EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000018994 (Gene tree)
Gene ID
100528977
Gene Symbol
snrpf
Alias
ruxf
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
4237 bases
Position
chr7:12474543-12478779
Accession
100528977
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000028090LSMPF01423.228e-2111
ENSIPUP00000028083LSMPF01423.228.3e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000029232-258-ENSIPUP0000002809085 (aa)--
ENSIPUT00000029224-526-ENSIPUP0000002808386 (aa)-E3TFD6
Gene Model
Click here to download ENSIPUG00000018994's gene model file
Pathways
Pathway IDPathway NameSource
ipu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000018994's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000018994snrpf7850.000ENSIPUG00000004508lsm68350.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000018994snrpf10097.674ENSG00000139343SNRPF10097.674Homo_sapiens
ENSIPUG00000018994snrpf99100.000ENSAPOG00000003377snrpf66100.000Acanthochromis_polyacanthus
ENSIPUG00000018994snrpf8884.211ENSAMEG00000018718-8785.333Ailuropoda_melanoleuca
ENSIPUG00000018994snrpf9997.647ENSAMEG00000002166-10097.647Ailuropoda_melanoleuca
ENSIPUG00000018994snrpf100100.000ENSACIG00000013216snrpf100100.000Amphilophus_citrinellus
ENSIPUG00000018994snrpf100100.000ENSAOCG00000015108snrpf100100.000Amphiprion_ocellaris
ENSIPUG00000018994snrpf100100.000ENSAPEG00000022022snrpf100100.000Amphiprion_percula
ENSIPUG00000018994snrpf99100.000ENSATEG00000022625snrpf90100.000Anabas_testudineus
ENSIPUG00000018994snrpf9996.471ENSACAG00000014073SNRPF9896.471Anolis_carolinensis
ENSIPUG00000018994snrpf10097.674ENSANAG00000032845SNRPF10097.674Aotus_nancymaae
ENSIPUG00000018994snrpf8768.000ENSANAG00000025860-8568.000Aotus_nancymaae
ENSIPUG00000018994snrpf8488.732ENSANAG00000020297-6588.732Aotus_nancymaae
ENSIPUG00000018994snrpf100100.000ENSACLG00000016066snrpf100100.000Astatotilapia_calliptera
ENSIPUG00000018994snrpf8797.333ENSAMXG00000007421snrpf8797.333Astyanax_mexicanus
ENSIPUG00000018994snrpf10097.674ENSBTAG00000016271SNRPF10097.674Bos_taurus
ENSIPUG00000018994snrpf9191.026ENSBTAG00000050012-9390.667Bos_taurus
ENSIPUG00000018994snrpf9369.620WBGene00004918snr-58771.622Caenorhabditis_elegans
ENSIPUG00000018994snrpf10097.674ENSCJAG00000002705-10097.674Callithrix_jacchus
ENSIPUG00000018994snrpf8590.278ENSCAFG00000031151-8591.781Canis_familiaris
ENSIPUG00000018994snrpf10097.674ENSCAFG00000006395-7797.674Canis_familiaris
ENSIPUG00000018994snrpf9285.897ENSCAFG00020013161-7494.286Canis_lupus_dingo
ENSIPUG00000018994snrpf8590.278ENSCAFG00020010823-8591.781Canis_lupus_dingo
ENSIPUG00000018994snrpf9690.244ENSTSYG00000031636-6193.151Carlito_syrichta
ENSIPUG00000018994snrpf8792.105ENSTSYG00000036502-8792.105Carlito_syrichta
ENSIPUG00000018994snrpf8784.000ENSTSYG00000030635-8784.000Carlito_syrichta
ENSIPUG00000018994snrpf9997.647ENSCAPG00000007242SNRPF10097.647Cavia_aperea
ENSIPUG00000018994snrpf10097.674ENSCPOG00000013898SNRPF10097.674Cavia_porcellus
