EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000018724 (Gene tree)
Gene ID: 108255406
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 4117 bases
Position: chr22:13577749-13581865
Accession: 108255406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000027639	RRM_5	PF13893.6	9.1e-09	1	2
ENSIPUP00000027639	RRM_5	PF13893.6	9.1e-09	2	2
ENSIPUP00000027639	RRM_1	PF00076.22	1.4e-65	1	3
ENSIPUP00000027639	RRM_1	PF00076.22	1.4e-65	2	3
ENSIPUP00000027639	RRM_1	PF00076.22	1.4e-65	3	3
ENSIPUP00000027639	RRM_3	PF08777.11	4.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000028763	-	1859	XM_017451345	ENSIPUP00000027639	533 (aa)	XP_017306834	-

Gene Model

Click here to download ENSIPUG00000018724's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018724's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000018724	-	68	55.882	ENSIPUG00000016620	pabpc4	83	55.882
ENSIPUG00000018724	-	84	61.194	ENSIPUG00000008848	pabpc1a	82	61.194
ENSIPUG00000018724	-	96	60.294	ENSIPUG00000021244	-	82	60.294
ENSIPUG00000018724	-	56	46.183	ENSIPUG00000024284	-	75	46.183
ENSIPUG00000018724	-	71	58.209	ENSIPUG00000010791	-	73	58.209
ENSIPUG00000018724	-	56	65.909	ENSIPUG00000006780	-	85	65.909
ENSIPUG00000018724	-	89	57.353	ENSIPUG00000012602	pabpc1l	89	57.353

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018724	-	79	56.716	ENSAPOG00000015105	pabpc1a	76	56.716	Acanthochromis_polyacanthus
ENSIPUG00000018724	-	76	55.224	ENSAPOG00000017776	pabpc1b	74	55.224	Acanthochromis_polyacanthus
ENSIPUG00000018724	-	79	58.209	ENSACIG00000004685	pabpc1a	78	58.209	Amphilophus_citrinellus
ENSIPUG00000018724	-	68	55.224	ENSACIG00000018366	pabpc1b	63	55.224	Amphilophus_citrinellus
ENSIPUG00000018724	-	79	56.716	ENSAOCG00000011656	pabpc1a	81	56.716	Amphiprion_ocellaris
ENSIPUG00000018724	-	76	53.731	ENSAOCG00000019839	pabpc1b	74	53.731	Amphiprion_ocellaris
ENSIPUG00000018724	-	76	53.731	ENSAPEG00000010435	pabpc1b	74	53.731	Amphiprion_percula
ENSIPUG00000018724	-	79	56.716	ENSAPEG00000006963	pabpc1a	81	56.716	Amphiprion_percula
ENSIPUG00000018724	-	76	55.224	ENSATEG00000012917	pabpc1b	73	55.224	Anabas_testudineus
ENSIPUG00000018724	-	79	56.716	ENSATEG00000024852	pabpc1a	81	56.716	Anabas_testudineus
ENSIPUG00000018724	-	76	58.209	ENSACLG00000009399	pabpc1a	78	58.209	Astatotilapia_calliptera
ENSIPUG00000018724	-	78	55.224	ENSACLG00000014335	pabpc1b	75	55.224	Astatotilapia_calliptera
ENSIPUG00000018724	-	76	58.209	ENSAMXG00000008599	pabpc1b	83	58.209	Astyanax_mexicanus
ENSIPUG00000018724	-	87	56.716	ENSCSEG00000015241	-	81	56.716	Cynoglossus_semilaevis
ENSIPUG00000018724	-	79	56.716	ENSCSEG00000013324	pabpc1a	81	56.716	Cynoglossus_semilaevis
ENSIPUG00000018724	-	75	58.209	ENSCVAG00000021872	pabpc1a	74	58.209	Cyprinodon_variegatus
ENSIPUG00000018724	-	76	53.731	ENSCVAG00000005489	pabpc1b	74	53.731	Cyprinodon_variegatus
ENSIPUG00000018724	-	76	58.209	ENSDARG00000017219	pabpc1a	83	58.209	Danio_rerio
ENSIPUG00000018724	-	78	59.701	ENSDARG00000021140	pabpc1b	93	58.333	Danio_rerio
ENSIPUG00000018724	-	79	52.857	ENSELUG00000003614	pabpc1a	76	52.857	Esox_lucius
ENSIPUG00000018724	-	76	54.412	ENSELUG00000015062	-	74	54.412	Esox_lucius
ENSIPUG00000018724	-	52	43.111	ENSELUG00000005389	-	94	43.111	Esox_lucius
