000012269	rad54b	99	58.910	Mastacembelus_armatus
ENSIPUG00000018531	rad54b	99	62.552	ENSMZEG00005005281	rad54b	94	68.640	Maylandia_zebra
ENSIPUG00000018531	rad54b	99	54.450	ENSMGAG00000012024	-	99	54.450	Meleagris_gallopavo
ENSIPUG00000018531	rad54b	99	52.426	ENSMAUG00000013586	Rad54b	100	52.426	Mesocricetus_auratus
ENSIPUG00000018531	rad54b	88	55.713	ENSMICG00000000754	-	96	55.713	Microcebus_murinus
ENSIPUG00000018531	rad54b	99	52.321	ENSMOCG00000020035	Rad54b	99	52.321	Microtus_ochrogaster
ENSIPUG00000018531	rad54b	84	65.496	ENSMMOG00000003394	rad54b	89	65.496	Mola_mola
ENSIPUG00000018531	rad54b	84	57.947	ENSMODG00000007343	-	97	57.947	Monodelphis_domestica
ENSIPUG00000018531	rad54b	68	66.822	ENSMALG00000001520	rad54b	99	66.822	Monopterus_albus
ENSIPUG00000018531	rad54b	99	51.746	MGP_CAROLIEiJ_G0025810	Rad54b	99	51.746	Mus_caroli
ENSIPUG00000018531	rad54b	99	51.003	ENSMUSG00000078773	Rad54b	99	50.949	Mus_musculus
ENSIPUG00000018531	rad54b	99	52.119	MGP_PahariEiJ_G0023933	Rad54b	99	52.119	Mus_pahari
ENSIPUG00000018531	rad54b	99	51.317	MGP_SPRETEiJ_G0026758	Rad54b	99	51.371	Mus_spretus
ENSIPUG00000018531	rad54b	84	57.731	ENSMPUG00000008878	-	98	57.731	Mustela_putorius_furo
ENSIPUG00000018531	rad54b	99	52.991	ENSMLUG00000008953	-	99	52.991	Myotis_lucifugus
ENSIPUG00000018531	rad54b	99	50.570	ENSNGAG00000017537	Rad54b	100	50.570	Nannospalax_galili
ENSIPUG00000018531	rad54b	88	66.786	ENSNBRG00000013394	rad54b	95	66.786	Neolamprologus_brichardi
ENSIPUG00000018531	rad54b	99	52.046	ENSNLEG00000003062	-	99	57.572	Nomascus_leucogenys
ENSIPUG00000018531	rad54b	67	58.929	ENSMEUG00000012426	-	69	59.536	Notamacropus_eugenii
ENSIPUG00000018531	rad54b	99	52.421	ENSODEG00000019564	-	99	52.421	Octodon_degus
ENSIPUG00000018531	rad54b	84	53.383	ENSODEG00000002650	-	96	58.833	Octodon_degus
ENSIPUG00000018531	rad54b	99	62.487	ENSONIG00000006067	rad54b	99	62.487	Oreochromis_niloticus
ENSIPUG00000018531	rad54b	80	58.005	ENSOANG00000011348	-	99	58.005	Ornithorhynchus_anatinus
ENSIPUG00000018531	rad54b	99	53.347	ENSOCUG00000016478	-	99	53.347	Oryctolagus_cuniculus
ENSIPUG00000018531	rad54b	99	60.852	ENSORLG00000008918	rad54b	99	69.290	Oryzias_latipes
ENSIPUG00000018531	rad54b	68	69.290	ENSORLG00020012171	rad54b	99	69.290	Oryzias_latipes_hni
ENSIPUG00000018531	rad54b	99	60.928	ENSORLG00015018536	rad54b	99	60.928	Oryzias_latipes_hsok
ENSIPUG00000018531	rad54b	82	67.179	ENSOMEG00000004345	rad54b	99	67.179	Oryzias_melastigma
ENSIPUG00000018531	rad54b	99	51.879	ENSOGAG00000007854	-	99	51.879	Otolemur_garnettii
ENSIPUG00000018531	rad54b	84	57.090	ENSOARG00000007691	-	98	57.090	Ovis_aries
ENSIPUG00000018531	rad54b	99	51.468	ENSPPAG00000029572	-	99	51.468	Pan_paniscus
ENSIPUG00000018531	rad54b	99	52.997	ENSPPRG00000007571	-	100	58.165	Panthera_pardus
ENSIPUG00000018531	rad54b	77	57.895	ENSPTIG00000012670	-	100	57.895	Panthera_tigris_altaica
ENSIPUG00000018531	rad54b	99	52.411	ENSPTRG00000020427	-	99	57.708	Pan_troglodytes
ENSIPUG00000018531	rad54b	99	52.710	ENSPANG00000019566	-	99	52.710	Papio_anubis