ENSIPUG00000018994snrpf10097.674ENSCCAG00000037378-10097.674Cebus_capucinus
ENSIPUG00000018994snrpf10096.512ENSCCAG00000017356-10096.512Cebus_capucinus
ENSIPUG00000018994snrpf9988.095ENSCCAG00000033627-5789.041Cebus_capucinus
ENSIPUG00000018994snrpf10097.674ENSCLAG00000007200SNRPF10097.674Chinchilla_lanigera
ENSIPUG00000018994snrpf10097.674ENSCSAG00000003602-7097.674Chlorocebus_sabaeus
ENSIPUG00000018994snrpf7496.875ENSCHOG00000009392SNRPF10096.875Choloepus_hoffmanni
ENSIPUG00000018994snrpf8789.333ENSCPBG00000006227-8789.333Chrysemys_picta_bellii
ENSIPUG00000018994snrpf9991.765ENSCPBG00000024287-6093.243Chrysemys_picta_bellii
ENSIPUG00000018994snrpf10087.209ENSCPBG00000026463-8788.000Chrysemys_picta_bellii
ENSIPUG00000018994snrpf10086.047ENSCPBG00000001985-8988.000Chrysemys_picta_bellii
ENSIPUG00000018994snrpf9988.095ENSCSAVG00000007498-8390.411Ciona_savignyi
ENSIPUG00000018994snrpf10097.674ENSCGRG00001017100-10097.674Cricetulus_griseus_chok1gshd
ENSIPUG00000018994snrpf8790.541ENSCGRG00001008965-5790.541Cricetulus_griseus_chok1gshd
ENSIPUG00000018994snrpf10097.674ENSCGRG00000000336-10097.674Cricetulus_griseus_crigri
ENSIPUG00000018994snrpf9391.139ENSCGRG00000018878-9489.333Cricetulus_griseus_crigri
ENSIPUG00000018994snrpf10098.837ENSCSEG00000004748snrpf10098.837Cynoglossus_semilaevis
ENSIPUG00000018994snrpf99100.000ENSCVAG00000000397snrpf67100.000Cyprinodon_variegatus
ENSIPUG00000018994snrpf10097.727ENSDARG00000105037snrpf10097.727Danio_rerio
ENSIPUG00000018994snrpf10096.512ENSDNOG00000048989-7796.512Dasypus_novemcinctus
ENSIPUG00000018994snrpf8781.333ENSDNOG00000049373-6581.333Dasypus_novemcinctus
ENSIPUG00000018994snrpf10097.674ENSDNOG00000043775-5597.674Dasypus_novemcinctus
ENSIPUG00000018994snrpf6994.915ENSDORG00000029740-7294.915Dipodomys_ordii
ENSIPUG00000018994snrpf8487.500ENSDORG00000025351-10087.500Dipodomys_ordii
ENSIPUG00000018994snrpf9977.381FBgn0000426SmF8380.822Drosophila_melanogaster
ENSIPUG00000018994snrpf10097.674ENSETEG00000001558-10097.674Echinops_telfairi
ENSIPUG00000018994snrpf9675.610ENSEBUG00000001793-7286.567Eptatretus_burgeri
ENSIPUG00000018994snrpf10097.674ENSECAG00000019817SNRPF7097.674Equus_caballus
ENSIPUG00000018994snrpf9997.647ENSEEUG00000013509SNRPF10097.647Erinaceus_europaeus
ENSIPUG00000018994snrpf10094.186ENSELUG00000007737RUXF8696.000Esox_lucius
ENSIPUG00000018994snrpf10097.674ENSELUG00000003121RUXF10097.674Esox_lucius
ENSIPUG00000018994snrpf10097.674ENSFCAG00000029966-10097.674Felis_catus
ENSIPUG00000018994snrpf8773.333ENSFCAG00000021942-8773.333Felis_catus
ENSIPUG00000018994snrpf9876.190ENSFCAG00000031148-7274.359Felis_catus
ENSIPUG00000018994snrpf9997.647ENSFALG00000010799SNRPF9997.647Ficedula_albicollis
ENSIPUG00000018994snrpf10097.674ENSFDAG00000002831-10097.674Fukomys_damarensis
ENSIPUG00000018994snrpf99100.000ENSFHEG00000003240snrpf75100.000Fundulus_heteroclitus
ENSIPUG00000018994snrpf99100.000ENSGMOG00000007741snrpf100100.000Gadus_morhua
ENSIPUG00000018994snrpf10097.674ENSGALG00000011409SNRPF10097.674Gallus_gallus