ENSIPUG00000018724	-	76	58.209	ENSFHEG00000018979	pabpc1a	81	58.209	Fundulus_heteroclitus
ENSIPUG00000018724	-	76	55.224	ENSFHEG00000008186	pabpc1b	74	55.224	Fundulus_heteroclitus
ENSIPUG00000018724	-	68	52.239	ENSGMOG00000002448	-	61	52.239	Gadus_morhua
ENSIPUG00000018724	-	79	53.731	ENSGMOG00000013448	pabpc1a	81	53.731	Gadus_morhua
ENSIPUG00000018724	-	86	58.209	ENSGAFG00000019750	pabpc1a	88	58.209	Gambusia_affinis
ENSIPUG00000018724	-	76	55.224	ENSGAFG00000010193	pabpc1b	77	55.224	Gambusia_affinis
ENSIPUG00000018724	-	84	55.224	ENSGACG00000003572	pabpc1a	78	55.224	Gasterosteus_aculeatus
ENSIPUG00000018724	-	86	56.716	ENSGACG00000003771	pabpc1b	91	56.716	Gasterosteus_aculeatus
ENSIPUG00000018724	-	76	58.209	ENSHBUG00000020487	pabpc1a	78	58.209	Haplochromis_burtoni
ENSIPUG00000018724	-	78	55.224	ENSHBUG00000002075	pabpc1b	75	55.224	Haplochromis_burtoni
ENSIPUG00000018724	-	66	49.097	ENSHCOG00000003175	pabpc1b	74	48.772	Hippocampus_comes
ENSIPUG00000018724	-	79	56.716	ENSHCOG00000013502	pabpc1a	78	56.716	Hippocampus_comes
ENSIPUG00000018724	-	76	55.224	ENSKMAG00000008049	pabpc1b	75	55.224	Kryptolebias_marmoratus
ENSIPUG00000018724	-	78	56.716	ENSKMAG00000000605	pabpc1a	76	56.716	Kryptolebias_marmoratus
ENSIPUG00000018724	-	78	55.224	ENSLBEG00000026845	pabpc1b	75	55.224	Labrus_bergylta
ENSIPUG00000018724	-	79	55.224	ENSLBEG00000024002	-	76	55.224	Labrus_bergylta
ENSIPUG00000018724	-	76	56.716	ENSMAMG00000004502	-	78	56.716	Mastacembelus_armatus
ENSIPUG00000018724	-	76	56.716	ENSMAMG00000014610	pabpc1b	79	56.716	Mastacembelus_armatus
ENSIPUG00000018724	-	76	58.209	ENSMZEG00005025416	pabpc1a	78	58.209	Maylandia_zebra
ENSIPUG00000018724	-	78	55.224	ENSMZEG00005026745	pabpc1b	75	55.224	Maylandia_zebra
ENSIPUG00000018724	-	75	56.716	ENSMMOG00000018044	pabpc1a	73	56.716	Mola_mola
ENSIPUG00000018724	-	68	54.412	ENSMMOG00000018009	pabpc1b	76	54.412	Mola_mola
ENSIPUG00000018724	-	79	50.746	ENSMODG00000015024	-	76	50.746	Monodelphis_domestica
ENSIPUG00000018724	-	66	53.333	ENSMODG00000013156	-	58	53.333	Monodelphis_domestica
ENSIPUG00000018724	-	86	55.224	ENSMALG00000006066	pabpc1b	88	55.224	Monopterus_albus
ENSIPUG00000018724	-	79	56.716	ENSMALG00000013020	-	81	56.716	Monopterus_albus
ENSIPUG00000018724	-	76	58.209	ENSNBRG00000003068	-	80	58.209	Neolamprologus_brichardi
ENSIPUG00000018724	-	78	55.224	ENSNBRG00000013737	pabpc1b	88	55.882	Neolamprologus_brichardi
ENSIPUG00000018724	-	78	55.224	ENSONIG00000002717	pabpc1b	75	55.224	Oreochromis_niloticus
ENSIPUG00000018724	-	78	58.209	ENSONIG00000006871	-	78	58.209	Oreochromis_niloticus
ENSIPUG00000018724	-	76	59.701	ENSORLG00000003008	-	74	59.701	Oryzias_latipes
ENSIPUG00000018724	-	85	55.224	ENSORLG00000002691	pabpc1a	81	55.224	Oryzias_latipes
ENSIPUG00000018724	-	76	59.701	ENSORLG00020022259	-	74	59.701	Oryzias_latipes_hni
ENSIPUG00000018724	-	85	55.224	ENSORLG00020022398	pabpc1a	81	55.224	Oryzias_latipes_hni
ENSIPUG00000018724	-	85	55.224	ENSORLG00015013633	pabpc1	81	55.224	Oryzias_latipes_hsok
ENSIPUG00000018724	-	76	59.701	ENSORLG00015010932	-	74	59.701	Oryzias_latipes_hsok
ENSIPUG00000018724	-	85	56.716	ENSOMEG00000020219	pabpc1a	81	56.716	Oryzias_melastigma
ENSIPUG00000018724	-	71	56.716	ENSOMEG00000013627	pabpc1b	81	56.716	Oryzias_melastigma
