EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000019088 (Gene tree)
Gene ID: 108260117
Gene Symbol: srsf7a
Alias: fb39b02|wu:fb39b02|zgc:77155
Full Name: serine/arginine-rich splicing factor 7-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4582 bases
Position: chr28:1397037-1401618
Accession: 108260117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000028182	zf-CCHC	PF00098.23	9.9e-05	1	1
ENSIPUP00000028182	RRM_1	PF00076.22	9.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000029326	-	913	XM_017460118	ENSIPUP00000028182	303 (aa)	XP_017315607	-

Gene Model

Click here to download ENSIPUG00000019088's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000019088's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000019088	srsf7a	57	78.286	ENSIPUG00000007928	-	54	81.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000019088	srsf7a	81	48.400	ENSANAG00000019399	SRSF7	91	72.581	Aotus_nancymaae
ENSIPUG00000019088	srsf7a	59	87.151	ENSAMXG00000001532	srsf7a	50	93.443	Astyanax_mexicanus
ENSIPUG00000019088	srsf7a	79	80.894	ENSDARG00000035325	srsf7a	100	93.151	Danio_rerio
ENSIPUG00000019088	srsf7a	55	60.452	ENSELUG00000018155	srsf7b	83	72.174	Esox_lucius
ENSIPUG00000019088	srsf7a	56	70.053	ENSGMOG00000002004	srsf7a	53	83.200	Gadus_morhua
ENSIPUG00000019088	srsf7a	52	49.057	ENSHCOG00000017795	-	90	46.988	Hippocampus_comes
ENSIPUG00000019088	srsf7a	52	50.625	ENSMAUG00000011430	-	57	58.140	Mesocricetus_auratus
ENSIPUG00000019088	srsf7a	52	44.937	ENSNBRG00000016360	-	84	49.057	Neolamprologus_brichardi
ENSIPUG00000019088	srsf7a	51	58.599	ENSPMAG00000004472	srsf7a	56	72.727	Petromyzon_marinus
ENSIPUG00000019088	srsf7a	54	79.167	ENSPNAG00000000149	-	54	82.308	Pygocentrus_nattereri
ENSIPUG00000019088	srsf7a	53	46.584	ENSSMAG00000020812	-	68	70.930	Scophthalmus_maximus
ENSIPUG00000019088	srsf7a	76	53.913	ENSSLDG00000021463	srsf7b	70	68.548	Seriola_lalandi_dorsalis
ENSIPUG00000019088	srsf7a	51	60.256	ENSVPAG00000003316	SRSF7	50	76.991	Vicugna_pacos