ENSIPUG00000018994snrpf10098.824ENSGAFG00000016187snrpf97100.000Gambusia_affinis
ENSIPUG00000018994snrpf9998.824ENSGACG00000020055snrpf10098.824Gasterosteus_aculeatus
ENSIPUG00000018994snrpf7188.333ENSGAGG00000011163-8691.837Gopherus_agassizii
ENSIPUG00000018994snrpf9388.608ENSGAGG00000022991-8091.176Gopherus_agassizii
ENSIPUG00000018994snrpf8790.541ENSGAGG00000012945-6992.000Gopherus_agassizii
ENSIPUG00000018994snrpf8084.058ENSGAGG00000014132-8384.058Gopherus_agassizii
ENSIPUG00000018994snrpf7293.548ENSGAGG00000020974-5490.625Gopherus_agassizii
ENSIPUG00000018994snrpf9878.571ENSGGOG00000039936-8376.000Gorilla_gorilla
ENSIPUG00000018994snrpf10097.674ENSGGOG00000001127-10097.674Gorilla_gorilla
ENSIPUG00000018994snrpf9274.684ENSGGOG00000039564-9073.333Gorilla_gorilla
ENSIPUG00000018994snrpf10097.674ENSHGLG00000009108SNRPF10097.674Heterocephalus_glaber_female
ENSIPUG00000018994snrpf10096.512ENSHGLG00000021172-10096.512Heterocephalus_glaber_female
ENSIPUG00000018994snrpf10096.512ENSHGLG00100019596-10096.512Heterocephalus_glaber_male
ENSIPUG00000018994snrpf9997.647ENSHGLG00100008103-10097.647Heterocephalus_glaber_male
ENSIPUG00000018994snrpf7587.324ENSHCOG00000018663snrpf5588.571Hippocampus_comes
ENSIPUG00000018994snrpf10097.674ENSSTOG00000010434-10097.674Ictidomys_tridecemlineatus
ENSIPUG00000018994snrpf10097.674ENSJJAG00000011272-10097.674Jaculus_jaculus
ENSIPUG00000018994snrpf10082.558ENSJJAG00000010502-8984.000Jaculus_jaculus
ENSIPUG00000018994snrpf10079.070ENSJJAG00000004558-8980.000Jaculus_jaculus
ENSIPUG00000018994snrpf7991.045ENSJJAG00000004828-8692.857Jaculus_jaculus
ENSIPUG00000018994snrpf100100.000ENSKMAG00000013566snrpf99100.000Kryptolebias_marmoratus
ENSIPUG00000018994snrpf10098.837ENSLBEG00000008800snrpf10098.837Labrus_bergylta
ENSIPUG00000018994snrpf9997.619ENSLACG00000002456-7496.512Latimeria_chalumnae
ENSIPUG00000018994snrpf10097.674ENSLOCG00000015744snrpf10097.674Lepisosteus_oculatus
ENSIPUG00000018994snrpf9997.647ENSLAFG00000017426SNRPF9997.647Loxodonta_africana
ENSIPUG00000018994snrpf10098.824ENSMAMG00000016593snrpf10098.824Mastacembelus_armatus
ENSIPUG00000018994snrpf100100.000ENSMZEG00005014701snrpf100100.000Maylandia_zebra
ENSIPUG00000018994snrpf9997.619ENSMGAG00000011453-7697.619Meleagris_gallopavo
ENSIPUG00000018994snrpf8797.297ENSMAUG00000016909-10097.297Mesocricetus_auratus
ENSIPUG00000018994snrpf8797.297ENSMAUG00000019737-10097.297Mesocricetus_auratus
ENSIPUG00000018994snrpf8793.333ENSMAUG00000008799-8793.333Mesocricetus_auratus
ENSIPUG00000018994snrpf9772.289ENSMAUG00000010289-6694.000Mesocricetus_auratus
ENSIPUG00000018994snrpf10097.674ENSMICG00000012153-10097.674Microcebus_murinus
ENSIPUG00000018994snrpf8790.667ENSMICG00000030494-6090.667Microcebus_murinus
ENSIPUG00000018994snrpf8080.882ENSMOCG00000020220-8780.882Microtus_ochrogaster
ENSIPUG00000018994snrpf8784.000ENSMOCG00000022166-8284.000Microtus_ochrogaster
ENSIPUG00000018994snrpf10097.674ENSMOCG00000020437Snrpf10097.674Microtus_ochrogaster
