EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000018977 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 4712 bases
Position: chr19:17724533-17729244
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000028054	DEAD	PF00270.29	2.6e-45	1	1
ENSIPUP00000028058	DEAD	PF00270.29	3.4e-45	1	1
ENSIPUP00000028047	DEAD	PF00270.29	3.8e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000029196	-	1185	-	ENSIPUP00000028054	394 (aa)	-	-
ENSIPUT00000029199	-	1296	-	ENSIPUP00000028058	431 (aa)	-	-
ENSIPUT00000029188	-	1365	-	ENSIPUP00000028047	454 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000018977's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018977's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000018977	-	88	32.039	ENSIPUG00000008623	ddx52	66	32.039
ENSIPUG00000018977	-	81	32.791	ENSIPUG00000023788	ddx47	77	32.791
ENSIPUG00000018977	-	80	31.680	ENSIPUG00000021785	eif4a3	87	31.680
ENSIPUG00000018977	-	74	30.312	ENSIPUG00000014551	ddx55	58	30.312
ENSIPUG00000018977	-	89	39.945	ENSIPUG00000023423	ddx43	60	39.713
ENSIPUG00000018977	-	84	38.000	ENSIPUG00000023024	ddx3xa	59	36.603
ENSIPUG00000018977	-	78	30.423	ENSIPUG00000012038	eif4a2	86	30.423
ENSIPUG00000018977	-	92	39.678	ENSIPUG00000007815	ddx5	65	40.534
ENSIPUG00000018977	-	94	38.947	ENSIPUG00000014448	ddx5	83	38.947
ENSIPUG00000018977	-	84	37.322	ENSIPUG00000009936	ddx3xb	60	37.313
ENSIPUG00000018977	-	84	36.578	ENSIPUG00000001845	ddx4	61	38.338
ENSIPUG00000018977	-	77	30.986	ENSIPUG00000012876	ddx18	60	30.682
ENSIPUG00000018977	-	93	38.727	ENSIPUG00000015768	si:dkey-156n14.5	93	38.727
ENSIPUG00000018977	-	76	32.378	ENSIPUG00000005386	ddx49	72	32.378
ENSIPUG00000018977	-	78	30.749	ENSIPUG00000017350	Ddx28	66	30.749
ENSIPUG00000018977	-	97	33.258	ENSIPUG00000008100	Ddx59	68	35.616
ENSIPUG00000018977	-	78	30.423	ENSIPUG00000009463	EIF4A2	84	30.423
ENSIPUG00000018977	-	84	39.467	ENSIPUG00000005247	DDX23	51	39.467
ENSIPUG00000018977	-	85	37.270	ENSIPUG00000016171	ddx41	60	38.933

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000018977	-	92	84.892	ENSAMEG00000017873	DDX46	56	85.323	Ailuropoda_melanoleuca
ENSIPUG00000018977	-	92	72.422	ENSCING00000006813	-	56	72.422	Ciona_intestinalis
ENSIPUG00000018977	-	92	72.182	ENSCSAVG00000002353	-	79	71.293	Ciona_savignyi
ENSIPUG00000018977	-	94	66.307	ENSPCOG00000018969	DDX46	53	73.373	Propithecus_coquereli