ENSIPUG00000018531	rad54b	99	61.538	ENSPKIG00000014974	rad54b	99	61.538	Paramormyrops_kingsleyae
ENSIPUG00000018531	rad54b	99	54.286	ENSPSIG00000002383	-	95	59.724	Pelodiscus_sinensis
ENSIPUG00000018531	rad54b	99	51.688	ENSPEMG00000012133	Rad54b	100	51.688	Peromyscus_maniculatus_bairdii
ENSIPUG00000018531	rad54b	84	58.540	ENSPMAG00000002916	rad54b	99	58.540	Petromyzon_marinus
ENSIPUG00000018531	rad54b	84	58.772	ENSPCIG00000020151	-	92	58.595	Phascolarctos_cinereus
ENSIPUG00000018531	rad54b	99	61.203	ENSPFOG00000023411	rad54b	99	61.203	Poecilia_formosa
ENSIPUG00000018531	rad54b	99	61.307	ENSPLAG00000010430	rad54b	99	61.307	Poecilia_latipinna
ENSIPUG00000018531	rad54b	99	61.411	ENSPMEG00000016873	rad54b	99	61.411	Poecilia_mexicana
ENSIPUG00000018531	rad54b	99	61.371	ENSPREG00000018443	rad54b	99	61.371	Poecilia_reticulata
ENSIPUG00000018531	rad54b	99	52.123	ENSPPYG00000018750	-	99	52.123	Pongo_abelii
ENSIPUG00000018531	rad54b	99	52.466	ENSPCOG00000026845	-	99	57.572	Propithecus_coquereli
ENSIPUG00000018531	rad54b	79	57.447	ENSPVAG00000000261	-	86	57.447	Pteropus_vampyrus
ENSIPUG00000018531	rad54b	84	67.500	ENSPNYG00000018303	rad54b	96	67.500	Pundamilia_nyererei
ENSIPUG00000018531	rad54b	99	77.244	ENSPNAG00000000295	rad54b	99	77.244	Pygocentrus_nattereri
ENSIPUG00000018531	rad54b	99	52.482	ENSRNOG00000039949	Rad54b	100	52.587	Rattus_norvegicus
ENSIPUG00000018531	rad54b	99	52.206	ENSRBIG00000020419	-	99	52.206	Rhinopithecus_bieti
ENSIPUG00000018531	rad54b	99	52.206	ENSRROG00000039897	-	99	52.206	Rhinopithecus_roxellana
ENSIPUG00000018531	rad54b	76	37.103	YBR073W	RDH54	79	37.103	Saccharomyces_cerevisiae
ENSIPUG00000018531	rad54b	99	52.270	ENSSBOG00000028501	-	99	52.270	Saimiri_boliviensis_boliviensis
ENSIPUG00000018531	rad54b	99	53.542	ENSSHAG00000017038	-	99	53.542	Sarcophilus_harrisii
ENSIPUG00000018531	rad54b	65	66.393	ENSSFOG00015008483	rad54b	95	66.393	Scleropages_formosus
ENSIPUG00000018531	rad54b	99	60.494	ENSSMAG00000018659	rad54b	99	60.515	Scophthalmus_maximus
ENSIPUG00000018531	rad54b	96	61.970	ENSSDUG00000001122	rad54b	96	62.182	Seriola_dumerili
ENSIPUG00000018531	rad54b	99	61.626	ENSSLDG00000013787	rad54b	99	61.831	Seriola_lalandi_dorsalis
ENSIPUG00000018531	rad54b	99	53.628	ENSSPUG00000016497	-	99	53.628	Sphenodon_punctatus
ENSIPUG00000018531	rad54b	83	67.632	ENSSPAG00000012800	rad54b	89	67.632	Stegastes_partitus
ENSIPUG00000018531	rad54b	99	52.211	ENSSSCG00000006101	-	98	57.822	Sus_scrofa
ENSIPUG00000018531	rad54b	99	54.984	ENSTGUG00000011880	-	99	54.984	Taeniopygia_guttata
ENSIPUG00000018531	rad54b	99	60.165	ENSTRUG00000010015	rad54b	99	60.703	Takifugu_rubripes
ENSIPUG00000018531	rad54b	99	49.419	ENSTTRG00000006312	-	100	49.419	Tursiops_truncatus
ENSIPUG00000018531	rad54b	99	52.637	ENSUMAG00000016401	-	100	52.637	Ursus_maritimus
ENSIPUG00000018531	rad54b	99	52.643	ENSVPAG00000003157	-	100	52.643	Vicugna_pacos
ENSIPUG00000018531	rad54b	99	45.331	ENSXETG00000025924	rad54b	98	49.136	Xenopus_tropicalis
ENSIPUG00000018531	rad54b	87	65.228	ENSXMAG00000013141	rad54b	96	65.228	Xiphophorus_maculatus