ENSIPUG00000018724	-	76	58.209	ENSPKIG00000005676	pabpc1b	73	58.209	Paramormyrops_kingsleyae
ENSIPUG00000018724	-	67	55.556	ENSPMGG00000023134	-	82	55.556	Periophthalmus_magnuspinnatus
ENSIPUG00000018724	-	68	56.250	ENSPMGG00000022487	pabpc1a	78	56.250	Periophthalmus_magnuspinnatus
ENSIPUG00000018724	-	75	58.209	ENSPFOG00000010815	pabpc1a	72	58.209	Poecilia_formosa
ENSIPUG00000018724	-	76	55.224	ENSPFOG00000005917	pabpc1b	73	55.224	Poecilia_formosa
ENSIPUG00000018724	-	75	58.209	ENSPLAG00000004114	pabpc1a	81	58.209	Poecilia_latipinna
ENSIPUG00000018724	-	76	55.224	ENSPLAG00000001388	pabpc1b	74	55.224	Poecilia_latipinna
ENSIPUG00000018724	-	75	58.209	ENSPMEG00000001334	pabpc1a	81	58.209	Poecilia_mexicana
ENSIPUG00000018724	-	76	53.731	ENSPMEG00000014399	pabpc1b	74	53.731	Poecilia_mexicana
ENSIPUG00000018724	-	68	58.209	ENSPREG00000019595	pabpc1a	96	59.649	Poecilia_reticulata
ENSIPUG00000018724	-	86	55.224	ENSPREG00000010911	pabpc1b	88	55.224	Poecilia_reticulata
ENSIPUG00000018724	-	78	55.224	ENSPNYG00000012578	pabpc1b	75	55.224	Pundamilia_nyererei
ENSIPUG00000018724	-	76	58.209	ENSPNYG00000005192	pabpc1a	78	58.209	Pundamilia_nyererei
ENSIPUG00000018724	-	87	59.701	ENSPNAG00000028408	pabpc1a	81	59.701	Pygocentrus_nattereri
ENSIPUG00000018724	-	76	58.209	ENSPNAG00000024626	pabpc1b	83	58.209	Pygocentrus_nattereri
ENSIPUG00000018724	-	76	50.746	ENSRBIG00000028738	-	90	50.746	Rhinopithecus_bieti
ENSIPUG00000018724	-	68	47.761	ENSSHAG00000000511	-	63	47.761	Sarcophilus_harrisii
ENSIPUG00000018724	-	50	55.932	ENSSFOG00015019668	-	68	55.932	Scleropages_formosus
ENSIPUG00000018724	-	78	58.209	ENSSFOG00015002752	-	81	58.209	Scleropages_formosus
ENSIPUG00000018724	-	78	59.701	ENSSFOG00015006662	pabpc1a	75	59.701	Scleropages_formosus
ENSIPUG00000018724	-	76	53.731	ENSSMAG00000006869	pabpc1b	74	53.731	Scophthalmus_maximus
ENSIPUG00000018724	-	76	55.224	ENSSMAG00000010803	pabpc1a	74	55.224	Scophthalmus_maximus
ENSIPUG00000018724	-	76	56.716	ENSSDUG00000011965	pabpc1b	73	56.716	Seriola_dumerili
ENSIPUG00000018724	-	79	56.716	ENSSDUG00000006675	pabpc1a	76	56.716	Seriola_dumerili
ENSIPUG00000018724	-	79	56.716	ENSSLDG00000011661	pabpc1a	76	56.716	Seriola_lalandi_dorsalis
ENSIPUG00000018724	-	76	56.061	ENSSLDG00000014156	pabpc1b	74	56.061	Seriola_lalandi_dorsalis
ENSIPUG00000018724	-	79	56.716	ENSSPAG00000014453	-	81	56.716	Stegastes_partitus
ENSIPUG00000018724	-	86	56.716	ENSSPAG00000019265	pabpc1b	88	56.716	Stegastes_partitus
ENSIPUG00000018724	-	78	55.224	ENSTRUG00000003767	-	77	55.224	Takifugu_rubripes
ENSIPUG00000018724	-	76	58.209	ENSTRUG00000011577	-	74	58.209	Takifugu_rubripes
ENSIPUG00000018724	-	81	55.224	ENSTNIG00000009153	pabpc1b	77	55.224	Tetraodon_nigroviridis
ENSIPUG00000018724	-	79	58.209	ENSTNIG00000013307	pabpc1a	76	58.209	Tetraodon_nigroviridis
ENSIPUG00000018724	-	64	50.182	ENSUMAG00000023926	-	87	49.818	Ursus_maritimus
ENSIPUG00000018724	-	68	58.209	ENSXCOG00000017066	pabpc1a	63	58.209	Xiphophorus_couchianus
ENSIPUG00000018724	-	76	55.224	ENSXCOG00000019901	pabpc1b	77	55.224	Xiphophorus_couchianus
ENSIPUG00000018724	-	76	58.209	ENSXMAG00000002555	pabpc1a	81	58.209	Xiphophorus_maculatus
ENSIPUG00000018724	-	76	55.224	ENSXMAG00000003753	pabpc1b	94	55.224	Xiphophorus_maculatus