ENSIPUG00000018994snrpf9998.824ENSMMOG00000007127snrpf10098.824Mola_mola
ENSIPUG00000018994snrpf10097.674ENSMODG00000008091SNRPF7597.674Monodelphis_domestica
ENSIPUG00000018994snrpf100100.000ENSMALG00000012328snrpf100100.000Monopterus_albus
ENSIPUG00000018994snrpf10097.674MGP_CAROLIEiJ_G0015735-10097.674Mus_caroli
ENSIPUG00000018994snrpf10097.674ENSMUSG00000020018Snrpf10097.674Mus_musculus
ENSIPUG00000018994snrpf10097.674MGP_PahariEiJ_G0031350Snrpf10097.674Mus_pahari
ENSIPUG00000018994snrpf10097.674MGP_SPRETEiJ_G0016553Snrpf10097.674Mus_spretus
ENSIPUG00000018994snrpf10097.674ENSMPUG00000007176-7797.674Mustela_putorius_furo
ENSIPUG00000018994snrpf10097.674ENSMLUG00000026149-8197.674Myotis_lucifugus
ENSIPUG00000018994snrpf10077.907ENSMLUG00000026269-7176.000Myotis_lucifugus
ENSIPUG00000018994snrpf10097.674ENSMLUG00000027932-8197.674Myotis_lucifugus
ENSIPUG00000018994snrpf10097.674ENSMLUG00000029201-8197.674Myotis_lucifugus
ENSIPUG00000018994snrpf9997.647ENSMLUG00000013577-10097.647Myotis_lucifugus
ENSIPUG00000018994snrpf10097.674ENSNGAG00000024292-10097.674Nannospalax_galili
ENSIPUG00000018994snrpf7490.476ENSNGAG00000005851-7190.000Nannospalax_galili
ENSIPUG00000018994snrpf99100.000ENSNBRG00000011682snrpf87100.000Neolamprologus_brichardi
ENSIPUG00000018994snrpf8670.270ENSMEUG00000000671SNRPF8770.270Notamacropus_eugenii
ENSIPUG00000018994snrpf10097.674ENSODEG00000010328-10097.674Octodon_degus
ENSIPUG00000018994snrpf9997.619ENSOCUG00000010925SNRPF7696.512Oryctolagus_cuniculus
ENSIPUG00000018994snrpf8697.297ENSORLG00020008216snrpf8797.297Oryzias_latipes_hni
ENSIPUG00000018994snrpf8697.297ENSORLG00015007418snrpf8797.297Oryzias_latipes_hsok
ENSIPUG00000018994snrpf10098.824ENSOMEG00000003018snrpf10098.824Oryzias_melastigma
ENSIPUG00000018994snrpf8796.000ENSOGAG00000030323-8796.000Otolemur_garnettii
ENSIPUG00000018994snrpf10097.674ENSOARG00000011853-7597.674Ovis_aries
ENSIPUG00000018994snrpf9878.571ENSPPAG00000037544-8376.000Pan_paniscus
ENSIPUG00000018994snrpf9274.684ENSPPAG00000037479-9173.333Pan_paniscus
ENSIPUG00000018994snrpf9875.000ENSPPRG00000007449-7774.667Panthera_pardus
ENSIPUG00000018994snrpf10097.674ENSPPRG00000005875-10097.674Panthera_pardus
ENSIPUG00000018994snrpf9877.381ENSPTIG00000005117-8974.667Panthera_tigris_altaica
ENSIPUG00000018994snrpf10097.674ENSPTIG00000007520SNRPF10097.674Panthera_tigris_altaica
ENSIPUG00000018994snrpf9878.571ENSPTRG00000043814-8376.000Pan_troglodytes
ENSIPUG00000018994snrpf9274.684ENSPTRG00000047717-9173.333Pan_troglodytes
ENSIPUG00000018994snrpf99100.000ENSPKIG00000014784snrpf93100.000Paramormyrops_kingsleyae
ENSIPUG00000018994snrpf9997.647ENSPSIG00000016462SNRPF9997.647Pelodiscus_sinensis
ENSIPUG00000018994snrpf9998.824ENSPMGG00000023548snrpf10098.824Periophthalmus_magnuspinnatus
ENSIPUG00000018994snrpf10097.674ENSPEMG00000023326Snrpf10097.674Peromyscus_maniculatus_bairdii
ENSIPUG00000018994snrpf100100.000ENSPLAG00000023932snrpf100100.000Poecilia_latipinna
ENSIPUG00000018994snrpf100100.000ENSPMEG00000003377snrpf100100.000Poecilia_mexicana
ENSIPUG00000018994snrpf10098.824ENSPREG00000022635snrpf97100.000Poecilia_reticulata
ENSIPUG00000018994snrpf10097.674ENSPPYG00000004847-10097.674Pongo_abelii
ENSIPUG00000018994snrpf10097.674ENSPCOG00000023833-10097.674Propithecus_coquereli
ENSIPUG00000018994snrpf10097.674ENSPVAG00000009036SNRPF10097.674Pteropus_vampyrus
ENSIPUG00000018994snrpf100100.000ENSPNYG00000021712snrpf100100.000Pundamilia_nyererei
ENSIPUG00000018994snrpf10098.824ENSPNAG00000019117snrpf10098.824Pygocentrus_nattereri
ENSIPUG00000018994snrpf10097.674ENSRNOG00000005556Snrpf10097.674Rattus_norvegicus
ENSIPUG00000018994snrpf8794.667ENSRBIG00000030414-8794.667Rhinopithecus_bieti
ENSIPUG00000018994snrpf8794.667ENSRROG00000021975-8794.667Rhinopithecus_roxellana
ENSIPUG00000018994snrpf8260.563YPR182WSMX38360.563Saccharomyces_cerevisiae
ENSIPUG00000018994snrpf10097.674ENSSBOG00000036179-10097.674Saimiri_boliviensis_boliviensis
ENSIPUG00000018994snrpf10096.512ENSSBOG00000012868-10096.512Saimiri_boliviensis_boliviensis
ENSIPUG00000018994snrpf8782.667ENSSBOG00000032297-8682.667Saimiri_boliviensis_boliviensis
ENSIPUG00000018994snrpf9177.778ENSSBOG00000027638-9177.778Saimiri_boliviensis_boliviensis
ENSIPUG00000018994snrpf9997.647ENSSHAG00000012294SNRPF7797.647Sarcophilus_harrisii
ENSIPUG00000018994snrpf74100.000ENSSFOG00015021523snrpf96100.000Scleropages_formosus
ENSIPUG00000018994snrpf9998.810ENSSMAG00000005533snrpf9997.674Scophthalmus_maximus
ENSIPUG00000018994snrpf76100.000ENSSDUG00000016283snrpf77100.000Seriola_dumerili
ENSIPUG00000018994snrpf99100.000ENSSLDG00000005119snrpf10098.837Seriola_lalandi_dorsalis
ENSIPUG00000018994snrpf9372.152ENSSLDG00000003885-8975.342Seriola_lalandi_dorsalis
ENSIPUG00000018994snrpf10097.647ENSSPUG00000014590-10097.647Sphenodon_punctatus
ENSIPUG00000018994snrpf99100.000ENSSPAG00000003283snrpf97100.000Stegastes_partitus
ENSIPUG00000018994snrpf10097.674ENSSSCG00000000895SNRPF10097.674Sus_scrofa
ENSIPUG00000018994snrpf8198.551ENSTRUG00000014956snrpf10098.551Takifugu_rubripes
ENSIPUG00000018994snrpf10098.837ENSTNIG00000012672snrpf10098.837Tetraodon_nigroviridis
ENSIPUG00000018994snrpf8770.667ENSTTRG00000006070SNRPF8770.667Tursiops_truncatus
ENSIPUG00000018994snrpf10097.674ENSUAMG00000008176-10097.674Ursus_americanus
ENSIPUG00000018994snrpf10084.884ENSUAMG00000001101-8886.667Ursus_americanus
ENSIPUG00000018994snrpf10097.674ENSUMAG00000003528-10097.674Ursus_maritimus
ENSIPUG00000018994snrpf8786.667ENSUMAG00000006177-8886.667Ursus_maritimus
ENSIPUG00000018994snrpf10097.674ENSVPAG00000008712-10097.674Vicugna_pacos
ENSIPUG00000018994snrpf9189.744ENSVVUG00000023821-9689.333Vulpes_vulpes
ENSIPUG00000018994snrpf8675.000ENSXETG00000021630snrpf8775.000Xenopus_tropicalis
ENSIPUG00000018994snrpf10098.824ENSXCOG00000013860snrpf97100.000Xiphophorus_couchianus
ENSIPUG00000018994snrpf100100.000ENSXMAG00000015448snrpf100100.000Xiphophorus_maculatus

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